Clone BS15446 Report

Search the DGRC for BS15446

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG7510-RA
Protein status:BS15446.pep: full length peptide match
Sequenced Size:2882

Clone Sequence Records

BS15446.3prime Sequence

878 bp (729 high quality bases) assembled on 2006-12-21

> BS15446.3prime
ATGGTCTAGAAAGCTTCTATATGCGACTGCAGAAATTGTAGAGCAGCAGC
TTATCCTCAAAGTGATAAACGTTGTTTATGTGTCGCAAAACCCGGCCATC
GACCAGATGTCGGGCATAATGCACAGCCTCCATTCGATCCTTGGACAGTC
CCACCTCGATGAGCCAGCTGACGAACTCGGTGCCGTAGAACACTCTGCGA
TACACACGAATACGCCACCTTCGGTCCTTTGCAATATCCTTTTTGCAGTT
CTCCAAATGATGATTACGGAATTGTTCACAAATATGCTTGGTTTCGGGCC
GCACGTTTGACCAGTGCGGTAGGCTGACCACATTGGCTCCATACCATAAC
TTGCGCCATAGTTTCACAACTGGCATTAGAAGTTCGCCAATGTCGGTGAT
AAACACTGCCAAAACAATCAGACCTTGACCAAAGTTGAGGAAAGCATCGA
GGAAACTTAGTTCCAGATATATGCCCGACATTCCCTCCATGACCAATGTC
CAAATGGACACTGCCAGACCGACAAACATGGAGCACAGCAAAGTGATCAA
GAGCACGGTATGCTTCAAAGTTTGGTGCTCATCAGCGTCGCTCGGGTGTT
CCAGGGGCTCAAGTCCCCTTCTGTTCTGATCCTCATATCGCTCGATAATA
GTCTGACAACTTTGACGTGAGGTACTTGGGCCACAGTTAAAGGAGCTGCT
GCACATTTGATTGCGAATTTCTTCCGTGGCAGGTGCACTTTCGATCTTGT
TTAGATCTTTATTGTTGGCACCACTGGCTCGTTGGCGTGTGCGATTCAAC
AGATCCTCAATGTCCACAACCACGGTGCTGGTTGTTGAGGAATTGCTCAC
AGGCGCGCCGCCCGAACAGCAAGTTCCA

BS15446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7510-PA 2850 CG7510-RA 1989..2850 878..17 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7510-RB 4338 CG7510-RB 2492..3354 878..16 4315 100 Minus
CG7510-RA 3823 CG7510-RA 2468..3330 878..16 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17628860..17629237 719..342 1890 100 Minus
3L 28110227 3L 17629783..17629987 220..16 1025 100 Minus
3L 28110227 3L 17628641..17628799 878..720 795 100 Minus
3L 28110227 3L 17629289..17629419 345..215 655 100 Minus
Blast to na_te.dros performed on 2015-02-02 14:02:00 has no hits.

BS15446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:10 Download gff for BS15446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7510-PA 1990..2850 17..877 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:12 Download gff for BS15446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7510-PA 1990..2850 17..877 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:13:39 Download gff for BS15446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 2469..3333 13..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:50:53 Download gff for BS15446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 2469..3333 13..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:50:53 Download gff for BS15446.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17628642..17628799 720..877 100 -> Minus
3L 17628860..17629234 345..719 100 -> Minus
3L 17629290..17629415 219..344 100 -> Minus
3L 17629785..17629990 13..218 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:13:39 Download gff for BS15446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17621742..17621899 720..877 100 -> Minus
arm_3L 17621960..17622334 345..719 100 -> Minus
arm_3L 17622390..17622515 219..344 100 -> Minus
arm_3L 17622885..17623090 13..218 99   Minus

