Clone BS15436 Report

Search the DGRC for BS15436

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG7945-RC
Protein status:BS15436.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15436.3prime Sequence

459 bp (459 high quality bases) assembled on 2006-12-21

> BS15436.3prime
ATGGTCTAGAAAGCTTTTACTTGTTAACAGTTTGCTTATTCAGATAAGCC
ATTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCA
GCCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCT
CGGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAG
GCGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCAT
CTTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCT
GAGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGA
GAGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCT
CATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATGTCGA
CTGATAACT

BS15436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 747 CG7945-RB 319..739 445..25 2105 100 Minus
CG7945-PA 789 CG7945-RA 361..781 445..25 2105 100 Minus
CG7945-PC 429 CG7945-RC 1..421 445..25 2105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 915..1335 445..25 2105 100 Minus
CG7945-RB 1275 CG7945-RB 739..1159 445..25 2105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521827..15522197 25..395 1855 100 Plus
3L 28110227 3L 15522360..15522411 394..445 260 100 Plus
Blast to na_te.dros performed on 2015-01-30 03:12:49 has no hits.

BS15436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:55 Download gff for BS15436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PB 319..747 17..445 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:47 Download gff for BS15436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PC 1..429 17..445 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:12 Download gff for BS15436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1167 17..445 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:08:50 Download gff for BS15436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1167 17..445 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:08:50 Download gff for BS15436.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521819..15522195 17..393 99 <- Plus
3L 15522360..15522411 394..445 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:12 Download gff for BS15436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514919..15515295 17..393 99 <- Plus
arm_3L 15515460..15515511 394..445 100   Plus

BS15436.5prime Sequence

459 bp (459 high quality bases) assembled on 2006-12-21

> BS15436.5prime
GAAGTTATCCTTCGACATGTCCATGGATCTGATCAAGAGCAACGAAATGA
TGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAA
CGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCG
GGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACA
GCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTT
TACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGA
CACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCG
TTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTC
CAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATTAAAAGCT
TTCTAGACC

BS15436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 747 CG7945-RB 319..747 17..445 2145 100 Plus
CG7945-PA 789 CG7945-RA 361..789 17..445 2145 100 Plus
CG7945-PC 429 CG7945-RC 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 915..1343 17..445 2145 100 Plus
CG7945-RB 1275 CG7945-RB 739..1167 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521819..15522197 445..67 1895 100 Minus
3L 28110227 3L 15522360..15522411 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-01-30 12:30:10 has no hits.

BS15436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:26:56 Download gff for BS15436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PB 310..747 6..445 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:49 Download gff for BS15436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PC 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:37:38 Download gff for BS15436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 730..1169 6..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:02:02 Download gff for BS15436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 730..1169 6..451 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:02:02 Download gff for BS15436.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521812..15522195 69..451 98 <- Minus
3L 15522360..15522420 6..68 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:37:38 Download gff for BS15436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514912..15515295 69..451 98 <- Minus
arm_3L 15515460..15515520 6..68 93   Minus

BS15436.complete Sequence

461 bp assembled on 2006-11-29

GenBank Submission: FJ637935

> BS15436.complete
GAAGTTATCAGTCGACATGTCCATGGATCTGATCAAGAGCAACGAAATGA
TGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTACAA
CGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTTCG
GGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGACA
GCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGTTT
TACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATGGA
CACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAGCG
TTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGCTC
CAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATTAAAAGCT
TTCTAGACCAT

BS15436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 789 CG7945-PA 361..789 17..445 2145 100 Plus
CG7945-RB 747 CG7945-PB 319..747 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 915..1343 17..445 2145 100 Plus
CG7945-RB 1275 CG7945-RB 739..1167 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521819..15522197 445..67 1895 100 Minus
3L 28110227 3L 15522360..15522411 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:46:13 has no hits.

BS15436.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:28 Download gff for BS15436.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 361..789 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:56 Download gff for BS15436.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RC 1691..2121 17..451 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:28 Download gff for BS15436.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1165 17..443 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:28 Download gff for BS15436.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RC 1691..2121 17..451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:49 Download gff for BS15436.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 739..1165 17..443 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:49 Download gff for BS15436.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15521821..15522195 69..443 100 <- Minus
3L 15522360..15522411 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:28 Download gff for BS15436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514921..15515295 69..443 100 <- Minus
arm_3L 15515460..15515511 17..68 100   Minus

BS15436.pep Sequence

Translation from 16 to 444

> BS15436.pep
MSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTVRDNSQE
DSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHMDTVPEA
DVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSH*

BS15436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 248 CG7945-PB 107..248 1..142 717 100 Plus
CG7945-PA 262 CG7945-PA 121..262 1..142 717 100 Plus