Clone Sequence Records
BS15434.complete Sequence
2021 bp assembled on 2009-12-07
GenBank Submission: KX802539
> BS15434.complete
GAAGTTATCAGTCGACATGTTAATTAACCGGAGCAAAACAAGAGTGAGCC
CAACGTCTGAGCGAATCCTCGAGAAAACCGAAGCCGAGATGAAGTTCCGT
GGCAATGGAAAGCTTTTGTGGAATTTGACCAAGAACTCCTTGGCCCAGCA
GTCTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCTAGCAGCTACAGCA
CCGTCCAGAAGACCATTCCCTTGGAGCAGCCGAATCTGCTGAAGTACCAC
GTCCTGCCGCTGGAGGAAACGCTGAACCGCTTCATGACCACTGTGGAACC
TCTCCTGACGCCTGAGGAGTTTCAACGGCAAAAGGGAATCACCTCCGAGT
TTTTAAAAAAGCAGGGACGCGAACTGCAGCTGCTCCTGGAAGAAACCGGC
AGCAAGGAGAAGAATTGGCTGGCCCACCGCTGGCTGAAGGCTGCCTATTT
GACCTATCGAGATCCAGTCACCGTGTTCGTGAGTCCTGGCATGACCTTTC
CCAAGCAAAACTTCAGGGACTCACGTGCTTTCGTGGACTATACCGCCAGG
GTTATCTATGGACTGGGAGAATTCAACGACATGGTGCACGCCAACAAAAT
TCCGATCGTTAAAATGGGCAAGAACGAGCTGGACAACAGCCAGTTTGGCA
AGGTATTCGGCACATGTCGGATTCCCAGAAGGGGCACCGACGAGATCGTG
TACAATCCCGACTCCGATTATGTGGTGGTGATCTACAAGAATCACTTCTA
CCAACTGAAGATATACAGTAAGGAGGGAAAGCTCATTGCTGCACCATGTC
TAGCTGCTCAACTCGAGAATATCGTCTTGAAGGAAACGCAAGTGGGAGTT
CCTTATGGTATTCTGACCACCGACTCCAGGGACAATTGGGCGGAGGCCTA
CGAATATCTGGTTGAGACTCCTGGCAACCGGGATGCCCTCAAGACCATTC
AGGGTGCTCTGTTCACCGTCTCACTCGATGAGGGTACTATCCTAAAGGAA
GGCGAAGAGACCGACGAACTTATCCTATCGCTGATCCATGGCAGTGGCAG
CAAGATAAACAGCGGCAACCGTTGGATGGACAAGACTATTCAGCTGGTGG
TAAACCCCAATGGAAACGTCGGATTCACTTATGAGCACTCGCCGGCTGAG
GGCCAGCCCATTGCGATGATGATGGACTACGTGGTGCAAAAGATGAAGGA
AGACCCTAGCTTCGGGCAATCTGGCTCACAGGACTTTGCTCCTGCACAGA
AAATACAGTTCTCTTCGAGCAATAAAAGTCTAGAGAAATCTTTGAACGTC
GCCCAGGAAAACGTGGATAAACTTGCCGATGCTCTCCAAATGAAGGTTCT
GAAATTCAACGGCTTTGGAAAGGATTTCATAAAGAAACAGCGTCTGGGTC
CGGACAGCTTTGTTCAGATGGCGCTGCAGCTCGCCTTCTACAAAATGCAC
TCGGAACCACCTGCGCAATATGAGTCGGCGCACTTGCGCATATTCGACGG
CGGACGAACCGAAACTATACGCTCTTGCTCCAACGAATCCCTGGCCTTTT
CCCGCGCTATGCAGGACCCAAACGTTACCGATCAGGAACGCGCCGCCAAG
CTTCGTGAGGCAGTAGTGTCTCATCAGACGTATGCTAAGCTGGCTCTTCA
GGGAAAGGGTGTGGATCGTCACCTGCTTGGACTGAAGCTGATGGCTCTGG
AGCACAGCAAGCCAATTCCCGAGTTCTTCAAGTCGCCGGGCTTTGTTAAG
TCCAGTCACTTCCGCATGTCCACCTCACAGGTAGCCACTAAATACGATGC
TTTCATGGGATACGGCCCGGCGACTGACGATGGTTATGCATGCTGCTATA
ATCCTCGGGATAATGACATCATATTGGCCATATCCGCTTGGCGCCATTGC
CCAATAACGGATCACTTGAAGTTCGTTAAGACCCTCGAGCAATCCTTTTT
CGAAATGAAGAATGTTCTCGAGAAGAACCCGCCTGAGACTAAGTCGAAGT
TGTAAAAGCTTTCTAGACCAT
BS15434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-RD | 1989 | CG1041-PD | 1..1989 | 17..2005 | 9945 | 100 | Plus |
| CG1041-RA | 1989 | CG1041-PA | 1..1989 | 17..2005 | 9945 | 100 | Plus |
| CG1041-RB | 1974 | CG1041-PB | 16..1974 | 47..2005 | 9795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-RD | 2267 | CG1041-RD | 68..2058 | 17..2007 | 9955 | 100 | Plus |
| CG1041-RA | 2380 | CG1041-RA | 181..2171 | 17..2007 | 9955 | 100 | Plus |
| CG1041-RB | 2283 | CG1041-RB | 114..2074 | 47..2007 | 9805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6372169..6373237 | 1195..127 | 5345 | 100 | Minus |
| 3R | 32079331 | 3R | 6371235..6371798 | 2007..1444 | 2820 | 100 | Minus |
| 3R | 32079331 | 3R | 17139397..17140980 | 382..1965 | 2265 | 76.2 | Plus |