BS15446.5prime Sequence

819 bp (781 high quality bases) assembled on 2006-12-21

> BS15446.5prime
GAAGTTATCAGTCGACATGGACAGCTCCATGTACTACGCCAGCCAGCGGA
TTGCTGCCAGCACAGAGGCTAATGTCAGAGTCATCACCTCGACCATGGCC
TCATCTTTGGCCAATGGAACGGCGACGCCACGCGCCGACGACGGGGGCGT
ATCCATGAACAACTTTTACCCGGCGTTGGTTCAGTGTTTCGGCATCATCA
TTTGCGGTTACATTGCCGGACGCTTCAAGATCATCAGCAATGCGGAAACC
AAGGGTCTGGGCACGTTTGTGGGCACCTTCGCCCTGCCCTCGCTGATCTT
CCTGTCCCTGGTCGAGCTCAACTGGAGCGCTGTCAACTGGAGCTTCCTTC
TGGCCATGCTCGTCTCCAAGGCGGTGGTCTTCTTCGCCGTGCTGATCATC
TCGCTGCTGGTCGCCAGGCCCCTGAACTACGCTCGCGGCGGCCTGATGGC
AATATTCTGCACCCAGAGCAATGACTTCGCTATCGGCTATCCCATAGTTA
TGGCTCTTTATAAGGATGTCCATCCGGAATATGCCTCGTATCTGTACCTG
ATGGCTCCTATCTCACTGGCTATTCTAAATCCAGTTGGTCTGGTCCTCAT
GGAGATCTCCAAGATAATCAAGAACAAGGAGGATGTGACCCGCAATCCAC
CATTGTGTCCAGAAACTTGTCCCGCGGAACAGATGTCCAAACGGAATCGC
TGCCTGGGTGAACGGTCTATACTGGTTTTCAACACCCTAATTGCACTGTT
CTTTAACCCGTTGCTGCTGATGACCTTGCTGGGTGTTGCANGAGGATTCC
TGTTTCCCAACGGTCTGCC

BS15446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7510-PA 2850 CG7510-RA 1..803 17..819 3996 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7510-RB 4338 CG7510-RB 480..1282 17..819 4004 99.9 Plus
CG7510-RA 3823 CG7510-RA 480..1282 17..819 4004 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17626102..17626397 202..497 1465 99.7 Plus
3L 28110227 3L 17622303..17622493 17..207 955 100 Plus
3L 28110227 3L 17626692..17626874 637..819 904 99.5 Plus
3L 28110227 3L 17626491..17626632 496..637 710 100 Plus
Blast to na_te.dros performed on 2015-01-31 03:23:49 has no hits.

BS15446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:11 Download gff for BS15446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7510-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:13 Download gff for BS15446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7510-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:47:29 Download gff for BS15446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 472..1282 10..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:30 Download gff for BS15446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 472..1282 10..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:30 Download gff for BS15446.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17622295..17622493 10..207 98 -> Plus
3L 17626108..17626397 208..497 100 -> Plus
3L 17626493..17626632 498..637 100 -> Plus
3L 17626693..17626874 638..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:47:29 Download gff for BS15446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17615395..17615593 10..207 98 -> Plus
arm_3L 17619208..17619497 208..497 100 -> Plus
arm_3L 17619593..17619732 498..637 100 -> Plus
arm_3L 17619793..17619974 638..819 99   Plus

