Clone Sequence Records
BS15433.3prime Sequence
883 bp (829 high quality bases) assembled on 2006-12-21
> BS15433.3prime
ATGGTCTAGAAAGCTTCTACGCATTTTTCTTATTACCGGCGCTGATTTTG
TCTTTGGTGCGGCTGTTTATCAGTTTAATGACCACATTCCTTTGGGCCAT
CTCCGATTTGCTGTACTCATCTAGGAACGTCAAATCGAAGTCCTTGCTGA
GGAACTCTCTGGCTGGCGGATTGTTGAAGGAAACCGTGACCAGGAAGGGA
TAAATCACAGGGTTAAACTGGGGTGGGCAGCTTGGCCATCCTCTTGAAGA
TCACGGCATACTGCTCAGATATCAGCAGGTCCTGATGTCTGCGATTGTTA
ACGCAGAAAAAGGCCATCGAGGCGACAAGGTCAATCAGCATTGGGCAGCT
CTCGCTGTTCGTTGTCCATTGGTCATTCACTAAACTGCAGTTCAGGATGA
CGGTCATCACGTCCAACAGCTTCAGCGACAAAGGACCCTCCACAGTTAGG
GTCTCCTGGAAGGTGTTCACATCCAAGGAGGCCAGGGACACGTAGAGATG
AAAAGTCGATGCCGCCAGGGCGGTCGTGCGTGGTGGAATGCATTCACCCA
TTGGCATCACGCAGCCATAGAGCATCGAAACGGTTCCAAAGAGCTCAGTG
GACTTGGCCGCGCTCAGCAGACGTGTCGGATCGGCAGGACCCGGCTGGCA
AACATCAATGAAGCGGGACAGGAAGCCCAAAGTGGTCAGCAGACTCAGCA
TCACACTCTTGTTGCTCTCGATGGACTCCCGCACCTTCTGAATGCGACGG
GAAAGGATTTCGATCAAGCCCGTAATCACAGCATAGTTTATCATGTCCGG
CAGGCGTTCCGGAACTTTTGGGTGGGTGTTCTTTTTCACGTAACTCGAGG
ACAGCGCCTCCGTGCAGGCCAGCATTAGCTCCG
BS15433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18397-PA | 5199 | CG18397-RA | 4334..4996 | 883..221 | 3315 | 100 | Minus |
| CG18397-PA | 5199 | CG18397-RA | 4994..5199 | 222..17 | 1030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp3-RB | 6318 | CG18397-RB | 4822..5688 | 883..16 | 4315 | 99.9 | Minus |
| ssp3-RA | 6146 | CG18397-RA | 4828..5694 | 883..16 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18917190..18917519 | 128..458 | 1605 | 99.7 | Plus |
| 2L | 23513712 | 2L | 18920469..18920616 | 639..786 | 740 | 100 | Plus |
| 2L | 23513712 | 2L | 18916977..18917089 | 16..128 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 18920275..18920372 | 544..641 | 490 | 100 | Plus |
| 2L | 23513712 | 2L | 18936425..18936521 | 787..883 | 485 | 100 | Plus |
| 2L | 23513712 | 2L | 18919924..18920017 | 455..548 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:45:58 has no hits.
