Clone Sequence Records
BS15441.3prime Sequence
758 bp (671 high quality bases) assembled on 2006-12-21
> BS15441.3prime
ATGGNCTAGAAAGCTTTTACTTGCGGAGATCCTGGCGCAGCATTTCGTAC
ACGAACTGATCGCGTAAATCGTTGTCGTAGAACAACGATGGCGGCATTTT
GTCAAAGCTGATGGGTGACCATTGTTGTCCCAGTAAGGTGCTTATCTCTT
CATTGTAGGCGTTCAGCAAAGGAGCGCCTGACCAATCGATCATGGAGACT
TCCAGACGCTTTAGCTGCCGACCCCGAAGACGGGCAATGCCCACGAGGTT
ATGCGGATCCATCAAGTACCCGTGCACTACGATCTCCTCCAGCTGTTTGC
AGCGCCAGGCCATCATTACGAATGGATCCTGGAGTAAAGAGACACGGCGA
CTGGAGTTCATGCGATTGGAATATTTGTACGGCGCGTCCACATAGTGAAT
GCTGCGCAGAGTTTCCCTGTAATGCAACGACATCCAGTCCAAGGCTTCGG
CGTTCATCTTTTCGCAGAATAGCAGTCGCACATGGGTTACAGGCATATTG
CTACGCAGCACACGATGCTGCAGTAGTGCGATGGCCTCATAGGCATACAC
AAGGGTCAGCACCAACTCAATGCTCGAAAAGTGATCCGAAAAGTTGGACC
AGGCCGTCTCCGACACATCGGGATGCTCTTCGCTATCCAGGCCGTGCACT
GCGATCAAAAGTTTCCGCAGCGGAAGCACCTGGATAGTGTGCAGCAGTTC
GTCAGAAAGTGTGTCGTAGTCGAGGGAGAGCACCTGCAGGGCGGCGCATT
TCTGCAGC
BS15441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4911-PA | 1353 | CG4911-RA | 612..1353 | 758..17 | 3685 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4911-RC | 4775 | CG4911-RC | 713..1454 | 758..17 | 3695 | 99.9 | Minus |
CG4911-RA | 2321 | CG4911-RA | 713..1454 | 758..17 | 3695 | 99.9 | Minus |
CG4911-RB | 2318 | CG4911-RB | 713..1451 | 758..17 | 3640 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9070704..9071314 | 148..758 | 3055 | 100 | Plus |
3L | 28110227 | 3L | 9070516..9070647 | 17..148 | 645 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-01-30 03:18:55 has no hits.
BS15441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:02 Download gff for
BS15441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-PA | 612..1353 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:58 Download gff for
BS15441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-PA | 612..1353 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:35 Download gff for
BS15441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-RA | 713..1454 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:09:50 Download gff for
BS15441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-RA | 713..1454 | 17..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:09:50 Download gff for
BS15441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9070516..9070647 | 17..148 | 99 | <- | Plus |
3L | 9070705..9071314 | 149..758 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:35 Download gff for
BS15441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9063616..9063747 | 17..148 | 99 | <- | Plus |
arm_3L | 9063805..9064414 | 149..758 | 100 | | Plus |
BS15441.5prime Sequence
785 bp (755 high quality bases) assembled on 2006-12-21
> BS15441.5prime
GAAGTTATCCCTTTACATGAATTTTAGCCAACGCCAACCAGAATGGCACA
GAATACCATCGGTGGCACTAAATCACATATTCGACTATCTAAATCCCCAG
GATCGTCGGTCGGCAGCGGGTGTATGTTTTTCTTGGAGACATGCCTTATT
TCAAAAACGCTATTTTAGAAACTTTCGCTTTCAATTGGATGTGGGATGCG
ATGATCAGTTGGCCTTCTTCCATCGCTCCATGGCCAACTTGGCCATGGAA
CTGATAGTAGTCTTCGACTTTCAAAATGCAGTTCACATCCAGAAAATGCG
AGGACTTCTATACAAAGTGGCGCACTGTGATAACATCCAGAAATTGCGTT
TCCAAACCCACAATGTCGGCCTTGTTGCCATCGGAAACATGCATAGCGAG
CACTTGTTGGCCATCGAACAATGCTTTGTGGAGCCGTTGATTCTGTTTTT
AAGCCGCAAGCGTCAGCCCTGCCAGCTTCTGGACCTTGGAGCCATCGAGG
CCCTCTCATACTATGGCCATGATTTTCTAAAGGCTATGGGAAAACCACAG
GAACTGCTGCAGCTGACACTCGCGAGCATCAAGTACGATCCTAGTCACTA
TCCCATCCTCTCGTTGGACTCGACCCTGCTGCAGAAATGCGCCGCCCTGC
AGGTGCTCTCCCTCGACTACGACACACTTTCTGACGAACTGCTGCACACT
ATCCAGGTGCTTCCGCTGCGGAAACTTTTGATCGCAGTGCACGGCCTGGA
TAGCGAAGAGCATCCCGATGTGTCGGAGACGGCCT
BS15441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4911-PA | 1353 | CG4911-RA | 1..769 | 17..785 | 3845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4911-RC | 4775 | CG4911-RC | 102..870 | 17..785 | 3845 | 100 | Plus |
CG4911-RB | 2318 | CG4911-RB | 102..870 | 17..785 | 3845 | 100 | Plus |
CG4911-RA | 2321 | CG4911-RA | 102..870 | 17..785 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9071157..9071521 | 785..421 | 1825 | 100 | Minus |
3L | 28110227 | 3L | 9071746..9071902 | 315..159 | 785 | 100 | Minus |
3L | 28110227 | 3L | 9072488..9072630 | 159..17 | 715 | 100 | Minus |
3L | 28110227 | 3L | 9071583..9071691 | 420..312 | 530 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:34:00 has no hits.