| 3R | 32079331 | 3R | 6371858..6372106 | 1443..1195 | 1245 | 100 | Minus |
| 3R | 32079331 | 3R | 6373302..6373382 | 127..47 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:40:42 has no hits.
BS15434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:56 Download gff for
BS15434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 1..1989 | 17..2005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:28 Download gff for
BS15434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 186..2167 | 22..2003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:34 Download gff for
BS15434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 186..2167 | 22..2003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:30 Download gff for
BS15434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 186..2167 | 22..2003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:22 Download gff for
BS15434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 186..2167 | 22..2003 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:22 Download gff for
BS15434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6371858..6372106 | 1195..1443 | 100 | <- | Minus |
| 3R | 6371239..6371798 | 1444..2003 | 100 | <- | Minus |
| 3R | 6372170..6373236 | 128..1194 | 100 | <- | Minus |
| 3R | 6373302..6373380 | 49..127 | 100 | <- | Minus |
| 3R | 6373814..6373840 | 22..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:34 Download gff for
BS15434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2197580..2197828 | 1195..1443 | 100 | <- | Minus |
| arm_3R | 2196961..2197520 | 1444..2003 | 100 | <- | Minus |
| arm_3R | 2197892..2198958 | 128..1194 | 100 | <- | Minus |
| arm_3R | 2199024..2199102 | 49..127 | 100 | <- | Minus |
| arm_3R | 2199536..2199562 | 22..48 | 100 | | Minus |
BS15434.3prime Sequence
933 bp (756 high quality bases) assembled on 2006-12-21
> BS15434.3prime
ATGGTCTAGAAAGCTTTTACCTTTTCGACTTAGTCTCAGGCGGGTTCTTC
TCGAGAACATTCTTCATTTCGAAAAAGGATTGCTCGAGGGTCTTAACGAA
CTTCAAGTGATCCGTTATTGGGCAATGGCGCCAAGCGGATATGGCCAATA
TGATGTCATTATCCCGAGGATTATAGCAGCATGCATAACCATCGTCAGTC
GCCGGGCCGTATCCCATGAAAGCATCGTATTTAGTGGCTACCTGTGAGGT
GGACATGCGGAAGTGACTGGACTTAACAAAGCCCGGCGACTTGAAGAACT
CGGGAATTGGCTTGCTGTGCTCCAGAGCCATCAGCTTCAGTCCAAGCAGG
TGACGATCCACACCCTTTCCCTGAAGAGCCAGCTTAGCATACGTCTGATG
AGACACTACTGCCTCACGAAGCTTGGCGGCGCGTTCCTGATCGGTAACGT
TTGGGTCCTGCATAGCGCGGGAAAAGGCCAGGGATTCGTTGGAGCAAGAG
CGTATAGTTTCGGTTCGTCCGCCGTCGAATATGCGCAAGTGCGCCGACTC
ATATTGCGCAGGTGGTTCCGAGTGCATTTTGTAGAAGGCGAGCTGCAGCG
CCATCTGAACAAAGCTGTCCGGACCCAGACGCTGTTTCTTTATGAAATCC
TTTCCAAAGCCGTTGAATTTCAGAACCTTCATTTGGAGAGCATCGGCAAG
TTTATCCACGTTTTCCTGGGCGACGTTCAAAGATTTCTCTAGACTTTTAT
TGCTCGAAGAGAACTGTATTTTCTGTGCAGGAGCAAAGTCCTGTGAGCCA
GATTGCCCGAAGCTAGGGTCTTCCTTCATCTTTTGCACCACGTAGTCCAT
CATCATCGCAATGGGCTGCCCCTCAGCCGGCGAGTGCTCATAAGTGAATC
CGACGTTTCCCTTTGGGGTTTACACCAGCTGAA
BS15434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-PA | 1989 | CG1041-RA | 1096..1982 | 910..24 | 4410 | 99.8 | Minus |
| CG1041-PB | 1974 | CG1041-RB | 1081..1967 | 910..24 | 4410 | 99.8 | Minus |
