Clone Sequence Records
BS15428.complete Sequence
986 bp assembled on 2010-02-09
GenBank Submission: KX802045
> BS15428.complete
GAAGTTATCAGTCGACATGTCCGCGACCGCCTCAAATCGCCAGCCGGTGC
CAAAATTTCCGGCCGCCATGCCGCGTGGAACGGGCACAGTGTGCTCCAAT
CCGGCGGTGCCCAAGTCGCCGGATGCCCTCACCTCCCTGGTGGCCCGGAA
GAGCATTACGTCCATGTCGGAGGAGGAGATCATTCAGGAGAATCTCAACG
AGATCCTCGACCTCAAGTCGCGCGAGGAGCGAAAAGCCAATGGACGTCTG
GTGGCTGTGATCGTCTGTTTTCTGGTGCTCTTCCTGGCTGTCTACCATGC
CTGCGTCCGGAAGTCGGAGAACTCGCTGGCTGGCGTCCTGGTACCGGCGG
GCATCATGCTCTCCTACGGCGCCTGGGTGGTCGTCCTGGCCAAGAGGGAC
AAGCACAGGCGTGCCATGTTTGAGCGGCACATCGAGGAGGTGACGCTAAA
GAACAAAATCGAGCTGGAGGAGAAGCATGCGCGCCACGCGAAGAAGGCGC
AATCGCATCATGGTCACTCCGGCACCGATTCCACGGGCAGTGCCTCCAGT
TCGCTGCACTACGTCAACGAGCTGCTGCCCAACGGTGGCGGTGAGCACCG
CAAGAAGCAGCGACGCCATCGTCACAAGGAGCGCTCCGTGGAGCGAGATG
ATCATCATCAACGTAGCCATCAGCGCTCGCATACGCCGGACATTGGCGTG
CATCGTGGAGCGCCCAAGAGGCCCAGTTTCCGGCAGAAGCTCTTCGGTCA
GACCATCGCCCATGTCAAACTGGTGGAGGCGCAGAGCGATAGCACGGATT
CAGCTGGCGCATCTGGTCCGGGTACGAGATCAGGTCGCAGTACGGTCGCC
AGTCCAGGTGGCCAGGCCAGTGCTGCGGCCAAGCTCAATCCCGGCGAGAA
ACGACAGCGACTACAGCGCCTGGACACGTTGCCACTGGCGCAGGTGGTGC
GTGTCAGCTCGATTCCGTGAAAGCTTTCTAGACCAT
BS15428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-RA | 954 | CG32599-PA | 1..954 | 17..970 | 4740 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-RA | 1233 | CG32599-RA | 143..1097 | 16..970 | 4745 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14245830..14246378 | 422..970 | 2745 | 100 | Plus |
X | 23542271 | X | 14243828..14244036 | 16..224 | 1045 | 100 | Plus |
X | 23542271 | X | 14245618..14245765 | 275..422 | 710 | 98.6 | Plus |
X | 23542271 | X | 14245248..14245299 | 224..275 | 260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 933..1027 | 645..739 | 113 | 62.9 | Plus |
BS15428.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:54 Download gff for
BS15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 1..953 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:56 Download gff for
BS15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 144..1096 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:06 Download gff for
BS15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 1..953 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:43 Download gff for
BS15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 144..1096 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:43 Download gff for
BS15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14243829..14244035 | 17..223 | 100 | -> | Plus |
X | 14245248..14245299 | 224..275 | 100 | -> | Plus |
X | 14245619..14245764 | 276..421 | 98 | -> | Plus |
X | 14245830..14246377 | 422..969 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:56 Download gff for
BS15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14137862..14138068 | 17..223 | 100 | -> | Plus |
arm_X | 14139281..14139332 | 224..275 | 100 | -> | Plus |
arm_X | 14139652..14139797 | 276..421 | 98 | -> | Plus |
arm_X | 14139863..14140410 | 422..969 | 100 | | Plus |
BS15428.3prime Sequence
848 bp (771 high quality bases) assembled on 2006-12-21