BS15441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:03 Download gff for
BS15441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-PA | 1..769 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:01 Download gff for
BS15441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-PA | 1..769 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:03:30 Download gff for
BS15441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-RA | 100..870 | 14..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:24 Download gff for
BS15441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-RA | 100..870 | 14..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:24 Download gff for
BS15441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9071157..9071521 | 421..785 | 100 | <- | Minus |
3L | 9071583..9071687 | 316..420 | 100 | <- | Minus |
3L | 9071746..9071901 | 160..315 | 100 | <- | Minus |
3L | 9072488..9072632 | 14..159 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:03:30 Download gff for
BS15441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9065588..9065732 | 14..159 | 99 | | Minus |
arm_3L | 9064257..9064621 | 421..785 | 100 | <- | Minus |
arm_3L | 9064683..9064787 | 316..420 | 100 | <- | Minus |
arm_3L | 9064846..9065001 | 160..315 | 100 | <- | Minus |
BS15441.complete Sequence
1385 bp assembled on 2008-08-15
GenBank Submission: KX805653
> BS15441.complete
GAAGTTATCCCTTTACATGAATTTTAGCCAACGCCAACCAGAATGGCACA
GAATACCATCGGTGGCACTAAATCACATATTCGACTATCTAAATCCCCAG
GATCGTCGGTCGGCAGCGGGTGTATGTTTTTCTTGGAGACATGCCTTATT
TCAAAAACGCTATTTTAGAAACTTTCGCTTTCAATTGGATGTGGGATGCG
ATGATCAGTTGGCCTTCTTCCATCGCTCCATGGCCAACTTGGCCATGGAA
CTGATAGTAGTCTTCGACTTTCAAAATGCAGTTCACATCCAGAAAATGCG
AGGACTTCTATACAAAGTGGCGCACTGTGATAACATCCAGAAATTGCGTT
TCCAAACCCACAATGTCGGCCTTGTTGCCATCGGAAACATGCATAGCGAG
CACTTGTTGGCCATCGAACAATGCTTTGTGGAGCCGTTGATTCTGTTTTT
AAGCCGCAAGCGTCAGCCCTGCCAGCTTCTGGACCTTGGAGCCATCGAGG
CCCTCTCATACTATGGCCATGATTTTCTAAAGGCTATGGGAAAACCACAG
GAACTGCTGCAGCTGACACTCGCGAGCATCAAGTACGATCCTAGTCACTA
TCCCATCCTCTCGTTGGACTCGACCCTGCTGCAGAAATGCGCCGCCCTGC
AGGTGCTCTCCCTCGACTACGACACACTTTCTGACGAACTGCTGCACACT
ATCCAGGTGCTTCCGCTGCGGAAACTTTTGATCGCAGTGCACGGCCTGGA
TAGCGAAGAGCATCCCGATGTGTCGGAGACGGCCTGGTCCAACTTTTCGG
ATCACTTTTCGAGCATTGAGTTGGTGCTGACCCTTGTGTATGCCTATGAG
GCCATCGCACTACTGCAGCATCGTGTGCTGCGTAGCAATATGCCTGTAAC
CCATGTGCGACTGCTATTCTGCGAAAAGATGAACGCCGAAGCCTTGGACT
GGATGTCGTTGCATTACAGGGAAACTCTGCGCAGCATTCACTATGTGGAC
GCGCCGTACAAATATTCCAATCGCATGAACTCCAGTCGCCGTGTCTCTTT
ACTCCAGGATCCATTCGTAATGATGGCCTGGCGCTGCAAACAGCTGGAGG
AGATCGTAGTGCACGGGTACTTGATGGATCCGCATAACCTCGTGGGCATT
GCCCGTCTTCGGGGTCGGCAGCTAAAGCGTCTGGAAGTCTCCATGATCGA
TTGGTCAGGCGCTCCTTTGCTGAACGCCTACAATGAAGAGATAAGCACCT
TACTGGGACAACAATGGTCACCCATCAGCTTTGACAAAATGCCGCCATCG
TTGTTCTACGACAACGATTTACGCGATCAGTTCGTGTACGAAATGCTGCG
CCAGGATCTCCGCCAGTAAAAGCTTTCTAGACCAT
BS15441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4911-RC | 1353 | CG4911-PC | 1..1353 | 17..1369 | 6765 | 100 | Plus |
CG4911-RA | 1353 | CG4911-PA | 1..1353 | 17..1369 | 6765 | 100 | Plus |