| CG5265-PA | 1932 | CG5265-RA | 1375..1454 | 556..477 | 150 | 87.5 | Minus |
| CG5265-PA | 1932 | CG5265-RA | 1279..1331 | 652..600 | 140 | 90.5 | Minus |
| CG5265-PA | 1932 | CG5265-RA | 1531..1583 | 400..348 | 140 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-RD | 2267 | CG1041-RD | 1140..2049 | 933..24 | 4475 | 99.6 | Minus |
| CG1041-RE | 2330 | CG1041-RE | 1203..2112 | 933..24 | 4475 | 99.6 | Minus |
| CG1041-RB | 2283 | CG1041-RB | 1156..2065 | 933..24 | 4475 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6371244..6371798 | 24..578 | 2775 | 100 | Plus |
| 3R | 32079331 | 3R | 6371858..6372106 | 579..827 | 1245 | 100 | Plus |
| 3R | 32079331 | 3R | 17140110..17140980 | 927..57 | 1220 | 76 | Minus |
| 3R | 32079331 | 3R | 6372169..6372275 | 827..933 | 445 | 94.4 | Plus |
Blast to na_te.dros performed on 2015-01-30 12:24:04 has no hits.
BS15434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:51 Download gff for
BS15434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-PA | 1075..1989 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:41 Download gff for
BS15434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-PB | 1060..1974 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:35:54 Download gff for
BS15434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 1253..2171 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:00:36 Download gff for
BS15434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RB | 1156..2074 | 15..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:00:36 Download gff for
BS15434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6371235..6371798 | 15..578 | 99 | <- | Plus |
| 3R | 6371858..6372106 | 579..827 | 100 | <- | Plus |
| 3R | 6372170..6372275 | 828..933 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:35:54 Download gff for
BS15434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2196957..2197520 | 15..578 | 99 | <- | Plus |
| arm_3R | 2197580..2197828 | 579..827 | 100 | <- | Plus |
| arm_3R | 2197892..2197997 | 828..933 | 96 | | Plus |
BS15434.5prime Sequence
853 bp (805 high quality bases) assembled on 2006-12-21
> BS15434.5prime
GAAGTTATCCCTCGACATGTTAATTAACCGGAGCAAAACAAGAGTGAGCC
CAACGTCTGAGCGAATCCTCGAGAAAACCGAAGCCGAGATGAAGTTCCGT
GGCAATGGAAAGCTTTTGTGGAATTTGACCAAGAACTCCTTGGCCCAGCA
GTCTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCTAGCAGCTACAGCA
CCGTCCAGAAGACCATTCCCTTGGAGCAGCCGAATCTGCTGAAGTACCAC
GTCCTGCCGCTGGAGGAAACGCTGAACCGCTTCATGACCACTGTGGAACC
TCTCCTGACGCCTGAGGAGTTTCAACGGCAAAAGGGAATCACCTCCGAGT
TTTTAAAAAAGCAGGGACGCGAACTGCAGCTGCTCCTGGAAGAAACCGGC
AGCAAGGAGAAGAATTGGCTGGCCCACCGCTGGCTGAAGGCTGCCTATTT
GACCTATCGAGATCCAGTCACCGTGTTCGTGAGTCCTGGCATGACCTTTC
CCAAGCAAAACTTCAGGGACTCACGTGCTTTCGTGGACTATACCGCCAGG
GTTATCTATGGACTGGGAGAATTCAACGACATGGTGCACGCCAACAAAAT
TCCGATCGTTAAAATGGGCAAGAACGAGCTGGACAACAGCCAGTTTGGCA
AGGTATTCGGCACATGTCGGATTCCCAGAAGGGGCACCGACGAGATCGTG
TACAATCCCGACTCCGATTATGTGGTGGTGATCTACAAGAATCACTTCTA
CCAACTGAAGATATACAGTAAGGAGGGAAAGCTCATTGCTGCACCATGTC
TAGCTGCTCAACTCGAGAATATCGTCTTGAAGGAAACGCAAGTGGGAGTT
