Clone Sequence Records
BS15436.3prime Sequence
459 bp (459 high quality bases) assembled on 2006-12-21
> BS15436.3prime
ATGGTCTAGAAAGCTTTTACTTGTTAACAGTTTGCTTATTCAGATAAGCC
ATTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCA
GCCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCT
CGGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAG
GCGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCAT
CTTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCT
GAGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGA
GAGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCT
CATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATGTCGA
CTGATAACT
BS15436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 747 | CG7945-RB | 319..739 | 445..25 | 2105 | 100 | Minus |
CG7945-PA | 789 | CG7945-RA | 361..781 | 445..25 | 2105 | 100 | Minus |
CG7945-PC | 429 | CG7945-RC | 1..421 | 445..25 | 2105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 915..1335 | 445..25 | 2105 | 100 | Minus |
CG7945-RB | 1275 | CG7945-RB | 739..1159 | 445..25 | 2105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521827..15522197 | 25..395 | 1855 | 100 | Plus |
3L | 28110227 | 3L | 15522360..15522411 | 394..445 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 03:12:49 has no hits.
BS15436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:55 Download gff for
BS15436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PB | 319..747 | 17..445 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:47 Download gff for
BS15436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PC | 1..429 | 17..445 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:12 Download gff for
BS15436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1167 | 17..445 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:08:50 Download gff for
BS15436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1167 | 17..445 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:08:50 Download gff for
BS15436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521819..15522195 | 17..393 | 99 | <- | Plus |
3L | 15522360..15522411 | 394..445 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:12 Download gff for
BS15436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514919..15515295 | 17..393 | 99 | <- | Plus |
arm_3L | 15515460..15515511 | 394..445 | 100 | | Plus |
BS15436.5prime Sequence
459 bp (459 high quality bases) assembled on 2006-12-21
> BS15436.5prime
GAAGTTATCCTTCGACATGTCCATGGATCTGATCAAGAGCAACGAAATGA
TGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAA
CGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCG
GGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACA
GCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTT
TACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGA
CACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCG
TTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTC
CAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATTAAAAGCT
TTCTAGACC
BS15436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 747 | CG7945-RB | 319..747 | 17..445 | 2145 | 100 | Plus |
CG7945-PA | 789 | CG7945-RA | 361..789 | 17..445 | 2145 | 100 | Plus |
CG7945-PC | 429 | CG7945-RC | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 915..1343 | 17..445 | 2145 | 100 | Plus |
CG7945-RB | 1275 | CG7945-RB | 739..1167 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521819..15522197 | 445..67 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522411 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 12:30:10 has no hits.
BS15436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:56 Download gff for
BS15436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PB | 310..747 | 6..445 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:49 Download gff for
BS15436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PC | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:37:38 Download gff for
BS15436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 730..1169 | 6..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:02:02 Download gff for
BS15436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 730..1169 | 6..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:02:02 Download gff for
BS15436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521812..15522195 | 69..451 | 98 | <- | Minus |
3L | 15522360..15522420 | 6..68 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:37:38 Download gff for
BS15436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514912..15515295 | 69..451 | 98 | <- | Minus |
arm_3L | 15515460..15515520 | 6..68 | 93 | | Minus |
BS15436.complete Sequence
461 bp assembled on 2006-11-29
GenBank Submission: FJ637935
> BS15436.complete
GAAGTTATCAGTCGACATGTCCATGGATCTGATCAAGAGCAACGAAATGA
TGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAA
CGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCG
GGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACA
GCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTT
TACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGA
CACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCG
TTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTC
CAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATTAAAAGCT
TTCTAGACCAT
BS15436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 789 | CG7945-PA | 361..789 | 17..445 | 2145 | 100 | Plus |
CG7945-RB | 747 | CG7945-PB | 319..747 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RA | 1451 | CG7945-RA | 915..1343 | 17..445 | 2145 | 100 | Plus |
CG7945-RB | 1275 | CG7945-RB | 739..1167 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521819..15522197 | 445..67 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522411 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:46:13 has no hits.
BS15436.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:28 Download gff for
BS15436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RA | 361..789 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:56 Download gff for
BS15436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RC | 1691..2121 | 17..451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:28 Download gff for
BS15436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1165 | 17..443 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:28 Download gff for
BS15436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RC | 1691..2121 | 17..451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:49 Download gff for
BS15436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 739..1165 | 17..443 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:49 Download gff for
BS15436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521821..15522195 | 69..443 | 100 | <- | Minus |
3L | 15522360..15522411 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:28 Download gff for
BS15436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15514921..15515295 | 69..443 | 100 | <- | Minus |
arm_3L | 15515460..15515511 | 17..68 | 100 | | Minus |
BS15436.pep Sequence
Translation from 16 to 444
> BS15436.pep
MSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTVRDNSQE
DSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHMDTVPEA
DVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*
BS15436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 248 | CG7945-PB | 107..248 | 1..142 | 717 | 100 | Plus |
CG7945-PA | 262 | CG7945-PA | 121..262 | 1..142 | 717 | 100 | Plus |