Clone Sequence Records
BS15450.3prime Sequence
867 bp (803 high quality bases) assembled on 2006-12-21
> BS15450.3prime
ATGGTCTAGAAAGCTTCTACCATACCTGTTGCTGCGATATGGCTGGCTTC
GTCTCCAGATGCTGGCGCTGGTGCAGCATCAGGTGGTTCTTCTGGAAGAA
GGCCTTGCCGCACTCGCACACGTGTGTGCGCACCGTGCAGCCGCCGTTCG
GGTGACGCCGATTGTGCTGCATGAGACCGTGCTTGGCGGCGAATCCCTTG
CCGCAGCTGGCGCAGAAATGCGACTTCGGTTTGTTGGCCGGCGCCACGGA
GACAACATGTTGCTGCTGCTGTTGCTGCTGTTGTTGCTGTTGCTGCTGCT
GTTGGGCCACATGCTGCAGATGCTGCTGCTGACCATGCACGGGCATCGTA
GGCACAGCGGTGACCACGGCTTGTGGATGGGTCGAGTTGGCGGCCTGCAC
CAGCGTGGTCTGCGACATCACCTGACCGGTGGACGATATGATCTGCACTG
GCACAGGGCTCTGGCCCACCAGATTCGGATTGGCCGTGACCACGGTGCCC
GGATTCAGGCTAGCCGTGCTCAAGAAGTGACCCGGCAGCGCGGCTGTCAA
GGCACACAGATCTGTCATTAGGCTCTTGTCGCCAGTGTGAAGGCGCAAGT
GAAGTGCCAAGGCTTCTCGGCTATTAAAAGCACTGCCGCATTCGCGGCAC
ACAAACTGCGGTCGTGCCACGCCATTGGCATCCGTGGTGGATACAGTCAG
CAACGTAGAGTTGCCCGGATTGCTCACCACGGTTATGGTCTGCGGATGCG
TTTGCTGTCCAGCTTGGTGATGATGGGCCTGCTGTAGCTGTTGATTTGCT
ATGATGGTGGCACTGCTCGTGTTGGGATTGACGCCATTGTGCGCCGTCCT
CACATGCTGATGCAGTT
BS15450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8367-PD | 2016 | cg-RD | 1166..2012 | 867..21 | 4235 | 100 | Minus |
CG8367-PB | 2319 | cg-RB | 1469..2315 | 867..21 | 4235 | 100 | Minus |
CG8367-PC | 1890 | cg-RC | 1040..1886 | 867..21 | 4235 | 100 | Minus |
CG8367-PA | 2016 | cg-RA | 1166..2012 | 867..21 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-RA | 2881 | CG8367-RA | 1743..2594 | 867..16 | 4245 | 99.9 | Minus |
cg-RC | 2866 | CG8367-RC | 1728..2579 | 867..16 | 4245 | 99.9 | Minus |
cg-RB | 3361 | CG8367-RB | 2223..3074 | 867..16 | 4245 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14179312..14179941 | 645..16 | 3135 | 99.8 | Minus |
2R | 25286936 | 2R | 14179109..14179254 | 790..645 | 730 | 100 | Minus |
2R | 25286936 | 2R | 14178962..14179041 | 867..788 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:32:00 has no hits.