CCT
BS15434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-PA | 1989 | CG1041-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG1041-PB | 1974 | CG1041-RB | 16..822 | 47..853 | 4035 | 100 | Plus |
| CG5265-PA | 1932 | CG5265-RA | 491..581 | 582..672 | 255 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-RD | 2267 | CG1041-RD | 68..904 | 17..853 | 4185 | 100 | Plus |
| CG1041-RA | 2380 | CG1041-RA | 181..1017 | 17..853 | 4185 | 100 | Plus |
| CG1041-RB | 2283 | CG1041-RB | 114..920 | 47..853 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6372511..6373237 | 853..127 | 3635 | 100 | Minus |
| 3R | 32079331 | 3R | 17139397..17139832 | 382..817 | 725 | 77.8 | Plus |
| 3R | 32079331 | 3R | 6373302..6373382 | 127..47 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:48:25 has no hits.
BS15434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:52 Download gff for
BS15434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:42 Download gff for
BS15434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:53:36 Download gff for
BS15434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 175..1017 | 11..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:10:32 Download gff for
BS15434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 175..1017 | 11..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:10:32 Download gff for
BS15434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6372511..6373236 | 128..853 | 100 | <- | Minus |
| 3R | 6373302..6373380 | 49..127 | 100 | <- | Minus |
| 3R | 6373814..6373851 | 11..48 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:53:36 Download gff for
BS15434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2198233..2198958 | 128..853 | 100 | <- | Minus |
| arm_3R | 2199024..2199102 | 49..127 | 100 | <- | Minus |
| arm_3R | 2199536..2199573 | 11..48 | 92 | | Minus |
BS15434.pep Sequence
Translation from 16 to 2004
> BS15434.pep
MLINRSKTRVSPTSERILEKTEAEMKFRGNGKLLWNLTKNSLAQQSPNGI
AKKVLPASSYSTVQKTIPLEQPNLLKYHVLPLEETLNRFMTTVEPLLTPE
EFQRQKGITSEFLKKQGRELQLLLEETGSKEKNWLAHRWLKAAYLTYRDP
VTVFVSPGMTFPKQNFRDSRAFVDYTARVIYGLGEFNDMVHANKIPIVKM
GKNELDNSQFGKVFGTCRIPRRGTDEIVYNPDSDYVVVIYKNHFYQLKIY
SKEGKLIAAPCLAAQLENIVLKETQVGVPYGILTTDSRDNWAEAYEYLVE
TPGNRDALKTIQGALFTVSLDEGTILKEGEETDELILSLIHGSGSKINSG
NRWMDKTIQLVVNPNGNVGFTYEHSPAEGQPIAMMMDYVVQKMKEDPSFG
QSGSQDFAPAQKIQFSSSNKSLEKSLNVAQENVDKLADALQMKVLKFNGF
GKDFIKKQRLGPDSFVQMALQLAFYKMHSEPPAQYESAHLRIFDGGRTET
IRSCSNESLAFSRAMQDPNVTDQERAAKLREAVVSHQTYAKLALQGKGVD
RHLLGLKLMALEHSKPIPEFFKSPGFVKSSHFRMSTSQVATKYDAFMGYG
PATDDGYACCYNPRDNDIILAISAWRHCPITDHLKFVKTLEQSFFEMKNV
LEKNPPETKSKL*
BS15434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-PD | 662 | CG1041-PD | 1..662 | 1..662 | 3439 | 100 | Plus |
| CG1041-PA | 662 | CG1041-PA | 1..662 | 1..662 | 3439 | 100 | Plus |
| CG1041-PB | 657 | CG1041-PB | 6..657 | 11..662 | 3392 | 100 | Plus |
| CG1041-PE | 638 | CG1041-PE | 1..638 | 25..662 | 3325 | 100 | Plus |
| CG5265-PA | 643 | CG5265-PA | 1..642 | 25..661 | 2483 | 73.9 | Plus |
