Clone BS15428 Report

Search the DGRC for BS15428

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG32599-RA
Protein status:BS15428.pep: full length peptide match
Sequenced Size:986

Clone Sequence Records

BS15428.complete Sequence

986 bp assembled on 2010-02-09

GenBank Submission: KX802045

> BS15428.complete
GAAGTTATCAGTCGACATGTCCGCGACCGCCTCAAATCGCCAGCCGGTGC
CAAAATTTCCGGCCGCCATGCCGCGTGGAACGGGCACAGTGTGCTCCAAT
CCGGCGGTGCCCAAGTCGCCGGATGCCCTCACCTCCCTGGTGGCCCGGAA
GAGCATTACGTCCATGTCGGAGGAGGAGATCATTCAGGAGAATCTCAACG
AGATCCTCGACCTCAAGTCGCGCGAGGAGCGAAAAGCCAATGGACGTCTG
GTGGCTGTGATCGTCTGTTTTCTGGTGCTCTTCCTGGCTGTCTACCATGC
CTGCGTCCGGAAGTCGGAGAACTCGCTGGCTGGCGTCCTGGTACCGGCGG
GCATCATGCTCTCCTACGGCGCCTGGGTGGTCGTCCTGGCCAAGAGGGAC
AAGCACAGGCGTGCCATGTTTGAGCGGCACATCGAGGAGGTGACGCTAAA
GAACAAAATCGAGCTGGAGGAGAAGCATGCGCGCCACGCGAAGAAGGCGC
AATCGCATCATGGTCACTCCGGCACCGATTCCACGGGCAGTGCCTCCAGT
TCGCTGCACTACGTCAACGAGCTGCTGCCCAACGGTGGCGGTGAGCACCG
CAAGAAGCAGCGACGCCATCGTCACAAGGAGCGCTCCGTGGAGCGAGATG
ATCATCATCAACGTAGCCATCAGCGCTCGCATACGCCGGACATTGGCGTG
CATCGTGGAGCGCCCAAGAGGCCCAGTTTCCGGCAGAAGCTCTTCGGTCA
GACCATCGCCCATGTCAAACTGGTGGAGGCGCAGAGCGATAGCACGGATT
CAGCTGGCGCATCTGGTCCGGGTACGAGATCAGGTCGCAGTACGGTCGCC
AGTCCAGGTGGCCAGGCCAGTGCTGCGGCCAAGCTCAATCCCGGCGAGAA
ACGACAGCGACTACAGCGCCTGGACACGTTGCCACTGGCGCAGGTGGTGC
GTGTCAGCTCGATTCCGTGAAAGCTTTCTAGACCAT

BS15428.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-RA 954 CG32599-PA 1..954 17..970 4740 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-RA 1233 CG32599-RA 143..1097 16..970 4745 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14245830..14246378 422..970 2745 100 Plus
X 23542271 X 14243828..14244036 16..224 1045 100 Plus
X 23542271 X 14245618..14245765 275..422 710 98.6 Plus
X 23542271 X 14245248..14245299 224..275 260 100 Plus
Blast to na_te.dros performed 2014-11-28 04:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 933..1027 645..739 113 62.9 Plus

BS15428.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:54 Download gff for BS15428.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..953 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:56 Download gff for BS15428.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 144..1096 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:06 Download gff for BS15428.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..953 17..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:43 Download gff for BS15428.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 144..1096 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:43 Download gff for BS15428.complete
Subject Subject Range Query Range Percent Splice Strand
X 14243829..14244035 17..223 100 -> Plus
X 14245248..14245299 224..275 100 -> Plus
X 14245619..14245764 276..421 98 -> Plus
X 14245830..14246377 422..969 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:56 Download gff for BS15428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14137862..14138068 17..223 100 -> Plus
arm_X 14139281..14139332 224..275 100 -> Plus
arm_X 14139652..14139797 276..421 98 -> Plus
arm_X 14139863..14140410 422..969 100   Plus