BS15446.complete Sequence

2882 bp assembled on 2009-12-07

GenBank Submission: KX800156

> BS15446.complete
GAAGTTATCAGTCGACATGGACAGCTCCATGTACTACGCCAGCCAGCGGA
TTGCTGCCAGCACAGAGGCTAATGTCAGAGTCATCACCTCGACCATGGCC
TCATCTTTGGCCAATGGAACGGCGACGCCACGCGCCGACGACGGGGGCGT
ATCCATGAACAACTTTTACCCGGCGTTGGTTCAGTGTTTCGGCATCATCA
TTTGCGGTTACATTGCCGGACGCTTCAAGATCATCAGCAATGCGGAAACC
AAGGGTCTGGGCACGTTTGTGGGCACCTTCGCCCTGCCCTCGCTGATCTT
CCTGTCCCTGGTCGAGCTCAACTGGAGCGCTGTCAACTGGAGCTTCCTTC
TGGCCATGCTCGTCTCCAAGGCGGTGGTCTTCTTCGCCGTGCTGATCATC
TCGCTGCTGGTCGCCAGGCCCCTGAACTACGCTCGCGGCGGCCTGATGGC
AATATTCTGCACCCAGAGCAATGACTTCGCTATCGGCTATCCCATAGTTA
TGGCTCTTTATAAGGATGTCCATCCGGAATATGCCTCGTATCTGTACCTG
ATGGCTCCTATCTCACTGGCTATTCTAAATCCAGTTGGTCTGGTCCTCAT
GGAGATCTCCAAGATAATCAAGAACAAGGAGGATGTGACCCGCAATCCAC
CATTGTGTCCAGAAACTTGTCCCGCGGAACAGATGTCCAAACGGAATCGC
TGCCTGGGTGAACGGTCTATACTGGTTTTCAACACCCTAATTGCACTGTT
CTTTAACCCGTTGCTGCTGATGACCTTGCTGGGTGTTGCAGGAGGATTCC
TGTTTCCCAACGGTCTGCCCGAAATGGTGTCCAGTACGTTGCGTGTTCTT
GGCCAGAGCTTTTCGGCAACGGCCTTGTTCCTACTCGGTCTTAAGATCGT
AGGTGGGACAGGATCCGAACGAAAGAGTATAGGCTTTCTATTGCCTGGTG
TTCTTATACTGGTTAAAATATTGGTGCTACCGCTCGTAATCCGACAGACG
GTAAACATTATGCAGTCTGGCCAGAACTTCAACGACACCACCGAGCTGAG
CACTTTTGGCTTTCTCTACGGCACCTTTCCAGCTGCCCCCGGGGCTTTCG
TCATTGCGACACAGTACAACATGGAGGTTGAATTGGTTGCTCGAAGCATG
GTTTTCTGTACATTCATCTCGGCACCGCTGATGTTTATATCAGCCAAAAT
GATATCGCTGACGAACCTGAAGCCATTGGACTATCTCCATGAGCTGGATG
CCTTTTCGTTTGACATCAGCGTGGCCGGCGCGGCTGCCTGTTGTATCATG
CTGGCATTGTTGATCGTGACGAAGCGCTTCAAGCGTATGCCCCAAAGAAT
AACTTTCTGTCTGGTGCTTTCTCAGCTCATGTGCTGCATAGGAGTAATCC
TCTGGTCCAAGATGGAGCACGTGCACCGTTGGCCTTTGTACCTGCAGTTT
CTTCTATTTAATATCGGAACATACAGCACTCGTCTGTGGACTGGTCTTTT
GGCCATTTCATTGCTCTTCCTGCAGTGTCGCAGCTTGTGCTTTGTGCTGA
AACTATGGCCCTATATGTTGGTGTTTGCCTGGGGTGTGCCGGCCGTATTA
TCTGCCCTTTTGATTGCCTTCGACTCGAATGTGATGTCGGGAGAGAAACA
CAATCCGAGCTTTCAGTACGGAAATGCTCAGGCAGCCATCTCGGTGTTTA
TGCTCGTTATGTGCTTTATAGTAACCGTTGGCTGTTTGGTGCTGCATCAG
CGTTATAAGAAACGATACGAAAAGTACATGACCTATTCACAATCATCCGA
TCTGCACTCGACCATATCAACGACTAATCTATTGAGTCACACGGATCAAT
CGTCCATCAGGCAAAGCGTTCGCACAGCTTCTTATTCGTCTTCATCCGAC
GATGAGGAAATGATACCAACAGCTGCGGGACTGCCAACCAGTAGGTCAAA
TGGTGCTGCCAGTGGAGGAGCAGGATCAGGCGGAGGAGGTTGTGGTTCTG
GCAATGGAACTTGCTGTTCGGGCGGCGCGCCTGTGAGCAATTCCTCAACA
ACCAGCACCGTGGTTGTGGACATTGAGGATCTGTTGAATCGCACACGCCA
ACGAGCCAGTGGTGCCAACAATAAAGATCTAAACAAGATCGAAAGTGCAC
CTGCCACGGAAGAAATTCGCAATCAAATGTGCAGCAGCTCCTTTAACTGT
GGCCCAAGTACCTCACGTCAAAGTTGTCAGACTATTATCGAGCGATATGA
GGATCAGAACAGAAGGGGACTTGAGCCCCTGGAACACCCGAGCGACGCTG
ATGAGCACCAAACTTTGAAGCATACCGTGCTCTTGATCACTTTGCTGTGC
TCCATGTTTGTCGGTCTGGCAGTGTCCATTTGGACATTGGTCATGGAGGG
AATGTCGGGCATATATCTGGAACTAAGTTTCCTCGATGCTTTCCTCAACT
TTGGTCAAGGTCTGATTGTTTTGGCAGTGTTTATCACCGACATTGGCGAA
CTTCTAATGCCAGTTGTGAAACTATGGCGCAAGTTATGGTATGGAGCCAA
TGTGGTCAGCCTACCGCACTGGTCAAACGTGCGGCCCGAAACCAAGCATA
TTTGTGAACAATTCCGTAATCATCATTTGGAGAACTGCAAAAAGGATATT
GCAAAGGACCGAAGGTGGCGTATTCGTGTGTATCGCAGAGTGTTCTACGG
CACCGAGTTCGTCAGCTGGCTCATCGAGGTGGGACTGTCCAAGGATCGAA
TGGAGGCTGTGCATTATGCCCGACATCTGGTCGATGGCCGGGTTTTGCGA
CACATAAACAACGTTTATCACTTTGAGGATAAGCTGCTGCTCTACAATTT
CTGCAGTCGCATATAGAAGCTTTCTAGACCAT

