Clone Sequence Records
BS15443.complete Sequence
2828 bp assembled on 2009-12-07
GenBank Submission: KX802220
> BS15443.complete
GAAGTTATCAGTCGACATGTCCAACATAACGGCGGCGGTTATAGCCAACC
GCAACAAAAAGCATTTCCTGGGCGTCCCAGCCCCATTGGGCTATGTTGCC
GGCGTCGGTCGTGGAGCGACAGGATTCACCACTCGGTCCGATATTGGTCC
TGCCCGTGATGCAAACGATGTATCCGACGACCGCCATGCTCCGCCGGCCA
CCAAACGTAAGAAAAAAGACGAAGAGGAGGAGGAGGACGAAGACTTGAAC
GACTCAAACTATGACGAGTTTAGTGGTTACAGCGGCTCCCTGTTCTCCAA
GGATCCGTACGACAAGGATGACGAGGAGGCGGACGCTATCTACGATTCGA
TAGACAAGCGAATGGACGAAAAGCGCAAAGAGTATCGTGATCGCCGGCTG
CGTGAGGATTTGGAGCGGTACCGCCAGGAGCGACCGAAGATCCAGCAGCA
GTTCAGTGACCTGAAACGCTCACTGGCCAGTGTCACATCGGAGGAGTGGT
CCACGATTCCTGAAGTGGGCGACAGTCGAAACAGAAAGCAACGAAATCCA
AGGGCCGAAAAGTTTACCCCTCTGCCGGACAGCTTGATATCCAGAAATCT
TGGCGGCGAGTCGTCCTCTACGTTGGATCCGTCCTCGGGCTTGGCTTCTA
TGGTGCCTGGCGTAGCTACTCCAGGCATGCTGACACCTACGGGTGATCTT
GATCTGCGAAAGATTGGCCAGGCTCGTAACACTCTTATGAACGTCAAGCT
TTCGCAGGTTTCCGATTCCGTGACAGGCCAAACGGTGGTGGATCCCAAGG
GCTATCTCACCGACCTGCAGAGTATGATTCCCACTTATGGTGGTGACATA
AACGACATCAAGAAGGCTCGTTTGTTGCTCAAGAGTGTGAGGGAAACGAA
TCCTAACCATCCACCAGCTTGGATTGCCTCCGCCCGTTTGGAAGAAGTGA
CTGGCAAGGTTCAGATGGCGAGGAATCTGATAATGCGGGGCTGCGAAATG
AACATCCAGTCTGAGGATCTCTGGCTGGAAGCAGCTCGCCTTCAGCCGCC
AGATACAGCCAAAGCGGTGATCGCGCAAGCGGCTCGTCATATTCCTACCT
CGGTCAGGATCTGGATTAAAGCCGCAGATCTGGAATCGGAGACCAAAGCT
AAGCGTAGAGTTTTCAGAAAAGCTCTAGAGCATATTCCAAATTCAGTTCG
TCTGTGGAAGGCGGCTGTGGAACTCGAGAATCCTGATGATGCACGGATTC
TACTCTCTCGCGCCGTGGAGTGCTGCAACACCAGCGTTGAACTTTGGTTG
GCTCTCGCCCGCTTGGAAACCTACGAGAACGCCCGAAAGGTTCTAAACAA
GGCTCGCGAGAATATTCCCACTGATCGCCAGATTTGGACCACAGCTGCTA
AGTTGGAGGAGGCCAATGGTAATATTCACATGGTGGAAAAGATCATTGAT
CGATCATTGACCTCGCTTACCGTCAACGGAGTGGAGATCAACCGTGATCA
GTGGTTCCAGGAGGCCATCGAGGCGGAAAAATCAGGAGCAGTCAACTGTT
GCCAATCCATTGTTAAGGCTGTCATTGGAATAGGAGTGGAGGAGGAGGAT
CGCAAGCAGACTTGGATTGATGATGCTGAATTCTGCGCAAAGGAAAATGC
ATTTGAGTGTGCTCGAGCTGTTTACGCTCATGCCCTCCAAATATTTCCCT
CGAAGAAAAGCATCTGGTTGCGAGCCGCCTACTTTGAAAAGAACCATGGC
