Clone Sequence Records
BS15425.complete Sequence
992 bp assembled on 2010-02-09
GenBank Submission: KX803205
> BS15425.complete
GAAGTTATCAGTCGACATGTCAGATTCGACTATTTTCCGTTTTAACTCAT
CCATTCTTGATCAGTCAGCGGACAGCAACGTATCCAGTTCGAGCTCCAAT
TCCAGTGTATCCGACTCTTCTGTGGACTCCCATTCATCCATAGAATCCAA
TTCGGGACACAATACATCCGTGGAATCTCAGTCATCCGCGGAATCTGATT
CATCCGCTGATTCCCATTCGTCCTTGGAACGCCCATCCCCAGTGGAGCGT
GATTTATCTGTGGAATCAGACTCATCTTCAGCCACCAATACCAGCGAATC
TTCAGTCGGAGAAGCTTCAAACCAACTGCAGTCACCGCAAAGCAATAACC
CCTTAAATATGGCTAACTTGTCTGTCTCGACTGAAGATGCTCATTCGCAG
ATCAGATCACTTACCCAGGATGTGATCCAGATGGAAGCAGAGTTGGATCG
CATGAATCGCTACTGCGAGGAAGTTGTGGCACAGATTGACACCTTCGCCA
CGAGAACCTCAACGCCAACAACTCGTAGAATTCGCCGCAGAACGAGTCCA
GTAGAAGTGATAGATCTGTCCCATTTGGACCGTGCACCACCTGTTCGATC
CGCTCGGAATCGTGATCCCGATGCTTTCATCGATCTATGCACCCCCGAAG
GCCCAAGAAGTCGCACAGTGAATCTTCACTCCAACGACTCCCTCACCATT
CTGCCACGTCGGTCAGCCGAAAATGACCCGGTAGTGGATCTCGACGTTGC
GTCGCCACCAAAACGCGTTAATCGCGACATTGATGAGTCCCAAAAAGAGG
AGTTATACAAGTGCCCCATCTGCATGGACAGTGTATCGAAGCGCGAGCCA
GTGTCAACCAAATGTGGACACGTCTTCTGCCGCGAATGCATCGAAACAGC
CATCAGAGCTACGCACAAGTGCCCAATATGCAACAAGAAGCTGACCGCAC
GTCAATTCTTTCGCATTTACTTGTAAAAGCTTTCTAGACCAT
BS15425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RA | 960 | CG10981-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
dgrn-RB | 939 | CG10981-PB | 28..939 | 65..976 | 4560 | 100 | Plus |
dgrn-RD | 618 | CG10981-PD | 1..618 | 359..976 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RA | 1632 | CG10981-RA | 335..1294 | 17..976 | 4800 | 100 | Plus |
dgrn-RD | 1635 | CG10981-RD | 335..1297 | 17..976 | 4735 | 99.7 | Plus |
dgrn-RB | 1611 | CG10981-RB | 362..1273 | 65..976 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825805..5826238 | 543..976 | 2170 | 100 | Plus |
3R | 32079331 | 3R | 5825036..5825444 | 44..452 | 2045 | 100 | Plus |
3R | 32079331 | 3R | 5825499..5825588 | 453..542 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:28:11 has no hits.