BS15446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7510-RA 2850 CG7510-PA 1..2850 17..2866 14250 100 Plus
CG7510-RB 2874 CG7510-PB 1..1774 17..1790 8870 100 Plus
CG7510-RB 2874 CG7510-PB 1799..2874 1791..2866 5380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7510-RA 3823 CG7510-RA 480..3330 17..2867 14255 100 Plus
CG7510-RB 4338 CG7510-RB 480..2253 17..1790 8870 100 Plus
CG7510-RB 4338 CG7510-RB 2278..3354 1791..2867 5385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17628860..17629237 2164..2541 1890 100 Plus
3L 28110227 3L 17628427..17628799 1791..2163 1865 100 Plus
3L 28110227 3L 17626692..17627024 637..969 1665 100 Plus
3L 28110227 3L 17626102..17626397 202..497 1465 99.7 Plus
3L 28110227 3L 17627314..17627554 1135..1375 1205 100 Plus
3L 28110227 3L 17629783..17629987 2663..2867 1025 100 Plus
3L 28110227 3L 17627611..17627804 1374..1567 970 100 Plus
3L 28110227 3L 17622303..17622493 17..207 955 100 Plus
3L 28110227 3L 17627087..17627254 970..1137 840 100 Plus
3L 28110227 3L 17627864..17628018 1567..1721 775 100 Plus
3L 28110227 3L 17626491..17626632 496..637 710 100 Plus
3L 28110227 3L 17629289..17629419 2538..2668 655 100 Plus
3L 28110227 3L 17628272..17628347 1715..1790 365 98.7 Plus
Blast to na_te.dros performed on 2014-11-28 01:43:00 has no hits.