> BS15428.3prime
ATGGTCTAGAAAGCTTTCACGGAATCGAGCTGACACGCACCACCTGCGCC
AGTGGCAACGTGTCCAGGCGCTGTAGTCGCTGTCGTTTCTCGCCGGGATT
GAGCTTGGCCGCAGCACTGGCCTGGCCACCTGGACTGGCGACCGTACTGC
GACCTGATCTCGTACCCGGACCAGATGCGCCAGCTGAATCCGTGCTATCG
CTCTGCGCCTCCACCAGTTTGACATGGGCGATGGTCTGACCGAAGAGCTT
CTGCCGGAAACTGGGCCTCTTGGGCGCTCCACGATGCACGCCAATGTCCG
GCGTATGCGAGCGCTGATGGCTACGTTGATGATGATCATCTCGCTCCACG
GAGCGCTCCTTGTGACGATGGCGTCGCTGCTTCTTGCGGTGCTCACCGCC
ACCGTTGGGCAGCAGCTCGTTGACGTAGTGCAGCGAACTGGAGGCACTGC
CCGTGGAATCGGTGCCGGAGTGACCATGATGCGATTGCGCCTTCTTCGCG
TGGCGCGCATGCTTCTCCTCCAGCTCGATTTTGTTCTTTAGCGTCACCTC
CTCGATGTGCCGCTCAAACATGGCACGCCTGTGCTTGTCCCTCTTGGCCA
GGACGACCACCCAGGCGCCGTAGGAGAGCATGATGCCCGCCGGTACCAGG
ACGCCAGCCAGCGAGTTCTCCGACTTCCGGACGCAGGCATGGTAGACAGC
CAGGAAGAGCACCAGAAAACAGACGATCACAGCCACCAGACGTCCATTGG
CTTTTCGCTCCTCGCGCGACTTGAGGTCGAGGATCTCGTTGAGATTCTCC
TGAATGATCTCCTCCTCCGACATGGACGTAATGCTCTTCCGGGCCACA
BS15428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-PA | 954 | CG32599-RA | 124..954 | 847..17 | 4105 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-RA | 1233 | CG32599-RA | 267..1097 | 847..17 | 4125 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14245830..14246378 | 565..17 | 2745 | 100 | Minus |
X | 23542271 | X | 14245618..14245765 | 712..565 | 710 | 98.6 | Minus |
X | 23542271 | X | 14243952..14244036 | 847..763 | 425 | 100 | Minus |
X | 23542271 | X | 14245248..14245299 | 763..712 | 260 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 03:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 933..1027 | 342..248 | 113 | 62.9 | Minus |
BS15428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:38 Download gff for
BS15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-PA | 124..954 | 17..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:20 Download gff for
BS15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-PA | 124..954 | 17..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:29:46 Download gff for
BS15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 267..1097 | 17..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:07:37 Download gff for
BS15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 267..1097 | 17..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:07:37 Download gff for
BS15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14243952..14244035 | 764..847 | 100 | -> | Minus |
X | 14245248..14245299 | 712..763 | 100 | -> | Minus |
X | 14245619..14245764 | 566..711 | 98 | -> | Minus |
X | 14245830..14246378 | 17..565 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:29:46 Download gff for
BS15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14137985..14138068 | 764..847 | 100 | -> | Minus |
arm_X | 14139281..14139332 | 712..763 | 100 | -> | Minus |
arm_X | 14139652..14139797 | 566..711 | 98 | -> | Minus |
arm_X | 14139863..14140411 | 17..565 | 100 | | Minus |
BS15428.5prime Sequence
872 bp (748 high quality bases) assembled on 2006-12-21
> BS15428.5prime
GAAGTTATCACTCGACATGTCCGCGACCGCCTCAAATCGCCAGCCGGTGC
CAAAATTTCCGGCCGCCATGCCGCGTGGAACGGGCACAGTGTGCTCCAAT