BS15433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:49 Download gff for
BS15433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18397-PA | 4334..5199 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:38 Download gff for
BS15433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18397-PA | 4334..5199 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:53:09 Download gff for
BS15433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp3-RA | 4828..5694 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:10:08 Download gff for
BS15433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp3-RA | 4828..5694 | 16..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:10:08 Download gff for
BS15433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18916977..18917088 | 16..127 | 100 | <- | Plus |
| 2L | 18917190..18917516 | 128..455 | 99 | <- | Plus |
| 2L | 18919925..18920016 | 456..547 | 100 | <- | Plus |
| 2L | 18920279..18920371 | 548..640 | 100 | <- | Plus |
| 2L | 18920471..18920616 | 641..786 | 100 | <- | Plus |
| 2L | 18936425..18936521 | 787..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:53:09 Download gff for
BS15433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18916977..18917088 | 16..127 | 100 | <- | Plus |
| arm_2L | 18917190..18917516 | 128..455 | 99 | <- | Plus |
| arm_2L | 18919925..18920016 | 456..547 | 100 | <- | Plus |
| arm_2L | 18920279..18920371 | 548..640 | 100 | <- | Plus |
| arm_2L | 18920471..18920616 | 641..786 | 100 | <- | Plus |
| arm_2L | 18936425..18936521 | 787..883 | 100 | | Plus |
BS15433.5prime Sequence
778 bp (748 high quality bases) assembled on 2006-12-21
> BS15433.5prime
GAAGTTATCACTCGACATGGAAATGCGTGAGGTCTTGAGTCGCGAGGGCA
GAGAGGCGAAAAATCTGCTCGTCTACCAGTTTTGCGATGAGACAACCTCA
AGTGGTGCTACCAGTGGTTTCGGATCCACGGGCGGCGACGTTGGAGGAGG
ATCAGGTGGCGATGGACCAGCTGTTGGAAGCGGAGGCGTTCTTTTAAACG
GTGACTGCTATCGAAAGCCACCCATGGTGCCACCGAAGTCGCCCAACGGC
ACGCCCAAAAACTGTCAATCGCCCACTTCCCCACGTCTGAAATCCTCTGC
CAGTGTAGGATGCGGCGGAGGCAGTAGTGGTGGGCCACGCGTGCGCAGCG
CCTCCACAGGAAGGGACAAGAAGTCGGAGCTGCAGGCCAGATACTGGGCC
TTGCTATTCGGAAATTTGCAGAGAGCTATTAATGAGATTTATCAGACAGT
GGAGTGCTATGAAAACATTTCCAGTTGCCAAGAGACTATTTTGGTGCTTG
AAAACTATGTGCGAGATTTTAAGGCGCTTTGCGAATGGTTCAAAGTGTCG
TGGGACTATGAATCTCGACCACTACAACAGCGTCCCCAAAGCCTGGCTTG
GGAAGTGCGCAAGAGCAATCCCACTCCCAGAGTTCGGACTAGAAGTCTCT
GCAGCCCCAACAACTCGGGCAAATCCAGTCCAGCCTTGTTTCCGGGTACT
CAATCCGGAGAAACCTCACCGTTCTGTGATAATGGACAGATTTCGCCCAG
GAAATTACTGCGTGCCTATGACCAAGTG
BS15433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18397-PA | 5199 | CG18397-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp3-RA | 6146 | CG18397-RA | 495..1256 | 17..778 | 3810 | 100 | Plus |
| ssp3-RB | 6318 | CG18397-RB | 495..1250 | 17..778 | 3710 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18942387..18942958 | 778..207 | 2860 | 100 | Minus |
| 2L | 23513712 | 2L | 18943276..18943466 | 207..17 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:05:30 has no hits.