BS15428.3prime Sequence

848 bp (771 high quality bases) assembled on 2006-12-21

> BS15428.3prime
ATGGTCTAGAAAGCTTTCACGGAATCGAGCTGACACGCACCACCTGCGCC
AGTGGCAACGTGTCCAGGCGCTGTAGTCGCTGTCGTTTCTCGCCGGGATT
GAGCTTGGCCGCAGCACTGGCCTGGCCACCTGGACTGGCGACCGTACTGC
GACCTGATCTCGTACCCGGACCAGATGCGCCAGCTGAATCCGTGCTATCG
CTCTGCGCCTCCACCAGTTTGACATGGGCGATGGTCTGACCGAAGAGCTT
CTGCCGGAAACTGGGCCTCTTGGGCGCTCCACGATGCACGCCAATGTCCG
GCGTATGCGAGCGCTGATGGCTACGTTGATGATGATCATCTCGCTCCACG
GAGCGCTCCTTGTGACGATGGCGTCGCTGCTTCTTGCGGTGCTCACCGCC
ACCGTTGGGCAGCAGCTCGTTGACGTAGTGCAGCGAACTGGAGGCACTGC
CCGTGGAATCGGTGCCGGAGTGACCATGATGCGATTGCGCCTTCTTCGCG
TGGCGCGCATGCTTCTCCTCCAGCTCGATTTTGTTCTTTAGCGTCACCTC
CTCGATGTGCCGCTCAAACATGGCACGCCTGTGCTTGTCCCTCTTGGCCA
GGACGACCACCCAGGCGCCGTAGGAGAGCATGATGCCCGCCGGTACCAGG
ACGCCAGCCAGCGAGTTCTCCGACTTCCGGACGCAGGCATGGTAGACAGC
CAGGAAGAGCACCAGAAAACAGACGATCACAGCCACCAGACGTCCATTGG
CTTTTCGCTCCTCGCGCGACTTGAGGTCGAGGATCTCGTTGAGATTCTCC
TGAATGATCTCCTCCTCCGACATGGACGTAATGCTCTTCCGGGCCACA

BS15428.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-PA 954 CG32599-RA 124..954 847..17 4105 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-RA 1233 CG32599-RA 267..1097 847..17 4125 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14245830..14246378 565..17 2745 100 Minus
X 23542271 X 14245618..14245765 712..565 710 98.6 Minus
X 23542271 X 14243952..14244036 847..763 425 100 Minus
X 23542271 X 14245248..14245299 763..712 260 100 Minus
Blast to na_te.dros performed 2015-01-30 03:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 933..1027 342..248 113 62.9 Minus

BS15428.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:38 Download gff for BS15428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32599-PA 124..954 17..847 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:20 Download gff for BS15428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32599-PA 124..954 17..847 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:29:46 Download gff for BS15428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 267..1097 17..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:07:37 Download gff for BS15428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 267..1097 17..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:07:37 Download gff for BS15428.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14243952..14244035 764..847 100 -> Minus
X 14245248..14245299 712..763 100 -> Minus
X 14245619..14245764 566..711 98 -> Minus
X 14245830..14246378 17..565 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:29:46 Download gff for BS15428.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14137985..14138068 764..847 100 -> Minus
arm_X 14139281..14139332 712..763 100 -> Minus
arm_X 14139652..14139797 566..711 98 -> Minus
arm_X 14139863..14140411 17..565 100   Minus