CCGGCGGTGCCCAAGTCGCCGGATGCCCTCACCTCCCTGGTGGCCCGGAA
GAGCATTACGTCCATGTCGGAGGAGGAGATCATTCAGGAGAATCTCAACG
AGATCCTCGACCTCAAGTCGCGCGAGGAGCGAAAAGCCAATGGACGTCTG
GTGGCTGTGATCGTCTGTTTTCTGGTGCTCTTCCTGGCTGTCTACCATGC
CTGCGTCCGGAAGTCGGAGAACTCGCTGGCTGGCGTCCTGGTACCGGCGG
GCATCATGCTCTCCTACGGCGCCTGGGTGGTCGTCCTGGCCAAGAGGGAC
AAGCACAGGCGTGCCATGTTTGAGCGGCACATCGAGGAGGTGACGCTAAA
GAACAAAATCGAGCTGGAGGAGAAGCATGCGCGCCACGCGAAGAAGGCGC
AATCGCATCATGGTCACTCCGGCACCGATTCCACGGGCAGTGCCTCCAGT
TCGCTGCACTACGTCAACGAGCTGCTGCCCAACGGTGGCGGTGAGCACCG
CAAGAAGCAGCGACGCCATCGTCACAAGGAGCGCTCCGTGGAGCGAGATG
ATCATCATCAACGTAGCCATCAGCGCTCGCATACGCCGGACATTGGCGTG
CATCGTGGAGCGCCCAAGAGGCCCAGTTTCCGGCAGAAGCTCTTCGGTCA
GACCATCGCCCATGTCAAACTGGTGGAGGCGCAGAGCGATAGCACGGATT
CAGCTGGCGCATCTGGTCCGGGTACGAGATCAGGTCGCAGTACNGTCGCC
AGTCCAGGTGGCCAGGCCAGTG
BS15428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-PA | 954 | CG32599-RA | 1..856 | 17..872 | 4211 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-RA | 1233 | CG32599-RA | 143..999 | 16..872 | 4244 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14245830..14246280 | 422..872 | 2244 | 99.8 | Plus |
X | 23542271 | X | 14243828..14244036 | 16..224 | 1045 | 100 | Plus |
X | 23542271 | X | 14245618..14245765 | 275..422 | 710 | 98.6 | Plus |
X | 23542271 | X | 14245248..14245299 | 224..275 | 260 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 03:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 933..1027 | 645..739 | 113 | 62.9 | Plus |
BS15428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:39 Download gff for
BS15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:21 Download gff for
BS15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:56 Download gff for
BS15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 137..999 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:11:02 Download gff for
BS15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 137..999 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:11:02 Download gff for
BS15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14243822..14244035 | 9..223 | 98 | -> | Plus |
X | 14245248..14245299 | 224..275 | 100 | -> | Plus |
X | 14245619..14245764 | 276..421 | 98 | -> | Plus |
X | 14245830..14246280 | 422..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:56 Download gff for
BS15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14137855..14138068 | 9..223 | 98 | -> | Plus |
arm_X | 14139281..14139332 | 224..275 | 100 | -> | Plus |
arm_X | 14139652..14139797 | 276..421 | 98 | -> | Plus |
arm_X | 14139863..14140313 | 422..872 | 99 | | Plus |
BS15428.pep Sequence
Translation from 16 to 969
> BS15428.pep
MSATASNRQPVPKFPAAMPRGTGTVCSNPAVPKSPDALTSLVARKSITSM
SEEEIIQENLNEILDLKSREERKANGRLVAVIVCFLVLFLAVYHACVRKS
ENSLAGVLVPAGIMLSYGAWVVVLAKRDKHRRAMFERHIEEVTLKNKIEL
EEKHARHAKKAQSHHGHSGTDSTGSASSSLHYVNELLPNGGGEHRKKQRR
HRHKERSVERDDHHQRSHQRSHTPDIGVHRGAPKRPSFRQKLFGQTIAHV
KLVEAQSDSTDSAGASGPGTRSGRSTVASPGGQASAAAKLNPGEKRQRLQ
RLDTLPLAQVVRVSSIP*
BS15428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-PA | 317 | CG32599-PA | 1..317 | 1..317 | 1620 | 100 | Plus |