BS15433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:50 Download gff for
BS15433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18397-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:40 Download gff for
BS15433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18397-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:40:35 Download gff for
BS15433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp3-RA | 495..1256 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:02 Download gff for
BS15433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp3-RA | 495..1256 | 17..778 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:02 Download gff for
BS15433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18942387..18942958 | 207..778 | 100 | <- | Minus |
| 2L | 18943277..18943466 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:40:35 Download gff for
BS15433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18942387..18942958 | 207..778 | 100 | <- | Minus |
| arm_2L | 18943277..18943466 | 17..206 | 100 | | Minus |
BS15433.complete Sequence
5231 bp assembled on 2009-12-07
GenBank Submission: KX802497
> BS15433.complete
GAAGTTATCACTCGACATGGAAATGCGTGAGGTCTTGAGTCGCGAGGGCA
GAGAGGCGAAAAATCTGCTCGTCTACCAGTTTTGCGATGAGACAACCTCA
AGTGGTGCTACCAGTGGTTTCGGATCCACGGGCGGCGACGTTGGAGGAGG
ATCAGGTGGCGATGGACCAGCTGTTGGAAGCGGAGGCGTTCTTTTAAACG
GTGACTGCTATCGAAAGCCACCCATGGTGCCACCGAAGTCGCCCAACGGC
ACGCCCAAAAACTGTCAATCGCCCACTTCCCCACGTCTGAAATCCTCTGC
CAGTGTAGGATGCGGCGGAGGCAGTAGTGGTGGGCCACGCGTGCGCAGCG
CCTCCACAGGAAGGGACAAGAAGTCGGAGCTGCAGGCCAGATACTGGGCC
TTGCTATTCGGAAATTTGCAGAGAGCTATTAATGAGATTTATCAGACAGT
GGAGTGCTATGAAAACATTTCCAGTTGCCAAGAGACTATTTTGGTGCTTG
AAAACTATGTGCGAGATTTTAAGGCGCTTTGCGAATGGTTCAAAGTGTCG
TGGGACTATGAATCTCGACCACTACAACAGCGTCCCCAAAGCCTGGCTTG
GGAAGTGCGCAAGAGCAATCCCACTCCCAGAGTTCGGACTAGAAGTCTCT
GCAGCCCCAACAACTCGGGCAAATCCAGTCCAGCCTTGTTTCCGGGTACT
CAATCCGGAGAAACCTCACCGTTCTGTGATAATGGACAGATTTCGCCCAG
GAAATTACTGCGTGCCTATGACCAAGTGCCAAAGGGAGCAATGCGACTGA
ATGTCAGAGAACTTTTTGCAGCCAGCAAGAGAGCTACTCAAGGATCATCT
CAATCTGATAACATGGAGGGTCCTCTAGATTTAAGTGGCGACAAATCTAA
TTTCGTGTTGCGCAGCACGCAGTATGCCCAAACGGATTTGGAGGATCCAC
ATCTAACTCTGGCGGATGTCAGGGAGAAAATGCGCATGGAGGCGGAGGAA
AGAGAAGCTCAAAATAGAATTGAAAATGAGGCTTTAGAAGAAGTGACCAT
TCCAATAGACAATGAAGACGCAACGGAAAGCTTAAACAAACAAGAGCCAT
CTTCGCTCGAACTACCAATTCATAACGTAGCGGATTTAAGCAAAGAACCT
GAATTAATGGAAGCAGCTTCAGAAGCAACTGCTCTAGAGATGACTGTGGC
TTCTCTGGAGTCTATGGAAAACGCCTTACTTAATCAGCAGGCAAATAAGG
AGCCCACGCCGCCAAGCACTGTCATTAAACCACTTGCGGAAATTTTGAAG
AAACCACAACCCTTAAATCCTTTATCAGGAAACAATGTTCAAAACAGTCC
CCTTAAGTATTCCAGTGTGCTAAATCGTCCTTCGAAGAAGATGATTCCAC