BS15450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:27:15 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:19 Download gff for
BS15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8367-PA | 1166..2016 | 17..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:02:58 Download gff for
BS15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RB | 2223..3076 | 12..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:06:15 Download gff for
BS15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RB | 2223..3076 | 12..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:06:15 Download gff for
BS15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14178962..14179041 | 788..867 | 100 | -> | Minus |
2R | 14179112..14179254 | 645..787 | 100 | -> | Minus |
2R | 14179313..14179943 | 12..644 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:02:58 Download gff for
BS15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10066467..10066546 | 788..867 | 100 | -> | Minus |
arm_2R | 10066617..10066759 | 645..787 | 100 | -> | Minus |
arm_2R | 10066818..10067448 | 12..644 | 99 | | Minus |
BS15450.5prime Sequence
907 bp (818 high quality bases) assembled on 2006-12-21
> BS15450.5prime
GAAGTTATCACTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCT
ATACCTGGGGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTG
GAGATATCGCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTA
TCTACTATCGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCC
TTACAGCTGGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAAC
GATCCTTCATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGC
ATCGACGGTGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCG
ACAAGAACTGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTC
ATACAAGGACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCT
AAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGG
AATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCG
TACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGAC
AACCCACGCACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATT
GCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTT
CACTCCACGGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCAC
CCTCAAGCACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGAC
CATTCGTCTGCCAGGAGTGTGGACGCGCATTTCCGCTTAAGCGACACCTG
GTCACGCACAGCAAGTTCCACGCCGGCGAACGACCATATGTATGCGAGGA
ATGTGGT
BS15450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8367-PD | 2016 | cg-RD | 1..891 | 17..907 | 4455 | 100 | Plus |
CG8367-PA | 2016 | cg-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
CG8367-PC | 1890 | cg-RC | 1..765 | 143..907 | 3825 | 100 | Plus |
CG8367-PB | 2319 | cg-RB | 647..1194 | 360..907 | 2740 | 100 | Plus |
CG8367-PB | 2319 | cg-RB | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-RA | 2881 | CG8367-RA | 578..1468 | 17..907 | 4455 | 100 | Plus |
cg-RD | 3058 | CG8367-RD | 755..1645 | 17..907 | 4455 | 100 | Plus |
cg-RC | 2866 | CG8367-RC | 578..1453 | 32..907 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14178267..14178555 | 619..907 | 1445 | 100 | Plus |
2R | 25286936 | 2R | 14177861..14178021 | 360..520 | 805 | 100 | Plus |
2R | 25286936 | 2R | 14176405..14176542 | 142..279 | 690 | 100 | Plus |
2R | 25286936 | 2R | 14174447..14174572 | 17..142 | 630 | 100 | Plus |
2R | 25286936 | 2R | 14178098..14178203 | 521..626 | 530 | 100 | Plus |
2R | 25286936 | 2R | 14176610..14176693 | 278..361 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 12:35:05 has no hits.
BS15450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:27:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:21 Download gff for
BS15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8367-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:39:11 Download gff for
BS15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RD | 755..1645 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:03:17 Download gff for
BS15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RD | 755..1645 | 17..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:03:17 Download gff for
BS15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14178098..14178200 | 521..623 | 100 | -> | Plus |
2R | 14174447..14174572 | 17..142 | 100 | -> | Plus |
2R | 14176406..14176542 | 143..279 | 100 | -> | Plus |
2R | 14176612..14176691 | 280..359 | 100 | -> | Plus |