BS15425.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:29 Download gff for
BS15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-RA | 345..1302 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:56 Download gff for
BS15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 345..1302 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:42 Download gff for
BS15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-RA | 345..1302 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:33 Download gff for
BS15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 335..1292 | 17..974 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:33 Download gff for
BS15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5824949..5824975 | 17..43 | 100 | -> | Plus |
3R | 5825036..5825444 | 44..452 | 100 | -> | Plus |
3R | 5825499..5825588 | 453..542 | 100 | -> | Plus |
3R | 5825805..5826236 | 543..974 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:56 Download gff for
BS15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1650671..1650697 | 17..43 | 100 | -> | Plus |
arm_3R | 1650758..1651166 | 44..452 | 100 | -> | Plus |
arm_3R | 1651221..1651310 | 453..542 | 100 | -> | Plus |
arm_3R | 1651527..1651958 | 543..974 | 100 | | Plus |
BS15425.3prime Sequence
758 bp (687 high quality bases) assembled on 2006-12-21
> BS15425.3prime
TCCCATAAGGGGGCGCGCCAAACGAATGGCCTAGAAAGCTTTTACCTTTA
AATGCGAAAGAATTGACGTGCGGTCAGCTTCTTGTTGCATATTGGGCACT
TGTGCGTAGCTCTGATGGCTGTTTCGATGCATTCGCGGCAGAAGACGTGT
CCACATTTGGTTGACACTGGCTCGCGCTTCGATACACTGTCCATGCAGAT
GGGGCACTTGTATAACTCCTCTTTTTGGGACTCATCAATGTCGCGATTAA
CGCGTTTTGGTGGCGACGCAACGTCGAGATCCACTACCGGGTCATTTTCG
GCTGACCGACGTGGCAGAATGGTGAGGGAGTCGTTGGAGTGAAGATTCAC
TGTGCGACTTCTTGGGCCTTCGGGGGTGCATAGATCGATGAAAGCATCGG
GATCACGATTCCGAGCGGATCGAACAGGTGGTGCACGGTCCAAATGGGAC
AGATCTATCACTTCTACTGGACTCGTTCTGCGGCGAATTCTACGAGTTGT
TGGCGTTGAGGTTCTCGTGGCGAAGGTGTCAATCTGTGCCACAACTTCCT
CGCAGTAGCGATTCATGCGATCCAACTCTGCTTCCATCTGGATCACATCC
TGGGTAAGTGATCTGATCTGCGAATGAGCATCTTCAGTCGAGACAGACAA
GTTAGCCATATTTAAGGGGTTATTGCTTTGCGGTGACTGCAGTTGGTTTG
AAGCTTCTCCGACTGAAGATTCCCTGGTATTGGTGGCTGAAGATGATTCT
GATTCCAC
BS15425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10981-PA | 960 | CG10981-RA | 244..953 | 758..49 | 3500 | 99.7 | Minus |
CG10981-PB | 939 | CG10981-RB | 223..932 | 758..49 | 3500 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RB | 1611 | CG10981-RB | 557..1266 | 758..49 | 3520 | 99.7 | Minus |
dgrn-RA | 1632 | CG10981-RA | 578..1287 | 758..49 | 3520 | 99.7 | Minus |
dgrn-RD | 1635 | CG10981-RD | 581..1290 | 758..49 | 3520 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825805..5826231 | 475..49 | 2135 | 100 | Minus |
3R | 32079331 | 3R | 5825252..5825444 | 758..566 | 935 | 99 | Minus |
3R | 32079331 | 3R | 5825499..5825588 | 565..476 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:25:09 has no hits.
BS15425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:31 Download gff for
BS15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-PB | 223..939 | 42..758 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:10 Download gff for
BS15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-PB | 223..939 | 42..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:50 Download gff for
BS15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 588..1304 | 42..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:06 Download gff for
BS15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RD | 581..1297 | 42..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:06 Download gff for
BS15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5825252..5825444 | 566..758 | 98 | -> | Minus |
3R | 5825499..5825588 | 476..565 | 100 | -> | Minus |
3R | 5825805..5826238 | 42..475 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:50 Download gff for
