Clone BS15450 Report

Search the DGRC for BS15450

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptcg-RA
Protein status:BS15450.pep: full length peptide match
Sequenced Size:2048

Clone Sequence Records

BS15450.3prime Sequence

867 bp (803 high quality bases) assembled on 2006-12-21

> BS15450.3prime
ATGGTCTAGAAAGCTTCTACCATACCTGTTGCTGCGATATGGCTGGCTTC
GTCTCCAGATGCTGGCGCTGGTGCAGCATCAGGTGGTTCTTCTGGAAGAA
GGCCTTGCCGCACTCGCACACGTGTGTGCGCACCGTGCAGCCGCCGTTCG
GGTGACGCCGATTGTGCTGCATGAGACCGTGCTTGGCGGCGAATCCCTTG
CCGCAGCTGGCGCAGAAATGCGACTTCGGTTTGTTGGCCGGCGCCACGGA
GACAACATGTTGCTGCTGCTGTTGCTGCTGTTGTTGCTGTTGCTGCTGCT
GTTGGGCCACATGCTGCAGATGCTGCTGCTGACCATGCACGGGCATCGTA
GGCACAGCGGTGACCACGGCTTGTGGATGGGTCGAGTTGGCGGCCTGCAC
CAGCGTGGTCTGCGACATCACCTGACCGGTGGACGATATGATCTGCACTG
GCACAGGGCTCTGGCCCACCAGATTCGGATTGGCCGTGACCACGGTGCCC
GGATTCAGGCTAGCCGTGCTCAAGAAGTGACCCGGCAGCGCGGCTGTCAA
GGCACACAGATCTGTCATTAGGCTCTTGTCGCCAGTGTGAAGGCGCAAGT
GAAGTGCCAAGGCTTCTCGGCTATTAAAAGCACTGCCGCATTCGCGGCAC
ACAAACTGCGGTCGTGCCACGCCATTGGCATCCGTGGTGGATACAGTCAG
CAACGTAGAGTTGCCCGGATTGCTCACCACGGTTATGGTCTGCGGATGCG
TTTGCTGTCCAGCTTGGTGATGATGGGCCTGCTGTAGCTGTTGATTTGCT
ATGATGGTGGCACTGCTCGTGTTGGGATTGACGCCATTGTGCGCCGTCCT
CACATGCTGATGCAGTT

BS15450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8367-PD 2016 cg-RD 1166..2012 867..21 4235 100 Minus
CG8367-PB 2319 cg-RB 1469..2315 867..21 4235 100 Minus
CG8367-PC 1890 cg-RC 1040..1886 867..21 4235 100 Minus
CG8367-PA 2016 cg-RA 1166..2012 867..21 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
cg-RA 2881 CG8367-RA 1743..2594 867..16 4245 99.9 Minus
cg-RC 2866 CG8367-RC 1728..2579 867..16 4245 99.9 Minus
cg-RB 3361 CG8367-RB 2223..3074 867..16 4245 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14179312..14179941 645..16 3135 99.8 Minus
2R 25286936 2R 14179109..14179254 790..645 730 100 Minus
2R 25286936 2R 14178962..14179041 867..788 400 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:32:00 has no hits.

BS15450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:27:15 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:19 Download gff for BS15450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8367-PA 1166..2016 17..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:02:58 Download gff for BS15450.3prime
Subject Subject Range Query Range Percent Splice Strand
cg-RB 2223..3076 12..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:06:15 Download gff for BS15450.3prime
Subject Subject Range Query Range Percent Splice Strand
cg-RB 2223..3076 12..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:06:15 Download gff for BS15450.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14178962..14179041 788..867 100 -> Minus
2R 14179112..14179254 645..787 100 -> Minus
2R 14179313..14179943 12..644 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:02:58 Download gff for BS15450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10066467..10066546 788..867 100 -> Minus
arm_2R 10066617..10066759 645..787 100 -> Minus
arm_2R 10066818..10067448 12..644 99   Minus

BS15450.5prime Sequence

907 bp (818 high quality bases) assembled on 2006-12-21

> BS15450.5prime
GAAGTTATCACTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCT
ATACCTGGGGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTG
GAGATATCGCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTA
TCTACTATCGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCC
TTACAGCTGGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAAC
GATCCTTCATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGC
ATCGACGGTGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCG
ACAAGAACTGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTC
ATACAAGGACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCT
AAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGG
AATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCG
TACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGAC
AACCCACGCACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATT
GCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTT
CACTCCACGGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCAC
CCTCAAGCACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGAC
CATTCGTCTGCCAGGAGTGTGGACGCGCATTTCCGCTTAAGCGACACCTG
GTCACGCACAGCAAGTTCCACGCCGGCGAACGACCATATGTATGCGAGGA
ATGTGGT