2R | 14177861..14178021 | 360..520 | 100 | -> | Plus |
2R | 14178272..14178555 | 624..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:39:11 Download gff for
BS15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10063911..10064047 | 143..279 | 100 | -> | Plus |
arm_2R | 10064117..10064196 | 280..359 | 100 | -> | Plus |
arm_2R | 10061952..10062077 | 17..142 | 100 | -> | Plus |
arm_2R | 10065366..10065526 | 360..520 | 100 | -> | Plus |
arm_2R | 10065603..10065705 | 521..623 | 100 | -> | Plus |
arm_2R | 10065777..10066060 | 624..907 | 100 | | Plus |
BS15450.complete Sequence
2048 bp assembled on 2008-08-15
GenBank Submission: KX805318
> BS15450.complete
GAAGTTATCACTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCT
ATACCTGGGGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTG
GAGATATCGCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTA
TCTACTATCGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCC
TTACAGCTGGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAAC
GATCCTTCATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGC
ATCGACGGTGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCG
ACAAGAACTGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTC
ATACAAGGACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCT
AAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGG
AATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCG
TACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGAC
AACCCACGCACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATT
GCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTT
CACTCCACGGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCAC
CCTCAAGCACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGAC
CATTCGTCTGCCAGGAGTGTGGACGCGCATTTCCGCTTAAGCGACACCTG
GTCACGCACAGCAAGTTCCACGCCGGCGAACGACCATATGTATGCGAGGA
ATGTGGTGAGAGCTTTGCGCAGGAAAACCACCTGATTATGCACTCTCGCT
TCCACGGTTCATTGAATCCATTTGTTTGCGCCGAATGCGGAGCTTCGTTT
CCACGCAAGTTTCAATTGGTTAACCACGGACGTATTCACGGCAAGATTCC
CCATTCGTGCACCGTATGCGGCAAAGAGTTTCTACAAAAGCGAACGCTAG
TTTCCCACATGAGGCGGGTGCATACCGGCGAGCAGGCGCATCCCTGCGTC
AGCTGTGGCGAGGGATTCCTCACCAAGGCCGAACTGCATCAGCATGTGAG
GACGGCGCACAATGGCGTCAATCCCAACACGAGCAGTGCCACCATCATAG
CAAATCAACAGCTACAGCAGGCCCATCATCACCAAGCTGGACAGCAAACG
CATCCGCAGACCATAACCGTGGTGAGCAATCCGGGCAACTCTACGTTGCT
GACTGTATCCACCACGGATGCCAATGGCGTGGCACGACCGCAGTTTGTGT
GCCGCGAATGCGGCAGTGCTTTTAATAGCCGAGAAGCCTTGGCACTTCAC
TTGCGCCTTCACACTGGCGACAAGAGCCTAATGACAGATCTGTGTGCCTT
GACAGCCGCGCTGCCGGGTCACTTCTTGAGCACGGCTAGCCTGAATCCGG
GCACCGTGGTCACGGCCAATCCGAATCTGGTGGGCCAGAGCCCTGTGCCA
GTGCAGATCATATCGTCCACCGGTCAGGTGATGTCGCAGACCACGCTGGT
GCAGGCCGCCAACTCGACCCATCCACAAGCCGTGGTCACCGCTGTGCCTA
CGATGCCCGTGCATGGTCAGCAGCAGCATCTGCAGCATGTGGCCCAACAG
CAGCAGCAACAGCAACAACAGCAGCAACAGCAGCAGCAACATGTTGTCTC
CGTGGCGCCGGCCAACAAACCGAAGTCGCATTTCTGCGCCAGCTGCGGCA
AGGGATTCGCCGCCAAGCACGGTCTCATGCAGCACAATCGGCGTCACCCG
AACGGCGGCTGCACGGTGCGCACACACGTGTGCGAGTGCGGCAAGGCCTT
CTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATCTGGAGACGA
AGCCAGCCATATCGCAGCAACAGGTATGCTAGAAGCTTTCTAGACCAT
BS15450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-RA | 2016 | CG8367-PA | 1..2016 | 17..2032 | 10080 | 100 | Plus |
cg-RD | 2016 | CG8367-PD | 1..2016 | 17..2032 | 10080 | 100 | Plus |
cg-RN | 2061 | CG8367-PN | 1..2034 | 17..2023 | 9660 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-RA | 2881 | CG8367-RA | 578..2594 | 17..2033 | 10085 | 100 | Plus |
cg-RD | 3058 | CG8367-RD | 755..2771 | 17..2033 | 10085 | 100 | Plus |
cg-RC | 2866 | CG8367-RC | 578..2579 | 32..2033 | 10010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14179312..14179941 | 1404..2033 | 3150 | 100 | Plus |
2R | 25286936 | 2R | 14178267..14178596 | 619..948 | 1650 | 100 | Plus |
2R | 25286936 | 2R | 14178664..14178830 | 948..1114 | 835 | 100 | Plus |
2R | 25286936 | 2R | 14177861..14178021 | 360..520 | 805 | 100 | Plus |
2R | 25286936 | 2R | 14178892..14179041 | 1112..1261 | 750 | 100 | Plus |
2R | 25286936 | 2R | 14179109..14179254 | 1259..1404 | 730 | 100 | Plus |
2R | 25286936 | 2R | 14176405..14176542 | 142..279 | 690 | 100 | Plus |
2R | 25286936 | 2R | 14174447..14174572 | 17..142 | 630 | 100 | Plus |
2R | 25286936 | 2R | 14178098..14178203 | 521..626 | 530 | 100 | Plus |
2R | 25286936 | 2R | 14176610..14176693 | 278..361 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:25 has no hits.