BS15446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:59 Download gff for BS15446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 1..2850 17..2866 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:46 Download gff for BS15446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 478..3327 17..2866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:39 Download gff for BS15446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 480..3329 17..2866 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:23 Download gff for BS15446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 478..3327 17..2866 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:10 Download gff for BS15446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7510-RA 480..3329 17..2866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:10 Download gff for BS15446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17627865..17628018 1568..1721 100 -> Plus
3L 17628279..17628347 1722..1790 100 -> Plus
3L 17627613..17627804 1376..1567 100 -> Plus
3L 17622303..17622493 17..207 100 -> Plus
3L 17626108..17626397 208..497 100 -> Plus
3L 17626493..17626632 498..637 100 -> Plus
3L 17626693..17627024 638..969 100 -> Plus
3L 17627087..17627252 970..1135 100 -> Plus
3L 17627315..17627554 1136..1375 100 -> Plus
3L 17628427..17628799 1791..2163 100 -> Plus
3L 17628860..17629234 2164..2538 100 -> Plus
3L 17629290..17629415 2539..2664 100 -> Plus
3L 17629785..17629986 2665..2866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:39 Download gff for BS15446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17615403..17615593 17..207 100 -> Plus
arm_3L 17619208..17619497 208..497 100 -> Plus
arm_3L 17619593..17619732 498..637 100 -> Plus
arm_3L 17619793..17620124 638..969 100 -> Plus
arm_3L 17620187..17620352 970..1135 100 -> Plus
arm_3L 17620415..17620654 1136..1375 100 -> Plus
arm_3L 17620713..17620904 1376..1567 100 -> Plus
arm_3L 17620965..17621118 1568..1721 100 -> Plus
arm_3L 17621379..17621447 1722..1790 100 -> Plus
arm_3L 17621527..17621899 1791..2163 100 -> Plus
arm_3L 17621960..17622334 2164..2538 100 -> Plus
arm_3L 17622390..17622515 2539..2664 100 -> Plus
arm_3L 17622885..17623086 2665..2866 100   Plus

BS15446.pep Sequence

Translation from 16 to 2865

> BS15446.pep
MDSSMYYASQRIAASTEANVRVITSTMASSLANGTATPRADDGGVSMNNF
YPALVQCFGIIICGYIAGRFKIISNAETKGLGTFVGTFALPSLIFLSLVE
LNWSAVNWSFLLAMLVSKAVVFFAVLIISLLVARPLNYARGGLMAIFCTQ
SNDFAIGYPIVMALYKDVHPEYASYLYLMAPISLAILNPVGLVLMEISKI
IKNKEDVTRNPPLCPETCPAEQMSKRNRCLGERSILVFNTLIALFFNPLL
LMTLLGVAGGFLFPNGLPEMVSSTLRVLGQSFSATALFLLGLKIVGGTGS
ERKSIGFLLPGVLILVKILVLPLVIRQTVNIMQSGQNFNDTTELSTFGFL
YGTFPAAPGAFVIATQYNMEVELVARSMVFCTFISAPLMFISAKMISLTN
LKPLDYLHELDAFSFDISVAGAAACCIMLALLIVTKRFKRMPQRITFCLV
LSQLMCCIGVILWSKMEHVHRWPLYLQFLLFNIGTYSTRLWTGLLAISLL
FLQCRSLCFVLKLWPYMLVFAWGVPAVLSALLIAFDSNVMSGEKHNPSFQ
YGNAQAAISVFMLVMCFIVTVGCLVLHQRYKKRYEKYMTYSQSSDLHSTI
STTNLLSHTDQSSIRQSVRTASYSSSSDDEEMIPTAAGLPTSRSNGAASG
GAGSGGGGCGSGNGTCCSGGAPVSNSSTTSTVVVDIEDLLNRTRQRASGA
NNKDLNKIESAPATEEIRNQMCSSSFNCGPSTSRQSCQTIIERYEDQNRR
GLEPLEHPSDADEHQTLKHTVLLITLLCSMFVGLAVSIWTLVMEGMSGIY
LELSFLDAFLNFGQGLIVLAVFITDIGELLMPVVKLWRKLWYGANVVSLP
HWSNVRPETKHICEQFRNHHLENCKKDIAKDRRWRIRVYRRVFYGTEFVS
WLIEVGLSKDRMEAVHYARHLVDGRVLRHINNVYHFEDKLLLYNFCSRI*

BS15446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7510-PA 949 CG7510-PA 1..949 1..949 4896 100 Plus
CG7510-PB 957 CG7510-PB 1..957 1..949 4874 99.1 Plus