Clone Sequence Records
BS15432.3prime Sequence
859 bp (761 high quality bases) assembled on 2006-12-21
> BS15432.3prime
ATGGTCTAGAAAGCTTTTACCATCGTGGGCGTATCTCCTTGAACCACCAC
TGCTGGTAGCTATCGTTAACATCGCAGTGACCCAATGACAATTGCTGCGT
GGCCGGATGCAGGGCCATGCATTTCTTGTGGACGCGATGCATCAGGTGCT
TCGTGTGCTCGTTGTACTGCCAAGGACCGTCGACTGTCCCCAGACGACAC
ACGGCCAGTTTGATGCCCTGCCGATCGGCCTCCACGCAGCGCTCGCCGAC
GCCCAACTGGCCAGCGGCATTGAGCCGAACCAGTTGATTATTTCCGCCTC
CATGGCAGTATGTGAGGCCCATGATGGCCGGCGGCTGGTGGCCCATCGAG
TCCAGGCATCCGTCGGAGGCCACCGAGCGCAGCTCGCCCCAGTGCAGGTT
GGCCGGCAGACCCGGGAACTTGTCGTACACATCGTAGGCGATGTGGTCCA
TGAACCACTGGAAGCTCTTGCAGTTCAGTCGCTTCTTCAGCGCCAGTTGC
TCGCTAATGTCGCCCATGTCCAGGTAGCGGGCAAGCGGCTCGCGCGTATA
GAAGTACTCCTTGTGCGTGTCGTCGAACCACGTCTCGATGACGCGCTTGT
AGTTGATCGTGATCAATGGACCCTTCTTCTTGCTAGCCAGTTTGCCGAAA
TTGTAGGGCATAAAGCCGCGATAGACGTGACCCACGCGAGAGCATGGCAC
CCACTCGATGCTGCCGCCACACTGCCAGATCTTGAAGCTCAATTCGAAGT
TCTCGCCGCCCCAGACCAGCAGACCCGGATCGTAGGCGCCCAGCTCCAGG
AAGTACTCCCTATTGATGGCGAACAGGCCGCCGGCGTGCGTGGGACTGCG
ATAGGGTTC
BS15432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6394-PA | 1776 | GalNAc-T2-RA | 934..1776 | 859..17 | 4190 | 99.8 | Minus |
| CG6394-PB | 1776 | GalNAc-T2-RB | 934..1776 | 859..17 | 4190 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:11:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 3668 | CG6394-RC | 1484..2326 | 859..17 | 4200 | 99.9 | Minus |
| GalNAc-T2-RB | 3437 | CG6394-RB | 1370..2212 | 859..17 | 4200 | 99.9 | Minus |
| GalNAc-T2-RA | 2537 | CG6394-RA | 1370..2212 | 859..17 | 4200 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18496409..18497251 | 17..859 | 4200 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-30 03:11:44 has no hits.
BS15432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:46 Download gff for
BS15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6394-PA | 934..1776 | 17..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:33 Download gff for
BS15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6394-PB | 934..1776 | 17..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:09 Download gff for
BS15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 1370..2212 | 17..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:08:41 Download gff for
BS15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 1370..2212 | 17..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:08:41 Download gff for
BS15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18496409..18497251 | 17..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:09 Download gff for
BS15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18390442..18391284 | 17..859 | 99 | | Plus |
BS15432.5prime Sequence
834 bp (819 high quality bases) assembled on 2006-12-21
> BS15432.5prime
GAAGTTATCACTCGACATGCGCGTGAGCACCATCCGCAGCGGTCGGATCT
GCCGGCTGGCATTGTGCCTGCTGGTACTGCTGCCGCTGCTGTATCTGCTG
GCCAACTGGAGCGATCACCACAAGCGCGTCCAGGAGGCGTATCACACGCG
CTTCGGCGGACCCAAGTTCGCCCACCAGCGATTGGAGGGCAGGCCCAGGG
AGGTGCCCAAGCTGGTCGATGGCCTTGGCAACTTTGAGCCGAAAGATGTG
AAGCCACGTAGCGGGCCTGGCGAGAATGGCGAGGCCCACAGCCTGTCGCC
GGACAAGAAGCACATGTCGGACGCCTCCGAGATGGAGTACGGCATGAACA
TCGCCTGCTCCGATGAGATATCGATGCACCGATCGGTGCGGGACACGCGG
CTCGAAGAGTGCCGCCACTGGGACTACCCCTTCGATCTGCCGCGCACGAG
CGTCATCATTGTCTTCCACAACGAGGGCTTCTCGGTGCTGATGCGCACCG
TGCACTCGGTCATCGATCGTTCGCCCACGCACATGCTGCACGAGATCATC
CTGGTGGATGACTTCTCCGACAAGGAGAACCTGCGCAGCCAGCTGGACGA
GTATGTGCTGCAGTTCAAGGGGCTGGTCAAGGTCATCAGGAACAAGGAGC
GCGAAGGTCTCATCCGAACGAGATCCAGGGGAGCCATGGAGGCTACAGGT
GAGGTGATCGTCTTCTTGGACGCCCATTGCGAGGTAAACACCAACTGGCT
GCCGCCCTTGCTGGCGCCCATCTACCGGGATCGCACTGTGATGACAGTGC
CCATTATCGATGGCATTGACCACNAGAACTTTGA
BS15432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6394-PA | 1776 | GalNAc-T2-RA | 1..818 | 17..834 | 4071 | 99.8 | Plus |
| CG6394-PB | 1776 | GalNAc-T2-RB | 1..818 | 17..834 | 4071 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 3668 | CG6394-RC | 551..1368 | 17..834 | 4079 | 99.9 | Plus |
| GalNAc-T2-RB | 3437 | CG6394-RB | 437..1254 | 17..834 | 4079 | 99.9 | Plus |
| GalNAc-T2-RA | 2537 | CG6394-RA | 437..1254 | 17..834 | 4079 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18497942..18498422 | 701..221 | 2405 | 100 | Minus |
| X | 23542271 | X | 18499231..18499436 | 222..17 | 1030 | 100 | Minus |
| X | 23542271 | X | 18497367..18497505 | 834..696 | 684 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:57:54 has no hits.