BS15450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8367-PD 2016 cg-RD 1..891 17..907 4455 100 Plus
CG8367-PA 2016 cg-RA 1..891 17..907 4455 100 Plus
CG8367-PC 1890 cg-RC 1..765 143..907 3825 100 Plus
CG8367-PB 2319 cg-RB 647..1194 360..907 2740 100 Plus
CG8367-PB 2319 cg-RB 1..343 17..359 1715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
cg-RA 2881 CG8367-RA 578..1468 17..907 4455 100 Plus
cg-RD 3058 CG8367-RD 755..1645 17..907 4455 100 Plus
cg-RC 2866 CG8367-RC 578..1453 32..907 4380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14178267..14178555 619..907 1445 100 Plus
2R 25286936 2R 14177861..14178021 360..520 805 100 Plus
2R 25286936 2R 14176405..14176542 142..279 690 100 Plus
2R 25286936 2R 14174447..14174572 17..142 630 100 Plus
2R 25286936 2R 14178098..14178203 521..626 530 100 Plus
2R 25286936 2R 14176610..14176693 278..361 420 100 Plus
Blast to na_te.dros performed on 2015-01-30 12:35:05 has no hits.

BS15450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:27:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:21 Download gff for BS15450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8367-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:39:11 Download gff for BS15450.5prime
Subject Subject Range Query Range Percent Splice Strand
cg-RD 755..1645 17..907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:03:17 Download gff for BS15450.5prime
Subject Subject Range Query Range Percent Splice Strand
cg-RD 755..1645 17..907 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:03:17 Download gff for BS15450.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14178098..14178200 521..623 100 -> Plus
2R 14174447..14174572 17..142 100 -> Plus
2R 14176406..14176542 143..279 100 -> Plus
2R 14176612..14176691 280..359 100 -> Plus
2R 14177861..14178021 360..520 100 -> Plus
2R 14178272..14178555 624..907 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:39:11 Download gff for BS15450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10063911..10064047 143..279 100 -> Plus
arm_2R 10064117..10064196 280..359 100 -> Plus
arm_2R 10061952..10062077 17..142 100 -> Plus
arm_2R 10065366..10065526 360..520 100 -> Plus
arm_2R 10065603..10065705 521..623 100 -> Plus
arm_2R 10065777..10066060 624..907 100   Plus

BS15450.complete Sequence

2048 bp assembled on 2008-08-15

GenBank Submission: KX805318

> BS15450.complete
GAAGTTATCACTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCT
ATACCTGGGGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTG
GAGATATCGCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTA
TCTACTATCGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCC
TTACAGCTGGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAAC
GATCCTTCATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGC
ATCGACGGTGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCG
ACAAGAACTGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTC
ATACAAGGACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCT
AAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGG
AATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCG
TACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGAC
AACCCACGCACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATT
GCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTT
CACTCCACGGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCAC
CCTCAAGCACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGAC
CATTCGTCTGCCAGGAGTGTGGACGCGCATTTCCGCTTAAGCGACACCTG
GTCACGCACAGCAAGTTCCACGCCGGCGAACGACCATATGTATGCGAGGA
ATGTGGTGAGAGCTTTGCGCAGGAAAACCACCTGATTATGCACTCTCGCT
TCCACGGTTCATTGAATCCATTTGTTTGCGCCGAATGCGGAGCTTCGTTT
CCACGCAAGTTTCAATTGGTTAACCACGGACGTATTCACGGCAAGATTCC
CCATTCGTGCACCGTATGCGGCAAAGAGTTTCTACAAAAGCGAACGCTAG
TTTCCCACATGAGGCGGGTGCATACCGGCGAGCAGGCGCATCCCTGCGTC
AGCTGTGGCGAGGGATTCCTCACCAAGGCCGAACTGCATCAGCATGTGAG
GACGGCGCACAATGGCGTCAATCCCAACACGAGCAGTGCCACCATCATAG
CAAATCAACAGCTACAGCAGGCCCATCATCACCAAGCTGGACAGCAAACG
CATCCGCAGACCATAACCGTGGTGAGCAATCCGGGCAACTCTACGTTGCT
GACTGTATCCACCACGGATGCCAATGGCGTGGCACGACCGCAGTTTGTGT
GCCGCGAATGCGGCAGTGCTTTTAATAGCCGAGAAGCCTTGGCACTTCAC
TTGCGCCTTCACACTGGCGACAAGAGCCTAATGACAGATCTGTGTGCCTT
GACAGCCGCGCTGCCGGGTCACTTCTTGAGCACGGCTAGCCTGAATCCGG
GCACCGTGGTCACGGCCAATCCGAATCTGGTGGGCCAGAGCCCTGTGCCA
GTGCAGATCATATCGTCCACCGGTCAGGTGATGTCGCAGACCACGCTGGT
GCAGGCCGCCAACTCGACCCATCCACAAGCCGTGGTCACCGCTGTGCCTA
CGATGCCCGTGCATGGTCAGCAGCAGCATCTGCAGCATGTGGCCCAACAG
CAGCAGCAACAGCAACAACAGCAGCAACAGCAGCAGCAACATGTTGTCTC
CGTGGCGCCGGCCAACAAACCGAAGTCGCATTTCTGCGCCAGCTGCGGCA
AGGGATTCGCCGCCAAGCACGGTCTCATGCAGCACAATCGGCGTCACCCG
AACGGCGGCTGCACGGTGCGCACACACGTGTGCGAGTGCGGCAAGGCCTT
CTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATCTGGAGACGA
AGCCAGCCATATCGCAGCAACAGGTATGCTAGAAGCTTTCTAGACCAT

