Clone BS15441 Report

Search the DGRC for BS15441

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG4911-RA
Protein status:BS15441.pep: full length peptide match
Sequenced Size:1385

Clone Sequence Records

BS15441.3prime Sequence

758 bp (671 high quality bases) assembled on 2006-12-21

> BS15441.3prime
ATGGNCTAGAAAGCTTTTACTTGCGGAGATCCTGGCGCAGCATTTCGTAC
ACGAACTGATCGCGTAAATCGTTGTCGTAGAACAACGATGGCGGCATTTT
GTCAAAGCTGATGGGTGACCATTGTTGTCCCAGTAAGGTGCTTATCTCTT
CATTGTAGGCGTTCAGCAAAGGAGCGCCTGACCAATCGATCATGGAGACT
TCCAGACGCTTTAGCTGCCGACCCCGAAGACGGGCAATGCCCACGAGGTT
ATGCGGATCCATCAAGTACCCGTGCACTACGATCTCCTCCAGCTGTTTGC
AGCGCCAGGCCATCATTACGAATGGATCCTGGAGTAAAGAGACACGGCGA
CTGGAGTTCATGCGATTGGAATATTTGTACGGCGCGTCCACATAGTGAAT
GCTGCGCAGAGTTTCCCTGTAATGCAACGACATCCAGTCCAAGGCTTCGG
CGTTCATCTTTTCGCAGAATAGCAGTCGCACATGGGTTACAGGCATATTG
CTACGCAGCACACGATGCTGCAGTAGTGCGATGGCCTCATAGGCATACAC
AAGGGTCAGCACCAACTCAATGCTCGAAAAGTGATCCGAAAAGTTGGACC
AGGCCGTCTCCGACACATCGGGATGCTCTTCGCTATCCAGGCCGTGCACT
GCGATCAAAAGTTTCCGCAGCGGAAGCACCTGGATAGTGTGCAGCAGTTC
GTCAGAAAGTGTGTCGTAGTCGAGGGAGAGCACCTGCAGGGCGGCGCATT
TCTGCAGC

BS15441.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-PA 1353 CG4911-RA 612..1353 758..17 3685 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-RC 4775 CG4911-RC 713..1454 758..17 3695 99.9 Minus
CG4911-RA 2321 CG4911-RA 713..1454 758..17 3695 99.9 Minus
CG4911-RB 2318 CG4911-RB 713..1451 758..17 3640 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9070704..9071314 148..758 3055 100 Plus
3L 28110227 3L 9070516..9070647 17..148 645 99.2 Plus
Blast to na_te.dros performed on 2015-01-30 03:18:55 has no hits.

BS15441.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:02 Download gff for BS15441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-PA 612..1353 17..758 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:03:58 Download gff for BS15441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-PA 612..1353 17..758 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:35 Download gff for BS15441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 713..1454 17..758 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:09:50 Download gff for BS15441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 713..1454 17..758 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:09:50 Download gff for BS15441.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9070516..9070647 17..148 99 <- Plus
3L 9070705..9071314 149..758 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:35 Download gff for BS15441.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9063616..9063747 17..148 99 <- Plus
arm_3L 9063805..9064414 149..758 100   Plus

BS15441.5prime Sequence

785 bp (755 high quality bases) assembled on 2006-12-21

> BS15441.5prime
GAAGTTATCCCTTTACATGAATTTTAGCCAACGCCAACCAGAATGGCACA
GAATACCATCGGTGGCACTAAATCACATATTCGACTATCTAAATCCCCAG
GATCGTCGGTCGGCAGCGGGTGTATGTTTTTCTTGGAGACATGCCTTATT
TCAAAAACGCTATTTTAGAAACTTTCGCTTTCAATTGGATGTGGGATGCG
ATGATCAGTTGGCCTTCTTCCATCGCTCCATGGCCAACTTGGCCATGGAA
CTGATAGTAGTCTTCGACTTTCAAAATGCAGTTCACATCCAGAAAATGCG
AGGACTTCTATACAAAGTGGCGCACTGTGATAACATCCAGAAATTGCGTT
TCCAAACCCACAATGTCGGCCTTGTTGCCATCGGAAACATGCATAGCGAG
CACTTGTTGGCCATCGAACAATGCTTTGTGGAGCCGTTGATTCTGTTTTT
AAGCCGCAAGCGTCAGCCCTGCCAGCTTCTGGACCTTGGAGCCATCGAGG
CCCTCTCATACTATGGCCATGATTTTCTAAAGGCTATGGGAAAACCACAG
GAACTGCTGCAGCTGACACTCGCGAGCATCAAGTACGATCCTAGTCACTA
TCCCATCCTCTCGTTGGACTCGACCCTGCTGCAGAAATGCGCCGCCCTGC
AGGTGCTCTCCCTCGACTACGACACACTTTCTGACGAACTGCTGCACACT
ATCCAGGTGCTTCCGCTGCGGAAACTTTTGATCGCAGTGCACGGCCTGGA
TAGCGAAGAGCATCCCGATGTGTCGGAGACGGCCT