BS15428.5prime Sequence

872 bp (748 high quality bases) assembled on 2006-12-21

> BS15428.5prime
GAAGTTATCACTCGACATGTCCGCGACCGCCTCAAATCGCCAGCCGGTGC
CAAAATTTCCGGCCGCCATGCCGCGTGGAACGGGCACAGTGTGCTCCAAT
CCGGCGGTGCCCAAGTCGCCGGATGCCCTCACCTCCCTGGTGGCCCGGAA
GAGCATTACGTCCATGTCGGAGGAGGAGATCATTCAGGAGAATCTCAACG
AGATCCTCGACCTCAAGTCGCGCGAGGAGCGAAAAGCCAATGGACGTCTG
GTGGCTGTGATCGTCTGTTTTCTGGTGCTCTTCCTGGCTGTCTACCATGC
CTGCGTCCGGAAGTCGGAGAACTCGCTGGCTGGCGTCCTGGTACCGGCGG
GCATCATGCTCTCCTACGGCGCCTGGGTGGTCGTCCTGGCCAAGAGGGAC
AAGCACAGGCGTGCCATGTTTGAGCGGCACATCGAGGAGGTGACGCTAAA
GAACAAAATCGAGCTGGAGGAGAAGCATGCGCGCCACGCGAAGAAGGCGC
AATCGCATCATGGTCACTCCGGCACCGATTCCACGGGCAGTGCCTCCAGT
TCGCTGCACTACGTCAACGAGCTGCTGCCCAACGGTGGCGGTGAGCACCG
CAAGAAGCAGCGACGCCATCGTCACAAGGAGCGCTCCGTGGAGCGAGATG
ATCATCATCAACGTAGCCATCAGCGCTCGCATACGCCGGACATTGGCGTG
CATCGTGGAGCGCCCAAGAGGCCCAGTTTCCGGCAGAAGCTCTTCGGTCA
GACCATCGCCCATGTCAAACTGGTGGAGGCGCAGAGCGATAGCACGGATT
CAGCTGGCGCATCTGGTCCGGGTACGAGATCAGGTCGCAGTACNGTCGCC
AGTCCAGGTGGCCAGGCCAGTG

BS15428.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-PA 954 CG32599-RA 1..856 17..872 4211 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-RA 1233 CG32599-RA 143..999 16..872 4244 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14245830..14246280 422..872 2244 99.8 Plus
X 23542271 X 14243828..14244036 16..224 1045 100 Plus
X 23542271 X 14245618..14245765 275..422 710 98.6 Plus
X 23542271 X 14245248..14245299 224..275 260 100 Plus
Blast to na_te.dros performed 2015-01-30 03:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 933..1027 645..739 113 62.9 Plus

BS15428.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:39 Download gff for BS15428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32599-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:21 Download gff for BS15428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32599-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:56 Download gff for BS15428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 137..999 9..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:11:02 Download gff for BS15428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 137..999 9..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:11:02 Download gff for BS15428.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14243822..14244035 9..223 98 -> Plus
X 14245248..14245299 224..275 100 -> Plus
X 14245619..14245764 276..421 98 -> Plus
X 14245830..14246280 422..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:56 Download gff for BS15428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14137855..14138068 9..223 98 -> Plus
arm_X 14139281..14139332 224..275 100 -> Plus
arm_X 14139652..14139797 276..421 98 -> Plus
arm_X 14139863..14140313 422..872 99   Plus

BS15428.pep Sequence

Translation from 16 to 969

> BS15428.pep
MSATASNRQPVPKFPAAMPRGTGTVCSNPAVPKSPDALTSLVARKSITSM
SEEEIIQENLNEILDLKSREERKANGRLVAVIVCFLVLFLAVYHACVRKS
ENSLAGVLVPAGIMLSYGAWVVVLAKRDKHRRAMFERHIEEVTLKNKIEL
EEKHARHAKKAQSHHGHSGTDSTGSASSSLHYVNELLPNGGGEHRKKQRR
HRHKERSVERDDHHQRSHQRSHTPDIGVHRGAPKRPSFRQKLFGQTIAHV
KLVEAQSDSTDSAGASGPGTRSGRSTVASPGGQASAAAKLNPGEKRQRLQ
RLDTLPLAQVVRVSSIP*

BS15428.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-PA 317 CG32599-PA 1..317 1..317 1620 100 Plus