Clone Sequence Records
BS15427.3prime Sequence
783 bp (697 high quality bases) assembled on 2006-12-21
> BS15427.3prime
ATGGTCTAGAAAGCTTTCACTGGCTTTGGAAGGACAGCCAGCGAAAAACA
CAAGAACGATGTATTAAAAGACCAACTGTGGCCAATATTTGGAGATGCAG
GACCGCAATGGCTTCTAATGCCTGCAATAACGAGTAATTGGCCCTGACTG
TTCTGCGTCCCCTGGCGAAGATTGAGCTCCATGGCACGGAAGGCCCAAAT
ATCGAGGGTACGCGCCTGCTAACACACACGATGCACTCTTCTTTGAGGTG
GAGGATGCTTATGCTTACTTTGTGTTCAATGGTGGTCTGCTGGTTCTTGT
CCAGGTGCACCTTGACCAGCTGGGAGCCGTCGAGCTTGACGCGGATGCGC
TTGCCCACAATCTCGGCGGGGAAGACCAGATCCTCAAGGATGGCGTCGTA
CACAGCGGTCAGAGTCCTGGAGCGTGGACGCTTCTGCTTGAGGGGGTTGC
GGGCCTTGCGCGTGGGCTTGGGCAGGATCTTGCGCTCCGCAATCACGACG
ACGTGCTTGCCCGAGAACTTCTTCTCCAGCTCGCGGACCAGGATGATCTG
GATCTTCTGGAACACCTTCTGCTGTGGAATGGGCACGTAGATGATGACGG
CCTTCTTGCTGCCGAACTCGATCTCGCGGGCACGGGTGATGTGCAGATCG
CGCAGGTAGGGCTTCAGGTCGCTGTTGGCCTCGAGTTCCACCAACGCCTG
GGCAATGGACTTCTCGAAGTCATCGGGATCCGAGCCGCCGGGCTTGATAA
TCTTGGAGCCGATAGCCATGTCGACTGATAACT
BS15427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1883-PB | 753 | RpS7-RB | 1..753 | 769..17 | 3715 | 99.7 | Minus |
CG1883-PD | 585 | RpS7-RD | 1..503 | 769..267 | 2490 | 99.8 | Minus |
CG1883-PA | 585 | RpS7-RA | 1..503 | 769..267 | 2490 | 99.8 | Minus |
CG1883-PC | 585 | RpS7-RC | 1..503 | 769..267 | 2490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..540 | 769..267 | 2500 | 99.8 | Minus |
RpS7-RC | 978 | CG1883-RC | 286..788 | 769..267 | 2500 | 99.8 | Minus |
RpS7-RA | 725 | CG1883-RA | 33..535 | 769..267 | 2500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30207841..30208427 | 17..603 | 2905 | 99.7 | Plus |
3R | 32079331 | 3R | 30208489..30208657 | 601..769 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:46:39 has no hits.
BS15427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:36 Download gff for
BS15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-PB | 1..753 | 17..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:17 Download gff for
BS15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1883-PB | 1..753 | 17..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:47:53 Download gff for
BS15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..535 | 267..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:22 Download gff for
BS15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..535 | 267..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:22 Download gff for
BS15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30207841..30208425 | 17..601 | 99 | <- | Plus |
3R | 30208490..30208657 | 602..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:47:53 Download gff for
BS15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26033563..26034147 | 17..601 | 99 | <- | Plus |
arm_3R | 26034212..26034379 | 602..769 | 100 | | Plus |
BS15427.5prime Sequence
783 bp (783 high quality bases) assembled on 2006-12-21
> BS15427.5prime
GAAGTTATCCCTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTCGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAG
TGCATCGTGTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGT
GCCATGGAGCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATT
ACTCGTTATTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATA
TTGGCCACAGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCT
GTCCTTCCAAAGCCAGTGAAAGCTTTCTAGACC
BS15427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1883-PB | 753 | RpS7-RB | 1..753 | 17..769 | 3715 | 99.7 | Plus |
CG1883-PD | 585 | RpS7-RD | 1..503 | 17..519 | 2490 | 99.8 | Plus |
CG1883-PA | 585 | RpS7-RA | 1..503 | 17..519 | 2490 | 99.8 | Plus |
CG1883-PC | 585 | RpS7-RC | 1..503 | 17..519 | 2490 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..540 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RC | 978 | CG1883-RC | 286..788 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RA | 725 | CG1883-RA | 33..535 | 17..519 | 2500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30207841..30208427 | 769..183 | 2905 | 99.7 | Minus |
3R | 32079331 | 3R | 30208489..30208657 | 185..17 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 21:37:06 has no hits.
BS15427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:37 Download gff for
BS15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-PB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:18 Download gff for
BS15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1883-PB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:21:52 Download gff for
BS15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..535 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:23:33 Download gff for
BS15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..535 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:23:33 Download gff for
BS15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30207841..30208425 | 185..769 | 99 | <- | Minus |
3R | 30208490..30208657 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:21:52 Download gff for
BS15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26034212..26034379 | 17..184 | 100 | | Minus |
arm_3R | 26033563..26034147 | 185..769 | 99 | <- | Minus |
BS15427.complete Sequence
785 bp assembled on 2006-11-29
GenBank Submission: FJ637933
> BS15427.complete
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTCGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAG
TGCATCGTGTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGT
GCCATGGAGCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATT
ACTCGTTATTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATA
TTGGCCACAGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCT
GTCCTTCCAAAGCCAGTGAAAGCTTTCTAGACCAT
BS15427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 585 | CG1883-PE | 1..503 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RC | 585 | CG1883-PC | 1..503 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RA | 585 | CG1883-PA | 1..503 | 17..519 | 2500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..540 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RC | 978 | CG1883-RC | 286..788 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RA | 725 | CG1883-RA | 33..535 | 17..519 | 2500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30207841..30208427 | 769..183 | 2905 | 99.7 | Minus |
3R | 32079331 | 3R | 30208489..30208657 | 185..17 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:28:10 has no hits.
BS15427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:25 Download gff for
BS15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:54 Download gff for
BS15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RB | 16..779 | 10..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:41 Download gff for
BS15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..535 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:26 Download gff for
BS15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RB | 16..779 | 10..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:11 Download gff for
BS15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..535 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:11 Download gff for
BS15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30207842..30208425 | 185..768 | 99 | <- | Minus |
3R | 30208490..30208657 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:41 Download gff for
BS15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26033564..26034147 | 185..768 | 99 | <- | Minus |
arm_3R | 26034212..26034379 | 17..184 | 100 | | Minus |
BS15427.pep Sequence
Translation from 16 to 768
> BS15427.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVSISILHLKEECIVCVSRRVPSIFGPSVPWSSI
FARGRRTVRANYSLLQALEAIAVLHLQILATVGLLIHRSCVFRWLSFQSQ
*
BS15427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-PE | 194 | CG1883-PE | 1..168 | 1..168 | 835 | 100 | Plus |
RpS7-PC | 194 | CG1883-PC | 1..168 | 1..168 | 835 | 100 | Plus |
RpS7-PA | 194 | CG1883-PA | 1..168 | 1..168 | 835 | 100 | Plus |
RpS7-PD | 194 | CG1883-PD | 1..168 | 1..168 | 835 | 100 | Plus |