ACCCGCGAATCTTTGGAGGCCCTGTTGCAGCGAGCCGTGGCTCATTGTCC
TAAATCGGAGATTCTCTGGCTGATGGGGGCCAAATCCAAATGGATGGCTG
GAGACGTTCCAGCCGCGAGAGGCATTTTGTCCTTGGCTTTCCAGGCCAAT
CCCAATTCCGAGGACATTTGGTTGGCTGCCGTTAAGTTGGAATCAGAGAA
CTCGGAATATGAGCGGGCGAGACGCTTGTTAGCCAAGGCTAGAGGATCGG
CACCGACACCAAGGGTGATGATGAAATCAGCTCGCCTGGAATGGGCTTTG
GAAAAGTTCGACGAAGCTCTGCGGTTGCTGGAGGAGGCGGTGGAAGTGTT
CCCAGATTTCCCCAAACTGTGGATGATGAAGGGTCAGATTGAGGAGCAGC
AGAGACGGACAGATGATGCGGCTGCCACCTATACTCTGGGCTTGAAAAAG
TGTCCTACGTCCATCCCACTTTGGATTCTTTCCGCCAATCTAGAAGAGCG
CAAAGGAGTGCTGACGAAGGCTCGATCCATTCTGGAACGAGGACGTTTAC
GCAACCCCAAAGTGGCTGTGCTCTGGCTGGAGGCCATCAGGGTGGAGCTG
CGTGCGGGCCTCAAGGAGATTGCCAGCACAATGATGGCAAGAGCACTGCA
GGAATGTCCCAACGCTGGTGAGCTATGGGCGGAGGCTATCTTCATGGAAA
CCAAGCCGCAGCGAAAGACCAAGTCAGTGGATGCTCTCAAGAAATGCGAG
CACGATCCACATGTGCTGCTAGCTGTATCAAAACTGTTCTGGTCTGAGCA
CAAGTTCTCTAAGTGCCGAGACTGGTTTAATCGAACTGTCAAGATCGATC
CAGATCTAGGTGATGCTTGGGCATATTTCTACAAGTTCGAATTACTCCAC
GGCACGGAGGCGCAGCAGCAGGAGGTCCTCGATCGGTGCATTTCTGCAGA
GCCCACGCACGGCGAGTCCTGGTGTCGGGTCAGCAAGAACATCCAGAACT
GGCAGTTCAAGACACCTGAGGTGCTGCGTGCTGTTGTCCGGGAGCTATCC
ATACCCATCTAAAAGCTTTCTAGACCAT
BS15443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 2796 | CG6841-PB | 1..2796 | 17..2812 | 13980 | 100 | Plus |
| CG6841-RA | 2796 | CG6841-PA | 1..2796 | 17..2812 | 13980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 3382 | CG6841-RB | 123..2918 | 17..2812 | 13980 | 100 | Plus |
| CG6841-RA | 3309 | CG6841-RA | 123..2918 | 17..2812 | 13980 | 100 | Plus |
| CG14077-RB | 3077 | CG14077-RB | 2827..3051 | 2812..2588 | 1125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18905658..18907177 | 114..1633 | 7600 | 100 | Plus |
| 3L | 28110227 | 3L | 18907259..18908214 | 1634..2589 | 4780 | 100 | Plus |
| 3L | 28110227 | 3L | 18908286..18908510 | 2588..2812 | 1125 | 100 | Plus |
| 3L | 28110227 | 3L | 18905494..18905591 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:14:05 has no hits.