CACCTGGAGGAGTAGCAGCTCAGAAGACCATATCAACCAAACCGGGTCTG
GTAAAACCGAATTTAACGACTACAGTCAATGGTTTACGTAGCACCAAAAC
AGCTACAGCTCCTCCTGCAATAAAAACAACTGGAAGAAGTGGATTACAGC
GACATCCCAGGCCCTCCAGCAAAACCGAGTGCTATGGTCCACCCAACAAT
GTGGCATCTAGATTGTCGGCACGCTCCCGAACCATGTTGGAAATAAATGG
AAGAAACACCAATTCAAGTGCTAGAACTTTACCGAAGAAAACTAATCCAG
GTTCCATTTTAAGCACGGCCACACGAACTAAAATGAGTTCCAGACTAAGT
TCTAGAGAGGATATAACTAGTTCCACATCCACTCTGAAAGCTAGCAATGA
ACAACTTTCAAATTCAAGAAACACTTTGAAGGCGGAGAATCAACATTCCG
AACCAAAACAGATTCAACCTCCGACTGATGCTGACGATGGATGGTTGACT
GTAAAAAACCGAAGAAGGACCAGCATGCATTGGGCAAACAGATTCAATCA
GCCCACAGGCTATGCCAGTTTGCCGACGTTGGCGTTGTTGAACGAGCAGC
AAAAGGAGCAGGAGCACAAAGAAAAGCAGAAAGGCGAAGACGACGGCAAA
GTTATCGTCAAAACAATATCGGCTAAAACTAAAGCTCCAATCGAAGTGGC
TAAGGCTAAAGCGAAGACATCAATAGTCATAACGCGACCAGAAATCAAAA
ATGCCAAAGCTAAGGTTAATTCATTTCCCGTTCAGAAAAGCAACACTAAT
CAAGTGAAGAAACCAGAGAAGCAGGAAAAGTCTGACACCACAGCTCCCGC
AGCAATTGCTTCCTCAAGTAACACTCGTAACAGCAGCCACAGTATTTGTG
TTGGACGCAATTCCATTATCAAACGACAGAAATCTGATCTTACAGGGCTT
AAAATGACATCCTTGCACAAGGAGTACATGAGGAGTGAGAAGAATGCGCT
GAGAAAACTACAACAAAAGGAGCAGGGCAACCAGCAACACAACAGCAGCT
CCTCTTCCGCGGAAACCGTAGTGGAATCCTGCAATGAAGACCATAGCAAG
ATCGATATTAAGATACAAACCAACTGCGAGTTCTCCAAGACCATAGGCGA
ACTCTACGAGAGCATTGCCCACTGCAAGCTCCCAAGTGGAAGTCTTAAAA
CCAATGCTAGCACCCTGAGTGCTTGTGATGAGAACGAAGAGCAAAATACG
GATGACAACGAGGAAGAGCGTAATGAAAGGATCTTAGGAGAGGTTCAGGA
ATCCCTGGAGCGACAAATCAGGGAGCTGGAACAAACTGAGATCGATGTGG
ATACGGAAACAGATGAAACGGATTGTGAAGTTCAGCTGGAGGAGCAGGAC
GACGGAGTTGATGGCTTGGAGATGGGCAGCGGCGATGATTCGGCTGTTTT
TGTGACCATGAGCGATGATGAGAACGCCAGCTTGGAGTTAAGATACCAAG
CGCTGCTTTCTGACATGTCTTGGAACGAAAGAGCTGAGGCTTTGGCCACC
TTGCAGGCATATGTTGCCAGACACCCTGGAAGAGCTCAAGAGCTTCATCA
GAAGTTATCATCGCCGTCCAGGCGTCGTTCCCTACAGGAAACTCTGAAAA
AATATCAAGCAAAACAGGCGAGAGCCCAGCAGAAGCGGAATCTGCTTCAG
CAGGAAAAGGCAGCTAAGTTACAGCAGCTATTTTCAAGGGTGGAGGATGT
CAAGGCAGCCAAGAATCAAATTATCGAAGATAAACGTCAGAAAATGCAAG
GACGACTCCAAAGGGCAGCGGAAAATCGAGAACAATATCTAAAGCAAATC
ATTGAGAAAGCACATGACGAGGAGAAGAAACTCAAGGAAATAAATTTCAT
TAAGAACATAGAAGCTCAAAACAAGCGACTCGATCTCCTGGAATCCTCCA
AGGAAACAGAGGGTAGACTGCAAGACCTAGAGCAGGAAAGGCAAAAGAGG
GTGGAGGAAAAATTGGCCAAGGAAGCCGCTGTCGAAAGACGACGACAAGC
CCTAGAAAAAGAACGTTTGCTCAAGCTCGAGAAGATGAATGAAACGCGCC
TGGAGAAGGAGCAGAGAATTGGTAAGATGCAGGAGCAGAAGGAGAAACAG
CGACAGGCTCTGGCGAGAGAAAAGGCCAGGGATCGAGAGGAGAGACTTCT
AGCCCTACAAGTCCAACAACAACAGACGACGGAGGAGCTGCAGCGAAAGA
TTCTCCAAAAACAAATGGAATCCGCTCGACGTCACGAGGAGAACATCGAA
CACATCCGGCAAAGAGCTCTGGAGCTGACTATTCCCACCAGACAGGCGGA
CGAGGGACGTGGCGATCAGGACGTGTCCGAGGACATCTTGAATGGAAACG
CAACAAGCACCACCAATGAGGATTGTGACTTATCCTCTTCTCTTTCCGAG
GTGGGGGGCAACAACGCTCACACGAGGAGCTACAAGAAGAAGATGAAAAA
ACTTAAGCAGAGGATGAATCAGTGCGCTGCCGAGTATTTGGAAAGTTTGG
AGGCCTTGCCCGCACACGCAAGAAGAGATAGTACAGTTCCCAAGCTGCTA