BS15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1650974..1651166 | 566..758 | 98 | -> | Minus |
arm_3R | 1651221..1651310 | 476..565 | 100 | -> | Minus |
arm_3R | 1651527..1651960 | 42..475 | 99 | | Minus |
BS15425.5prime Sequence
847 bp (797 high quality bases) assembled on 2006-12-21
> BS15425.5prime
GAAGTTATCCCTTTAGATGTCAGATTCGACTATTTTCCGTTTTAACTCAT
CCATTCTTGATCAGTCAGCGGACAGCAACGTATCCAGTTCGAGCTCCAAT
TCCAGTGTATCCGACTCTTCTGTGGACTCCCATTCATCCATAGAATCCAA
TTCGGGACACAATACATCCGTGGAATCTCAGTCATCCGCGGAATCTGATT
CATCCGCTGATTCCCATTCGTCCTTGGAACGCCCATCCCCAGTGGAGCGT
GATTTATCTGTGGAATCAGACTCATCTTCAGCCACCAATACCAGCGAATC
TTCAGTCGGAGAAGCTTCAAACCAACTGCAGTCACCGCAAAGCAATAACC
CCTTAAATATGGCTAACTTGTCTGTCTCGACTGAAGATGCTCATTCGCAG
ATCAGATCACTTACCCAGGATGTGATCCAGATGGAAGCAGAGTTGGATCG
CATGAATCGCTACTGCGAGGAAGTTGTGGCACAGATTGACACCTTCGCCA
CGAGAACCTCAACGCCAACAACTCGTAGAATTCGCCGCAGAACGAGTCCA
GTAGAAGTGATAGATCTGTCCCATTTGGACCGTGCACCACCTGTTCGATC
CGCTCGGAATCGTGATCCCGATGCTTTCATCGATCTATGCACCCCCGAAG
GCCCAAGAAGTCGCACAGTGAATCTTCACTCCAACGACTCCCTCACCATT
CTGCCACGTCGGTCAGCCGAAAATGACCCGGTAGTGGATCTCGACGTTGC
GTCGCCACCAAAACGCGTTAATCGCGACATTGATGAGTCCCAAAAAGAGG
AGTTATACAAGTGCCCCATCTGCATGGACAGTGTATCGAAGCGCGAG
BS15425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10981-PA | 960 | CG10981-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
CG10981-PB | 939 | CG10981-RB | 28..810 | 65..847 | 3915 | 100 | Plus |
CG10981-PB | 939 | CG10981-RB | 1..27 | 17..43 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RA | 1632 | CG10981-RA | 335..1165 | 17..847 | 4155 | 100 | Plus |
dgrn-RD | 1635 | CG10981-RD | 335..1168 | 17..847 | 4115 | 99.6 | Plus |
dgrn-RB | 1611 | CG10981-RB | 362..1144 | 65..847 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825036..5825444 | 44..452 | 2045 | 100 | Plus |
3R | 32079331 | 3R | 5825805..5826109 | 543..847 | 1525 | 100 | Plus |
3R | 32079331 | 3R | 5825499..5825588 | 453..542 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:29:54 has no hits.
BS15425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:32 Download gff for
BS15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:11 Download gff for
BS15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:24:53 Download gff for
BS15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 345..1175 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:22:48 Download gff for
BS15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 335..1165 | 17..847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:22:48 Download gff for
BS15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5824949..5824975 | 17..43 | 100 | -> | Plus |
3R | 5825036..5825444 | 44..452 | 100 | -> | Plus |
3R | 5825499..5825588 | 453..542 | 100 | -> | Plus |
3R | 5825805..5826109 | 543..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:24:53 Download gff for
BS15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1650671..1650697 | 17..43 | 100 | -> | Plus |
arm_3R | 1650758..1651166 | 44..452 | 100 | -> | Plus |
arm_3R | 1651221..1651310 | 453..542 | 100 | -> | Plus |
arm_3R | 1651527..1651831 | 543..847 | 100 | | Plus |
BS15425.pep Sequence
Translation from 16 to 975
> BS15425.pep
MSDSTIFRFNSSILDQSADSNVSSSSSNSSVSDSSVDSHSSIESNSGHNT
SVESQSSAESDSSADSHSSLERPSPVERDLSVESDSSSATNTSESSVGEA
SNQLQSPQSNNPLNMANLSVSTEDAHSQIRSLTQDVIQMEAELDRMNRYC
EEVVAQIDTFATRTSTPTTRRIRRRTSPVEVIDLSHLDRAPPVRSARNRD
PDAFIDLCTPEGPRSRTVNLHSNDSLTILPRRSAENDPVVDLDVASPPKR
VNRDIDESQKEELYKCPICMDSVSKREPVSTKCGHVFCRECIETAIRATH
KCPICNKKLTARQFFRIYL*
BS15425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-PA | 319 | CG10981-PA | 1..319 | 1..319 | 1617 | 100 | Plus |
dgrn-PB | 312 | CG10981-PB | 1..312 | 1..319 | 1566 | 97.8 | Plus |
dgrn-PD | 205 | CG10981-PD | 1..205 | 115..319 | 1070 | 100 | Plus |
CG43058-PA | 100 | CG43058-PA | 10..100 | 194..319 | 214 | 35.7 | Plus |
elfless-PC | 229 | CG15150-PC | 42..229 | 156..319 | 183 | 30.7 | Plus |