BS15441.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-PA 1353 CG4911-RA 1..769 17..785 3845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-RC 4775 CG4911-RC 102..870 17..785 3845 100 Plus
CG4911-RB 2318 CG4911-RB 102..870 17..785 3845 100 Plus
CG4911-RA 2321 CG4911-RA 102..870 17..785 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9071157..9071521 785..421 1825 100 Minus
3L 28110227 3L 9071746..9071902 315..159 785 100 Minus
3L 28110227 3L 9072488..9072630 159..17 715 100 Minus
3L 28110227 3L 9071583..9071691 420..312 530 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 18:34:00 has no hits.

BS15441.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:03 Download gff for BS15441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-PA 1..769 17..785 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:01 Download gff for BS15441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-PA 1..769 17..785 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:03:30 Download gff for BS15441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 100..870 14..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:24 Download gff for BS15441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 100..870 14..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:24 Download gff for BS15441.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9071157..9071521 421..785 100 <- Minus
3L 9071583..9071687 316..420 100 <- Minus
3L 9071746..9071901 160..315 100 <- Minus
3L 9072488..9072632 14..159 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:03:30 Download gff for BS15441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9065588..9065732 14..159 99   Minus
arm_3L 9064257..9064621 421..785 100 <- Minus
arm_3L 9064683..9064787 316..420 100 <- Minus
arm_3L 9064846..9065001 160..315 100 <- Minus

BS15441.complete Sequence

1385 bp assembled on 2008-08-15

GenBank Submission: KX805653

> BS15441.complete
GAAGTTATCCCTTTACATGAATTTTAGCCAACGCCAACCAGAATGGCACA
GAATACCATCGGTGGCACTAAATCACATATTCGACTATCTAAATCCCCAG
GATCGTCGGTCGGCAGCGGGTGTATGTTTTTCTTGGAGACATGCCTTATT
TCAAAAACGCTATTTTAGAAACTTTCGCTTTCAATTGGATGTGGGATGCG
ATGATCAGTTGGCCTTCTTCCATCGCTCCATGGCCAACTTGGCCATGGAA
CTGATAGTAGTCTTCGACTTTCAAAATGCAGTTCACATCCAGAAAATGCG
AGGACTTCTATACAAAGTGGCGCACTGTGATAACATCCAGAAATTGCGTT
TCCAAACCCACAATGTCGGCCTTGTTGCCATCGGAAACATGCATAGCGAG
CACTTGTTGGCCATCGAACAATGCTTTGTGGAGCCGTTGATTCTGTTTTT
AAGCCGCAAGCGTCAGCCCTGCCAGCTTCTGGACCTTGGAGCCATCGAGG
CCCTCTCATACTATGGCCATGATTTTCTAAAGGCTATGGGAAAACCACAG
GAACTGCTGCAGCTGACACTCGCGAGCATCAAGTACGATCCTAGTCACTA
TCCCATCCTCTCGTTGGACTCGACCCTGCTGCAGAAATGCGCCGCCCTGC
AGGTGCTCTCCCTCGACTACGACACACTTTCTGACGAACTGCTGCACACT
ATCCAGGTGCTTCCGCTGCGGAAACTTTTGATCGCAGTGCACGGCCTGGA
TAGCGAAGAGCATCCCGATGTGTCGGAGACGGCCTGGTCCAACTTTTCGG
ATCACTTTTCGAGCATTGAGTTGGTGCTGACCCTTGTGTATGCCTATGAG
GCCATCGCACTACTGCAGCATCGTGTGCTGCGTAGCAATATGCCTGTAAC
CCATGTGCGACTGCTATTCTGCGAAAAGATGAACGCCGAAGCCTTGGACT
GGATGTCGTTGCATTACAGGGAAACTCTGCGCAGCATTCACTATGTGGAC
GCGCCGTACAAATATTCCAATCGCATGAACTCCAGTCGCCGTGTCTCTTT
ACTCCAGGATCCATTCGTAATGATGGCCTGGCGCTGCAAACAGCTGGAGG
AGATCGTAGTGCACGGGTACTTGATGGATCCGCATAACCTCGTGGGCATT
GCCCGTCTTCGGGGTCGGCAGCTAAAGCGTCTGGAAGTCTCCATGATCGA
TTGGTCAGGCGCTCCTTTGCTGAACGCCTACAATGAAGAGATAAGCACCT
TACTGGGACAACAATGGTCACCCATCAGCTTTGACAAAATGCCGCCATCG
TTGTTCTACGACAACGATTTACGCGATCAGTTCGTGTACGAAATGCTGCG
CCAGGATCTCCGCCAGTAAAAGCTTTCTAGACCAT