AATCTGGTGGTCAAGGGTGGAGGTGCCCAAGGACTGGATAGAAACCTAGG
CAACCTTTTGCGTGTCATACCCAAAGCTCAGACCTTAGATTTTCTAGCTT
TTCTCTGCATGGATGGCTTGGGCATACTGGCCAACCACGTGATTAGCAAG
GGCATGGATGAAAACTCAGAGATCTCCCGGAAGTCCGTCTATTTGGCCGC
GCAGCTGTACCGGAATGCCTGTTCCGTGTGTCCTCAGATTGCTCGTCACG
CTCTTCTGGGCAATTCCATAACCGTTCTGTTCGATGCCATCAACAAGAGT
TTCCAGTTACCCGAAGAAAAATCACCACAACATCCGGTCGAGTTGTCCAC
GGAGCTAATGCTGGCCTGCACGGAGGCGCTGTCCTCGAGTTACGTGAAAA
AGAACACCCACCCAAAAGTTCCGGAACGCCTGCCGGACATGATAAACTAT
GCTGTGATTACGGGCTTGATCGAAATCCTTTCCCGTCGCATTCAGAAGGT
GCGGGAGTCCATCGAGAGCAACAAGAGTGTGATGCTGAGTCTGCTGACCA
CTTTGGGCTTCCTGTCCCGCTTCATTGATGTTTGCCAGCCGGGTCCTGCC
GATCCGACACGTCTGCTGAGCGCGGCCAAGTCCACTGAGCTCTTTGGAAC
CGTTTCGATGCTCTATGGCTGCGTGATGCCAATGGGTGAATGCATTCCAC
CACGCACGACCGCCCTGGCGGCATCGACTTTTCATCTCTACGTGTCCCTG
GCCTCCTTGGATGTGAACACCTTCCAGGAGACCCTAACTGTGGAGGGTCC
TTTGTCGCTGAAGCTGTTGGACGTGATGACCGTCATCCTGAACTGCAGTT
TAGTGAATGACCAATGGACAACGAACAGCGAGAGCTGCCCAATGCTGATT
GACCTTGTCGCCTCGATGGCCTTTTTCTGCGTTAACAATCGCAGACATCA
GGACCTGCTGATATCTGAGCAGTATGCCGTGATCTTCAAGAGGATGGCCA
AGCTGCCCACCCAGTTTAACCCTGTGATTTATCCCTTCCTGGTCACGGTT
TCCTTCAACAATCCGCCAGCCAGAGAGTTCCTCAGCAAGGACTTCGATTT
GACGTTCCTAGATGAGTACAGCAAATCGGAGATGGCCCAAAGGAATGTGG
TCATTAAACTGATAAACAGCCGCACCAAAGACAAAATCAGCGCCGGTAAT
AAGAAAAATGCGTAGAAGCTTTCTAGACCAT
BS15433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp3-RA | 5199 | CG18397-PA | 1..5199 | 17..5215 | 25995 | 100 | Plus |
| ssp3-RB | 5193 | CG18397-PB | 1..5193 | 17..5215 | 25870 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp3-RA | 6146 | CG18397-RA | 495..5694 | 17..5216 | 26000 | 100 | Plus |
| ssp3-RB | 6318 | CG18397-RB | 495..5688 | 17..5216 | 25875 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18940688..18942958 | 2477..207 | 11355 | 100 | Minus |
| 2L | 23513712 | 2L | 18939181..18940627 | 3924..2478 | 7235 | 100 | Minus |
| 2L | 23513712 | 2L | 18917190..18917519 | 5104..4775 | 1650 | 100 | Minus |
| 2L | 23513712 | 2L | 18938752..18939012 | 4184..3924 | 1305 | 100 | Minus |
| 2L | 23513712 | 2L | 18943276..18943466 | 207..17 | 955 | 100 | Minus |
| 2L | 23513712 | 2L | 18920469..18920616 | 4594..4447 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 18936425..18936567 | 4446..4304 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 18938562..18938685 | 4306..4183 | 620 | 100 | Minus |
| 2L | 23513712 | 2L | 18916977..18917089 | 5216..5104 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 18920275..18920372 | 4689..4592 | 490 | 100 | Minus |
| 2L | 23513712 | 2L | 18919924..18920017 | 4778..4685 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:29:05 has no hits.