BS15443.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:13 Download gff for
BS15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 121..2914 | 17..2810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:16 Download gff for
BS15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 123..2916 | 17..2810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:14 Download gff for
BS15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 121..2914 | 17..2810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:56 Download gff for
BS15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 123..2916 | 17..2810 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:56 Download gff for
BS15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18905494..18905591 | 17..114 | 100 | -> | Plus |
| 3L | 18905659..18907177 | 115..1633 | 100 | -> | Plus |
| 3L | 18907259..18908212 | 1634..2587 | 100 | -> | Plus |
| 3L | 18908286..18908508 | 2588..2810 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:16 Download gff for
BS15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18898594..18898691 | 17..114 | 100 | -> | Plus |
| arm_3L | 18898759..18900277 | 115..1633 | 100 | -> | Plus |
| arm_3L | 18900359..18901312 | 1634..2587 | 100 | -> | Plus |
| arm_3L | 18901386..18901608 | 2588..2810 | 100 | | Plus |
BS15443.3prime Sequence
927 bp (712 high quality bases) assembled on 2006-12-21
> BS15443.3prime
ATGGTCTAGAAAGCTTTTACATGGGTATGGATAGCTCCCGGACAACAGCA
CGCAGCACCTCAGGTGTCTTGAACTGCCAGTTCTGGATGTTCTTGCTGAC
CCGACACCAGGACTCGCCGTGCGTGGGCTCTGCAGAAATGCACCGATCGA
GGACCTCCTGCTGCTGCGCCTCCGTGCCGTGGAGTAATTCGAACTTGTAG
AAATATGCCCAAGCATCACCTAGATCTGGATCGATCTTGACAGTTCGATT
AAACCAGTCTCGGCACTTAGAGAACTTGTGCTCAGACCAGAACAGTTTTG
ATACAGCTAGCAGCACATGTGGATCGTGCTCGCATTTCTTGAGAGCATCC
ACTGACTTGGTCTTTCGCTGCGGCTTGGTTTCCATGAAGATAGCCTCCGC
CCATAGCTCACCAGCGTTGGGACATTCCTGCAGTGCTCTTGCCATCATTG
TGCTGGCAATCTCCTTGAGGCCCGCACGCAGCTCCACCCTGATGGCCTCC
AGCCAGAGCACAGCCACTTTGGGGTTGCGTAAACGTCCTCGTTCCAGAAT
GGATCGAGCCTTCGTCAGCACTCCTTTGCGCTCTTCTAGATTGGCGGAAA
GAATCCAAAGTGGGATGGACGTAGGACACTTTTTCAAGCCCAGAGTATAG
GTGGCAGCCGCATCATCTGTCCGTCTCTGCTGCTCCTCAATCTGACCCTT
CATCATCCACAGTTTGGGGAAATCTGGGAACACTTCCACCGCCTCCTCCA
GCAACCGCAGAGCTTCGTCGAACTTTTCCAAAGCCCATTCCAGGCGAGCT
GATTTCATCATCACCCTTGGTGTCGGTGCCGATCCTCTAGCCTTGGCTAA
CAGCGTCTCGCCCGCTCATATTCCGAGTTCTCTGATTCCAACTTACGGCA
GCCAACCAAATGTCCTCGGAATTGGGA
BS15443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-PA | 2796 | CG6841-RA | 1961..2792 | 852..21 | 4160 | 100 | Minus |
| CG6841-PA | 2796 | CG6841-RA | 1917..1960 | 895..852 | 220 | 100 | Minus |
| CG6841-PA | 2796 | CG6841-RA | 1884..1916 | 927..895 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 3382 | CG6841-RB | 2006..2918 | 927..17 | 4500 | 99.7 | Minus |
| CG6841-RA | 3309 | CG6841-RA | 2006..2918 | 927..17 | 4500 | 99.7 | Minus |
| CG14077-RB | 3077 | CG14077-RB | 2827..3051 | 17..241 | 1110 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18907525..18908214 | 927..240 | 3350 | 99.7 | Minus |
| 3L | 28110227 | 3L | 18908286..18908510 | 241..17 | 1110 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:06:56 has no hits.