BS15450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
cg-RA 2016 CG8367-PA 1..2016 17..2032 10080 100 Plus
cg-RD 2016 CG8367-PD 1..2016 17..2032 10080 100 Plus
cg-RN 2061 CG8367-PN 1..2034 17..2023 9660 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
cg-RA 2881 CG8367-RA 578..2594 17..2033 10085 100 Plus
cg-RD 3058 CG8367-RD 755..2771 17..2033 10085 100 Plus
cg-RC 2866 CG8367-RC 578..2579 32..2033 10010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14179312..14179941 1404..2033 3150 100 Plus
2R 25286936 2R 14178267..14178596 619..948 1650 100 Plus
2R 25286936 2R 14178664..14178830 948..1114 835 100 Plus
2R 25286936 2R 14177861..14178021 360..520 805 100 Plus
2R 25286936 2R 14178892..14179041 1112..1261 750 100 Plus
2R 25286936 2R 14179109..14179254 1259..1404 730 100 Plus
2R 25286936 2R 14176405..14176542 142..279 690 100 Plus
2R 25286936 2R 14174447..14174572 17..142 630 100 Plus
2R 25286936 2R 14178098..14178203 521..626 530 100 Plus
2R 25286936 2R 14176610..14176693 278..361 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:35:25 has no hits.

BS15450.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:52 Download gff for BS15450.complete
Subject Subject Range Query Range Percent Splice Strand
cg-RA 593..2611 17..2037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:10 Download gff for BS15450.complete
Subject Subject Range Query Range Percent Splice Strand
cg-RD 755..2770 17..2032 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:04 Download gff for BS15450.complete
Subject Subject Range Query Range Percent Splice Strand
cg-RA 593..2608 17..2032 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:48 Download gff for BS15450.complete
Subject Subject Range Query Range Percent Splice Strand
cg-RD 755..2770 17..2032 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:48 Download gff for BS15450.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14178665..14178829 949..1113 100 -> Plus
2R 14178894..14179041 1114..1261 100 -> Plus
2R 14179112..14179254 1262..1404 100 -> Plus
2R 14174447..14174572 17..142 100 -> Plus
2R 14176406..14176542 143..279 100 -> Plus
2R 14176612..14176691 280..359 100 -> Plus
2R 14177861..14178021 360..520 100 -> Plus
2R 14178098..14178200 521..623 100 -> Plus
2R 14178272..14178596 624..948 100 -> Plus
2R 14179313..14179940 1405..2032 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:10 Download gff for BS15450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10065603..10065705 521..623 100 -> Plus
arm_2R 10061952..10062077 17..142 100 -> Plus
arm_2R 10063911..10064047 143..279 100 -> Plus
arm_2R 10064117..10064196 280..359 100 -> Plus
arm_2R 10065366..10065526 360..520 100 -> Plus
arm_2R 10065777..10066101 624..948 100 -> Plus
arm_2R 10066170..10066334 949..1113 100 -> Plus
arm_2R 10066399..10066546 1114..1261 100 -> Plus
arm_2R 10066617..10066759 1262..1404 100 -> Plus
arm_2R 10066818..10067445 1405..2032 100   Plus

BS15450.pep Sequence

Translation from 16 to 2031

> BS15450.pep
MCAAQNPPPFGYTWGFADNGNRAAESVLEISPNINYTVSGESMPYLLSTD
GSLAVQKDVKGLTAGGKNNVVRRMFVVNDPSFPPGTQRVITAGGASTVVK
KQDNNQQVLSLDKNCDILPGISVQVQKVIQGLEDNEDSQGEAPNLKLEPG
TLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARV
HTGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHL
LTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESF
AQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTV
CGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNG
VNPNTSSATIIANQQLQQAHHHQAGQQTHPQTITVVSNPGNSTLLTVSTT
DANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALP
GHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANS
THPQAVVTAVPTMPVHGQQQHLQHVAQQQQQQQQQQQQQQQHVVSVAPAN
KPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNH
LMLHQRQHLETKPAISQQQVC*

BS15450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
cg-PA 671 CG8367-PA 1..671 1..671 3613 100 Plus
cg-PD 671 CG8367-PD 1..671 1..671 3613 100 Plus
cg-PN 686 CG8367-PN 1..679 1..670 3559 98.5 Plus
cg-PK 665 CG8367-PK 1..665 1..671 3521 98.4 Plus
cg-PC 629 CG8367-PC 1..629 43..671 3383 100 Plus