BS15433.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:34 Download gff for
BS15433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp3-RA | 483..5681 | 17..5215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:20 Download gff for
BS15433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp3-RA | 495..5693 | 17..5215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:29 Download gff for
BS15433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp3-RA | 483..5681 | 17..5215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:29 Download gff for
BS15433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp3-RA | 495..5693 | 17..5215 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:29 Download gff for
BS15433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18916978..18917088 | 5105..5215 | 100 | <- | Minus |
| 2L | 18917190..18917516 | 4778..5104 | 100 | <- | Minus |
| 2L | 18919925..18920016 | 4686..4777 | 100 | <- | Minus |
| 2L | 18920279..18920371 | 4593..4685 | 100 | <- | Minus |
| 2L | 18920471..18920616 | 4447..4592 | 100 | <- | Minus |
| 2L | 18936425..18936564 | 4307..4446 | 100 | <- | Minus |
| 2L | 18938562..18938685 | 4183..4306 | 100 | <- | Minus |
| 2L | 18938754..18939011 | 3925..4182 | 100 | <- | Minus |
| 2L | 18939181..18940627 | 2478..3924 | 100 | <- | Minus |
| 2L | 18940688..18942958 | 207..2477 | 100 | <- | Minus |
| 2L | 18943277..18943466 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:20 Download gff for
BS15433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18916978..18917088 | 5105..5215 | 100 | <- | Minus |
| arm_2L | 18917190..18917516 | 4778..5104 | 100 | <- | Minus |
| arm_2L | 18919925..18920016 | 4686..4777 | 100 | <- | Minus |
| arm_2L | 18920279..18920371 | 4593..4685 | 100 | <- | Minus |
| arm_2L | 18920471..18920616 | 4447..4592 | 100 | <- | Minus |
| arm_2L | 18936425..18936564 | 4307..4446 | 100 | <- | Minus |
| arm_2L | 18938562..18938685 | 4183..4306 | 100 | <- | Minus |
| arm_2L | 18938754..18939011 | 3925..4182 | 100 | <- | Minus |
| arm_2L | 18939181..18940627 | 2478..3924 | 100 | <- | Minus |
| arm_2L | 18940688..18942958 | 207..2477 | 100 | <- | Minus |
| arm_2L | 18943277..18943466 | 17..206 | 100 | | Minus |
BS15433.pep Sequence
Translation from 16 to 5214
> BS15433.pep
MEMREVLSREGREAKNLLVYQFCDETTSSGATSGFGSTGGDVGGGSGGDG
PAVGSGGVLLNGDCYRKPPMVPPKSPNGTPKNCQSPTSPRLKSSASVGCG
GGSSGGPRVRSASTGRDKKSELQARYWALLFGNLQRAINEIYQTVECYEN