BS15432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:48 Download gff for
BS15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6394-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:36 Download gff for
BS15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6394-PB | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:22:05 Download gff for
BS15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 434..1253 | 14..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:05:34 Download gff for
BS15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 434..1253 | 14..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:05:34 Download gff for
BS15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18499232..18499439 | 14..221 | 99 | | Minus |
| X | 18497368..18497502 | 699..833 | 99 | <- | Minus |
| X | 18497945..18498421 | 222..698 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:22:05 Download gff for
BS15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18391401..18391535 | 699..833 | 99 | <- | Minus |
| arm_X | 18391978..18392454 | 222..698 | 100 | <- | Minus |
| arm_X | 18393265..18393472 | 14..221 | 99 | | Minus |
BS15432.complete Sequence
1808 bp assembled on 2010-05-14
GenBank Submission: KX800767
> BS15432.complete
GAAGTTATCAGTCGACATGCGCGTGAGCACCATCCGCAGCGGTCGGATCT
GCCGGCTGGCATTGTGCCTGCTGGTACTGCTGCCGCTGCTGTATCTGCTG
GCCAACTGGAGCGATCACCACAAGCGCGTCCAGGAGGCGTATCACACGCG
CTTCGGCGGACCCAAGTTCGCCCACCAGCGATTGGAGGGCAGGCCCAGGG
AGGTGCCCAAGCTGGTCGATGGCCTTGGCAACTTTGAGCCGAAAGATGTG
AAGCCACGTAGCGGGCCTGGCGAGAATGGCGAGGCCCACAGCCTGTCGCC
GGACAAGAAGCACATGTCGGACGCCTCCGAGATGGAGTACGGCATGAACA
TCGCCTGCTCCGATGAGATATCGATGCACCGATCGGTGCGGGACACGCGG
CTCGAAGAGTGCCGCCACTGGGACTACCCCTTCGATCTGCCGCGCACGAG
CGTCATCATTGTCTTCCACAACGAGGGCTTCTCGGTGCTGATGCGCACCG
TGCACTCGGTCATCGATCGTTCGCCCACGCACATGCTGCACGAGATCATC
CTGGTGGATGACTTCTCCGACAAGGAGAACCTGCGCAGCCAGCTGGACGA
GTATGTGCTGCAGTTCAAGGGGCTGGTCAAGGTCATCAGGAACAAGGAGC
GCGAAGGTCTCATCCGAACGAGATCCAGGGGAGCCATGGAGGCTACAGGT
GAGGTGATCGTCTTCTTGGACGCCCATTGCGAGGTAAACACCAACTGGCT
GCCGCCCTTGCTGGCGCCCATCTACCGGGATCGCACTGTGATGACAGTGC
CCATTATCGATGGCATTGACCACAAGAACTTTGAGTACCGGCCGGTTTAT
GGCACGGACAACCACTTCCGCGGCATCTTCGAATGGGGCATGCTGTACAA
GGAGAACGAGGTGCCACGTCGCGAGCAGCGCCGCCGTGCTCACAACTCGG
AACCCTATCGCAGTCCCACGCACGCCGGCGGCCTGTTCGCCATCAATAGG
GAGTACTTCCTGGAGCTGGGCGCCTACGATCCGGGTCTGCTGGTCTGGGG
CGGCGAGAACTTCGAATTGAGCTTCAAGATCTGGCAGTGTGGCGGCAGCA
TCGAGTGGGTGCCATGCTCTCGCGTGGGTCACGTCTATCGCGGCTTTATG
CCCTACAATTTCGGCAAACTGGCTAGCAAGAAGAAGGGTCCATTGATCAC
GATCAACTACAAGCGCGTCATCGAGACGTGGTTCGACGACACGCACAAGG
AGTACTTCTATACGCGCGAGCCGCTTGCCCGCTACCTGGACATGGGCGAC
ATTAGCGAGCAACTGGCGCTGAAGAAGCGACTGAACTGCAAGAGCTTCCA
GTGGTTCATGGACCACATCGCCTACGATGTGTACGACAAGTTCCCGGGTC
TGCCGGCCAACCTGCACTGGGGCGAGCTGCGCTCGGTGGCCTCCGACGGA
TGCCTGGACTCGATGGGCCACCAGCCGCCGGCCATCATGGGCCTCACATA
CTGCCATGGAGGCGGAAATAATCAACTGGTTCGGCTCAATGCCGCTGGCC
AGTTGGGCGTCGGCGAGCGCTGCGTGGAGGCCGATCGGCAGGGCATCAAA
CTGGCCGTGTGTCGTCTGGGGACAGTCGACGGTCCTTGGCAGTACAACGA
GCACACGAAGCACCTGATGCATCGCGTCCACAAGAAATGCATGGCCCTGC
ATCCGGCCACGCAGCAATTGTCATTGGGTCACTGCGATGTTAACGATAGC