BS15441.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-RC 1353 CG4911-PC 1..1353 17..1369 6765 100 Plus
CG4911-RA 1353 CG4911-PA 1..1353 17..1369 6765 100 Plus
CG4911-RB 1350 CG4911-PB 1..1350 17..1369 6685 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-RC 4775 CG4911-RC 102..1454 17..1369 6765 100 Plus
CG4911-RA 2321 CG4911-RA 102..1454 17..1369 6765 100 Plus
CG4911-RB 2318 CG4911-RB 102..1451 17..1369 6685 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9070704..9071521 1238..421 4090 100 Minus
3L 28110227 3L 9071746..9071902 315..159 785 100 Minus
3L 28110227 3L 9072488..9072630 159..17 715 100 Minus
3L 28110227 3L 9070516..9070647 1369..1238 660 100 Minus
3L 28110227 3L 9071583..9071691 420..312 530 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 13:49:03 has no hits.

BS15441.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:58 Download gff for BS15441.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 98..1452 14..1369 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:40 Download gff for BS15441.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 102..1452 17..1367 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:03 Download gff for BS15441.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 100..1450 17..1367 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:38 Download gff for BS15441.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 102..1452 17..1367 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:38 Download gff for BS15441.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9072488..9072630 17..159 100   Minus
3L 9070705..9071521 421..1237 100 <- Minus
3L 9070518..9070647 1238..1367 100 <- Minus
3L 9071583..9071687 316..420 100 <- Minus
3L 9071746..9071901 160..315 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:40 Download gff for BS15441.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9063618..9063747 1238..1367 100 <- Minus
arm_3L 9063805..9064621 421..1237 100 <- Minus
arm_3L 9064683..9064787 316..420 100 <- Minus
arm_3L 9064846..9065001 160..315 100 <- Minus
arm_3L 9065588..9065730 17..159 100   Minus

BS15441.pep Sequence

Translation from 16 to 1368

> BS15441.pep
MNFSQRQPEWHRIPSVALNHIFDYLNPQDRRSAAGVCFSWRHALFQKRYF
RNFRFQLDVGCDDQLAFFHRSMANLAMELIVVFDFQNAVHIQKMRGLLYK
VAHCDNIQKLRFQTHNVGLVAIGNMHSEHLLAIEQCFVEPLILFLSRKRQ
PCQLLDLGAIEALSYYGHDFLKAMGKPQELLQLTLASIKYDPSHYPILSL
DSTLLQKCAALQVLSLDYDTLSDELLHTIQVLPLRKLLIAVHGLDSEEHP
DVSETAWSNFSDHFSSIELVLTLVYAYEAIALLQHRVLRSNMPVTHVRLL
FCEKMNAEALDWMSLHYRETLRSIHYVDAPYKYSNRMNSSRRVSLLQDPF
VMMAWRCKQLEEIVVHGYLMDPHNLVGIARLRGRQLKRLEVSMIDWSGAP
LLNAYNEEISTLLGQQWSPISFDKMPPSLFYDNDLRDQFVYEMLRQDLRQ
*

BS15441.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-PC 450 CG4911-PC 1..450 1..450 2363 100 Plus
CG4911-PA 450 CG4911-PA 1..450 1..450 2363 100 Plus
CG4911-PB 449 CG4911-PB 1..449 1..450 2346 99.8 Plus