BS15443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:07 Download gff for
BS15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-PA | 1885..2796 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:06 Download gff for
BS15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-PA | 1885..2796 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:32:08 Download gff for
BS15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 2007..2924 | 7..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:57 Download gff for
BS15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 2007..2924 | 7..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:57 Download gff for
BS15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18908286..18908510 | 17..241 | 99 | -> | Minus |
| 3L | 18907526..18908212 | 242..926 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:32:08 Download gff for
BS15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18900626..18901312 | 242..926 | 99 | -> | Minus |
| arm_3L | 18901386..18901610 | 17..241 | 99 | -> | Minus |
BS15443.5prime Sequence
848 bp (817 high quality bases) assembled on 2006-12-21
> BS15443.5prime
GAAGTTATCCCTCGACATGTCCAACATAACGGCGGCGGTTATAGCCAACC
GCAACAAAAAGCATTTCCTGGGCGTCCCAGCCCCATTGGGCTATGTTGCC
GGCGTCGGTCGTGGAGCGACAGGATTCACCACTCGGTCCGATATTGGTCC
TGCCCGTGATGCAAACGATGTATCCGACGACCGCCATGCTCCGCCGGCCA
CCAAACGTAAGAAAAAAGACGAAGAGGAGGAGGAGGACGAAGACTTGAAC
GACTCAAACTATGACGAGTTTAGTGGTTACAGCGGCTCCCTGTTCTCCAA
GGATCCGTACGACAAGGATGACGAGGAGGCGGACGCTATCTACGATTCGA
TAGACAAGCGAATGGACGAAAAGCGCAAAGAGTATCGTGATCGCCGGCTG
CGTGAGGATTTGGAGCGGTACCGCCAGGAGCGACCGAAGATCCAGCAGCA
GTTCAGTGACCTGAAACGCTCACTGGCCAGTGTCACATCGGAGGAGTGGT
CCACGATTCCTGAAGTGGGCGACAGTCGAAACAGAAAGCAACGAAATCCA
AGGGCCGAAAAGTTTACCCCTCTGCCGGACAGCTTGATATCCAGAAATCT
TGGCGGCGAGTCGTCCTCTACGTTGGATCCGTCCTCGGGCTTGGCTTCTA
TGGTGCCTGGCGTAGCTACTCCAGGCATGCTGACACCTACGGGTGATCTT
GATCTGCGAAAGATTGGCCAGGCTCGTAACACTCTTATGAACGTCAAGCT
TTCGCAGGTTTCCGATTCCGTGACAGGCCAAACGGTGGTGGATCCCAAGG
GCTATCTCACCGACCTGCAGAGTATGATTCCCACTTATGGTGGTGACA
BS15443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-PA | 2796 | CG6841-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 3382 | CG6841-RB | 123..954 | 17..848 | 4160 | 100 | Plus |
| CG6841-RA | 3309 | CG6841-RA | 123..954 | 17..848 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18905658..18906392 | 114..848 | 3675 | 100 | Plus |
| 3L | 28110227 | 3L | 18905494..18905591 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 04:35:32 has no hits.
BS15443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:08 Download gff for
BS15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:08 Download gff for
BS15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:32:21 Download gff for
BS15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 114..953 | 6..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:47:19 Download gff for
BS15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 114..953 | 6..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:47:19 Download gff for
BS15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18905485..18905591 | 6..114 | 95 | -> | Plus |
| 3L | 18905659..18906391 | 115..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:32:21 Download gff for
BS15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18898585..18898691 | 6..114 | 95 | -> | Plus |
| arm_3L | 18898759..18899491 | 115..847 | 100 | | Plus |
BS15443.pep Sequence
Translation from 16 to 2811
> BS15443.pep
MSNITAAVIANRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDAN
DVSDDRHAPPATKRKKKDEEEEEDEDLNDSNYDEFSGYSGSLFSKDPYDK
DDEEADAIYDSIDKRMDEKRKEYRDRRLREDLERYRQERPKIQQQFSDLK
RSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKFTPLPDSLISRNLGGESS
STLDPSSGLASMVPGVATPGMLTPTGDLDLRKIGQARNTLMNVKLSQVSD
SVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPP
AWIASARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKA
VIAQAARHIPTSVRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAA
VELENPDDARILLSRAVECCNTSVELWLALARLETYENARKVLNKARENI
PTDRQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEA
IEAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECAR
AVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVAHCPKSEIL
WLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKLESENSEYER
ARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFPDFPK
LWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLEERKGVLT
KARSILERGRLRNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNA
GELWAEAIFMETKPQRKTKSVDALKKCEHDPHVLLAVSKLFWSEHKFSKC
RDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPTHGE
SWCRVSKNIQNWQFKTPEVLRAVVRELSIPI*
BS15443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-PB | 931 | CG6841-PB | 1..931 | 1..931 | 4824 | 100 | Plus |
| CG6841-PA | 931 | CG6841-PA | 1..931 | 1..931 | 4824 | 100 | Plus |
| crn-PA | 702 | CG3193-PA | 79..554 | 302..778 | 211 | 22.6 | Plus |