TACCAGCAGTGGTGGTTCAAGGAGATACGCCCACGCTGGTAAAAGCTTTC
TAGACCAT
BS15432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 1776 | CG6394-PC | 1..1776 | 17..1792 | 8880 | 100 | Plus |
| GalNAc-T2-RB | 1776 | CG6394-PB | 1..1776 | 17..1792 | 8880 | 100 | Plus |
| GalNAc-T2-RA | 1776 | CG6394-PA | 1..1776 | 17..1792 | 8880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 3668 | CG6394-RC | 551..2326 | 17..1792 | 8880 | 100 | Plus |
| GalNAc-T2-RB | 3437 | CG6394-RB | 437..2212 | 17..1792 | 8880 | 100 | Plus |
| GalNAc-T2-RA | 2537 | CG6394-RA | 437..2212 | 17..1792 | 8880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18496409..18497505 | 1792..696 | 5485 | 100 | Minus |
| X | 23542271 | X | 18497942..18498422 | 701..221 | 2405 | 100 | Minus |
| X | 23542271 | X | 18499231..18499436 | 222..17 | 1030 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:58:49 has no hits.
BS15432.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-14 09:55:38 Download gff for
BS15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RB | 434..2207 | 17..1790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:30 Download gff for
BS15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 437..2210 | 17..1790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:24 Download gff for
BS15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 437..2210 | 17..1790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:24 Download gff for
BS15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18496411..18497502 | 699..1790 | 100 | <- | Minus |
| X | 18497945..18498421 | 222..698 | 100 | <- | Minus |
| X | 18499232..18499436 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:30 Download gff for
BS15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18390444..18391535 | 699..1790 | 100 | <- | Minus |
| arm_X | 18391978..18392454 | 222..698 | 100 | <- | Minus |
| arm_X | 18393265..18393469 | 17..221 | 100 | | Minus |
BS15432.pep Sequence
Translation from 16 to 1791
> BS15432.pep
MRVSTIRSGRICRLALCLLVLLPLLYLLANWSDHHKRVQEAYHTRFGGPK
FAHQRLEGRPREVPKLVDGLGNFEPKDVKPRSGPGENGEAHSLSPDKKHM
SDASEMEYGMNIACSDEISMHRSVRDTRLEECRHWDYPFDLPRTSVIIVF
HNEGFSVLMRTVHSVIDRSPTHMLHEIILVDDFSDKENLRSQLDEYVLQF
KGLVKVIRNKEREGLIRTRSRGAMEATGEVIVFLDAHCEVNTNWLPPLLA
PIYRDRTVMTVPIIDGIDHKNFEYRPVYGTDNHFRGIFEWGMLYKENEVP
RREQRRRAHNSEPYRSPTHAGGLFAINREYFLELGAYDPGLLVWGGENFE
LSFKIWQCGGSIEWVPCSRVGHVYRGFMPYNFGKLASKKKGPLITINYKR
VIETWFDDTHKEYFYTREPLARYLDMGDISEQLALKKRLNCKSFQWFMDH
IAYDVYDKFPGLPANLHWGELRSVASDGCLDSMGHQPPAIMGLTYCHGGG
NNQLVRLNAAGQLGVGERCVEADRQGIKLAVCRLGTVDGPWQYNEHTKHL
MHRVHKKCMALHPATQQLSLGHCDVNDSYQQWWFKEIRPRW*
BS15432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-PC | 591 | CG6394-PC | 1..591 | 1..591 | 3238 | 100 | Plus |
| GalNAc-T2-PB | 591 | CG6394-PB | 1..591 | 1..591 | 3238 | 100 | Plus |
| GalNAc-T2-PA | 591 | CG6394-PA | 1..591 | 1..591 | 3238 | 100 | Plus |
| pgant6-PC | 666 | CG2103-PC | 133..647 | 73..584 | 969 | 41.2 | Plus |
| pgant6-PB | 666 | CG2103-PB | 133..647 | 73..584 | 969 | 41.2 | Plus |