ISSCQETILVLENYVRDFKALCEWFKVSWDYESRPLQQRPQSLAWEVRKS
NPTPRVRTRSLCSPNNSGKSSPALFPGTQSGETSPFCDNGQISPRKLLRA
YDQVPKGAMRLNVRELFAASKRATQGSSQSDNMEGPLDLSGDKSNFVLRS
TQYAQTDLEDPHLTLADVREKMRMEAEEREAQNRIENEALEEVTIPIDNE
DATESLNKQEPSSLELPIHNVADLSKEPELMEAASEATALEMTVASLESM
ENALLNQQANKEPTPPSTVIKPLAEILKKPQPLNPLSGNNVQNSPLKYSS
VLNRPSKKMIPPPGGVAAQKTISTKPGLVKPNLTTTVNGLRSTKTATAPP
AIKTTGRSGLQRHPRPSSKTECYGPPNNVASRLSARSRTMLEINGRNTNS
SARTLPKKTNPGSILSTATRTKMSSRLSSREDITSSTSTLKASNEQLSNS
RNTLKAENQHSEPKQIQPPTDADDGWLTVKNRRRTSMHWANRFNQPTGYA
SLPTLALLNEQQKEQEHKEKQKGEDDGKVIVKTISAKTKAPIEVAKAKAK
TSIVITRPEIKNAKAKVNSFPVQKSNTNQVKKPEKQEKSDTTAPAAIASS
SNTRNSSHSICVGRNSIIKRQKSDLTGLKMTSLHKEYMRSEKNALRKLQQ
KEQGNQQHNSSSSSAETVVESCNEDHSKIDIKIQTNCEFSKTIGELYESI
AHCKLPSGSLKTNASTLSACDENEEQNTDDNEEERNERILGEVQESLERQ
IRELEQTEIDVDTETDETDCEVQLEEQDDGVDGLEMGSGDDSAVFVTMSD
DENASLELRYQALLSDMSWNERAEALATLQAYVARHPGRAQELHQKLSSP
SRRRSLQETLKKYQAKQARAQQKRNLLQQEKAAKLQQLFSRVEDVKAAKN
QIIEDKRQKMQGRLQRAAENREQYLKQIIEKAHDEEKKLKEINFIKNIEA
QNKRLDLLESSKETEGRLQDLEQERQKRVEEKLAKEAAVERRRQALEKER
LLKLEKMNETRLEKEQRIGKMQEQKEKQRQALAREKARDREERLLALQVQ
QQQTTEELQRKILQKQMESARRHEENIEHIRQRALELTIPTRQADEGRGD
QDVSEDILNGNATSTTNEDCDLSSSLSEVGGNNAHTRSYKKKMKKLKQRM
NQCAAEYLESLEALPAHARRDSTVPKLLNLVVKGGGAQGLDRNLGNLLRV
IPKAQTLDFLAFLCMDGLGILANHVISKGMDENSEISRKSVYLAAQLYRN
ACSVCPQIARHALLGNSITVLFDAINKSFQLPEEKSPQHPVELSTELMLA
CTEALSSSYVKKNTHPKVPERLPDMINYAVITGLIEILSRRIQKVRESIE
SNKSVMLSLLTTLGFLSRFIDVCQPGPADPTRLLSAAKSTELFGTVSMLY
GCVMPMGECIPPRTTALAASTFHLYVSLASLDVNTFQETLTVEGPLSLKL
LDVMTVILNCSLVNDQWTTNSESCPMLIDLVASMAFFCVNNRRHQDLLIS
EQYAVIFKRMAKLPTQFNPVIYPFLVTVSFNNPPAREFLSKDFDLTFLDE
YSKSEMAQRNVVIKLINSRTKDKISAGNKKNA*
BS15433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp3-PA | 1732 | CG18397-PA | 1..1732 | 1..1732 | 8789 | 100 | Plus |
| ssp3-PB | 1730 | CG18397-PB | 1..1730 | 1..1732 | 8761 | 99.9 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1147..1654 | 783..1313 | 251 | 23.6 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1147..1654 | 783..1313 | 251 | 23.6 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3816..4877 | 271..1306 | 238 | 17.9 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1112..1653 | 688..1228 | 222 | 21.3 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1112..1653 | 688..1228 | 222 | 21.3 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1189..1663 | 664..1199 | 200 | 21.8 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1189..1663 | 664..1199 | 200 | 21.8 | Plus |
