Clone BS15427 Report

Search the DGRC for BS15427

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptRpS7-RB
Protein status:BS15427.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15427.3prime Sequence

783 bp (697 high quality bases) assembled on 2006-12-21

> BS15427.3prime
ATGGTCTAGAAAGCTTTCACTGGCTTTGGAAGGACAGCCAGCGAAAAACA
CAAGAACGATGTATTAAAAGACCAACTGTGGCCAATATTTGGAGATGCAG
GACCGCAATGGCTTCTAATGCCTGCAATAACGAGTAATTGGCCCTGACTG
TTCTGCGTCCCCTGGCGAAGATTGAGCTCCATGGCACGGAAGGCCCAAAT
ATCGAGGGTACGCGCCTGCTAACACACACGATGCACTCTTCTTTGAGGTG
GAGGATGCTTATGCTTACTTTGTGTTCAATGGTGGTCTGCTGGTTCTTGT
CCAGGTGCACCTTGACCAGCTGGGAGCCGTCGAGCTTGACGCGGATGCGC
TTGCCCACAATCTCGGCGGGGAAGACCAGATCCTCAAGGATGGCGTCGTA
CACAGCGGTCAGAGTCCTGGAGCGTGGACGCTTCTGCTTGAGGGGGTTGC
GGGCCTTGCGCGTGGGCTTGGGCAGGATCTTGCGCTCCGCAATCACGACG
ACGTGCTTGCCCGAGAACTTCTTCTCCAGCTCGCGGACCAGGATGATCTG
GATCTTCTGGAACACCTTCTGCTGTGGAATGGGCACGTAGATGATGACGG
CCTTCTTGCTGCCGAACTCGATCTCGCGGGCACGGGTGATGTGCAGATCG
CGCAGGTAGGGCTTCAGGTCGCTGTTGGCCTCGAGTTCCACCAACGCCTG
GGCAATGGACTTCTCGAAGTCATCGGGATCCGAGCCGCCGGGCTTGATAA
TCTTGGAGCCGATAGCCATGTCGACTGATAACT

BS15427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1883-PB 753 RpS7-RB 1..753 769..17 3715 99.7 Minus
CG1883-PD 585 RpS7-RD 1..503 769..267 2490 99.8 Minus
CG1883-PA 585 RpS7-RA 1..503 769..267 2490 99.8 Minus
CG1883-PC 585 RpS7-RC 1..503 769..267 2490 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..540 769..267 2500 99.8 Minus
RpS7-RC 978 CG1883-RC 286..788 769..267 2500 99.8 Minus
RpS7-RA 725 CG1883-RA 33..535 769..267 2500 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30207841..30208427 17..603 2905 99.7 Plus
3R 32079331 3R 30208489..30208657 601..769 845 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:46:39 has no hits.

BS15427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:36 Download gff for BS15427.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-PB 1..753 17..769 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:17 Download gff for BS15427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1883-PB 1..753 17..769 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:47:53 Download gff for BS15427.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..535 267..776 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:22 Download gff for BS15427.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..535 267..776 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:22 Download gff for BS15427.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30207841..30208425 17..601 99 <- Plus
3R 30208490..30208657 602..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:47:53 Download gff for BS15427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26033563..26034147 17..601 99 <- Plus
arm_3R 26034212..26034379 602..769 100   Plus

BS15427.5prime Sequence

783 bp (783 high quality bases) assembled on 2006-12-21

> BS15427.5prime
GAAGTTATCCCTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTCGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAG
TGCATCGTGTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGT
GCCATGGAGCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATT
ACTCGTTATTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATA
TTGGCCACAGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCT
GTCCTTCCAAAGCCAGTGAAAGCTTTCTAGACC

BS15427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1883-PB 753 RpS7-RB 1..753 17..769 3715 99.7 Plus
CG1883-PD 585 RpS7-RD 1..503 17..519 2490 99.8 Plus
CG1883-PA 585 RpS7-RA 1..503 17..519 2490 99.8 Plus
CG1883-PC 585 RpS7-RC 1..503 17..519 2490 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..540 17..519 2500 99.8 Plus
RpS7-RC 978 CG1883-RC 286..788 17..519 2500 99.8 Plus
RpS7-RA 725 CG1883-RA 33..535 17..519 2500 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30207841..30208427 769..183 2905 99.7 Minus
3R 32079331 3R 30208489..30208657 185..17 845 100 Minus
Blast to na_te.dros performed on 2015-02-05 21:37:06 has no hits.

BS15427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:37 Download gff for BS15427.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-PB 1..753 17..769 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:18 Download gff for BS15427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1883-PB 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:21:52 Download gff for BS15427.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..535 17..519 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:23:33 Download gff for BS15427.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..535 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:23:33 Download gff for BS15427.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30207841..30208425 185..769 99 <- Minus
3R 30208490..30208657 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:21:52 Download gff for BS15427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26034212..26034379 17..184 100   Minus
arm_3R 26033563..26034147 185..769 99 <- Minus

BS15427.complete Sequence

785 bp assembled on 2006-11-29

GenBank Submission: FJ637933

> BS15427.complete
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTCGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAG
TGCATCGTGTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGT
GCCATGGAGCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATT
ACTCGTTATTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATA
TTGGCCACAGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCT
GTCCTTCCAAAGCCAGTGAAAGCTTTCTAGACCAT

BS15427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 585 CG1883-PE 1..503 17..519 2500 99.8 Plus
RpS7-RC 585 CG1883-PC 1..503 17..519 2500 99.8 Plus
RpS7-RA 585 CG1883-PA 1..503 17..519 2500 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..540 17..519 2500 99.8 Plus
RpS7-RC 978 CG1883-RC 286..788 17..519 2500 99.8 Plus
RpS7-RA 725 CG1883-RA 33..535 17..519 2500 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30207841..30208427 769..183 2905 99.7 Minus
3R 32079331 3R 30208489..30208657 185..17 845 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:28:10 has no hits.

BS15427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:25 Download gff for BS15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:54 Download gff for BS15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 16..779 10..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:41 Download gff for BS15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..535 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:26 Download gff for BS15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 16..779 10..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:11 Download gff for BS15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..535 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:11 Download gff for BS15427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30207842..30208425 185..768 99 <- Minus
3R 30208490..30208657 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:41 Download gff for BS15427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26033564..26034147 185..768 99 <- Minus
arm_3R 26034212..26034379 17..184 100   Minus

BS15427.pep Sequence

Translation from 16 to 768

> BS15427.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVSISILHLKEECIVCVSRRVPSIFGPSVPWSSI
FARGRRTVRANYSLLQALEAIAVLHLQILATVGLLIHRSCVFRWLSFQSQ
*

BS15427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-PE 194 CG1883-PE 1..168 1..168 835 100 Plus
RpS7-PC 194 CG1883-PC 1..168 1..168 835 100 Plus
RpS7-PA 194 CG1883-PA 1..168 1..168 835 100 Plus
RpS7-PD 194 CG1883-PD 1..168 1..168 835 100 Plus