CG4911-RB | 1350 | CG4911-PB | 1..1350 | 17..1369 | 6685 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4911-RC | 4775 | CG4911-RC | 102..1454 | 17..1369 | 6765 | 100 | Plus |
CG4911-RA | 2321 | CG4911-RA | 102..1454 | 17..1369 | 6765 | 100 | Plus |
CG4911-RB | 2318 | CG4911-RB | 102..1451 | 17..1369 | 6685 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9070704..9071521 | 1238..421 | 4090 | 100 | Minus |
3L | 28110227 | 3L | 9071746..9071902 | 315..159 | 785 | 100 | Minus |
3L | 28110227 | 3L | 9072488..9072630 | 159..17 | 715 | 100 | Minus |
3L | 28110227 | 3L | 9070516..9070647 | 1369..1238 | 660 | 100 | Minus |
3L | 28110227 | 3L | 9071583..9071691 | 420..312 | 530 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:03 has no hits.
BS15441.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:58 Download gff for
BS15441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-RA | 98..1452 | 14..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:40 Download gff for
BS15441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-RA | 102..1452 | 17..1367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:03 Download gff for
BS15441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-RA | 100..1450 | 17..1367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:38 Download gff for
BS15441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4911-RA | 102..1452 | 17..1367 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:38 Download gff for
BS15441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9072488..9072630 | 17..159 | 100 | | Minus |
3L | 9070705..9071521 | 421..1237 | 100 | <- | Minus |
3L | 9070518..9070647 | 1238..1367 | 100 | <- | Minus |
3L | 9071583..9071687 | 316..420 | 100 | <- | Minus |
3L | 9071746..9071901 | 160..315 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:40 Download gff for
BS15441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9063618..9063747 | 1238..1367 | 100 | <- | Minus |
arm_3L | 9063805..9064621 | 421..1237 | 100 | <- | Minus |
arm_3L | 9064683..9064787 | 316..420 | 100 | <- | Minus |
arm_3L | 9064846..9065001 | 160..315 | 100 | <- | Minus |
arm_3L | 9065588..9065730 | 17..159 | 100 | | Minus |
BS15441.pep Sequence
Translation from 16 to 1368
> BS15441.pep
MNFSQRQPEWHRIPSVALNHIFDYLNPQDRRSAAGVCFSWRHALFQKRYF
RNFRFQLDVGCDDQLAFFHRSMANLAMELIVVFDFQNAVHIQKMRGLLYK
VAHCDNIQKLRFQTHNVGLVAIGNMHSEHLLAIEQCFVEPLILFLSRKRQ
PCQLLDLGAIEALSYYGHDFLKAMGKPQELLQLTLASIKYDPSHYPILSL
DSTLLQKCAALQVLSLDYDTLSDELLHTIQVLPLRKLLIAVHGLDSEEHP
DVSETAWSNFSDHFSSIELVLTLVYAYEAIALLQHRVLRSNMPVTHVRLL
FCEKMNAEALDWMSLHYRETLRSIHYVDAPYKYSNRMNSSRRVSLLQDPF
VMMAWRCKQLEEIVVHGYLMDPHNLVGIARLRGRQLKRLEVSMIDWSGAP
LLNAYNEEISTLLGQQWSPISFDKMPPSLFYDNDLRDQFVYEMLRQDLRQ
*
BS15441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4911-PC | 450 | CG4911-PC | 1..450 | 1..450 | 2363 | 100 | Plus |
CG4911-PA | 450 | CG4911-PA | 1..450 | 1..450 | 2363 | 100 | Plus |
CG4911-PB | 449 | CG4911-PB | 1..449 | 1..450 | 2346 | 99.8 | Plus |