BS15450.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:52 Download gff for
BS15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RA | 593..2611 | 17..2037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:10 Download gff for
BS15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RD | 755..2770 | 17..2032 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:04 Download gff for
BS15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RA | 593..2608 | 17..2032 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:48 Download gff for
BS15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RD | 755..2770 | 17..2032 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:48 Download gff for
BS15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14178665..14178829 | 949..1113 | 100 | -> | Plus |
2R | 14178894..14179041 | 1114..1261 | 100 | -> | Plus |
2R | 14179112..14179254 | 1262..1404 | 100 | -> | Plus |
2R | 14174447..14174572 | 17..142 | 100 | -> | Plus |
2R | 14176406..14176542 | 143..279 | 100 | -> | Plus |
2R | 14176612..14176691 | 280..359 | 100 | -> | Plus |
2R | 14177861..14178021 | 360..520 | 100 | -> | Plus |
2R | 14178098..14178200 | 521..623 | 100 | -> | Plus |
2R | 14178272..14178596 | 624..948 | 100 | -> | Plus |
2R | 14179313..14179940 | 1405..2032 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:10 Download gff for
BS15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10065603..10065705 | 521..623 | 100 | -> | Plus |
arm_2R | 10061952..10062077 | 17..142 | 100 | -> | Plus |
arm_2R | 10063911..10064047 | 143..279 | 100 | -> | Plus |
arm_2R | 10064117..10064196 | 280..359 | 100 | -> | Plus |
arm_2R | 10065366..10065526 | 360..520 | 100 | -> | Plus |
arm_2R | 10065777..10066101 | 624..948 | 100 | -> | Plus |
arm_2R | 10066170..10066334 | 949..1113 | 100 | -> | Plus |
arm_2R | 10066399..10066546 | 1114..1261 | 100 | -> | Plus |
arm_2R | 10066617..10066759 | 1262..1404 | 100 | -> | Plus |
arm_2R | 10066818..10067445 | 1405..2032 | 100 | | Plus |
BS15450.pep Sequence
Translation from 16 to 2031
> BS15450.pep
MCAAQNPPPFGYTWGFADNGNRAAESVLEISPNINYTVSGESMPYLLSTD
GSLAVQKDVKGLTAGGKNNVVRRMFVVNDPSFPPGTQRVITAGGASTVVK
KQDNNQQVLSLDKNCDILPGISVQVQKVIQGLEDNEDSQGEAPNLKLEPG
TLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARV
HTGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHL
LTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESF
AQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTV
CGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNG
VNPNTSSATIIANQQLQQAHHHQAGQQTHPQTITVVSNPGNSTLLTVSTT
DANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALP
GHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANS
THPQAVVTAVPTMPVHGQQQHLQHVAQQQQQQQQQQQQQQQHVVSVAPAN
KPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNH
LMLHQRQHLETKPAISQQQVC*
BS15450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-PA | 671 | CG8367-PA | 1..671 | 1..671 | 3613 | 100 | Plus |
cg-PD | 671 | CG8367-PD | 1..671 | 1..671 | 3613 | 100 | Plus |
cg-PN | 686 | CG8367-PN | 1..679 | 1..670 | 3559 | 98.5 | Plus |
cg-PK | 665 | CG8367-PK | 1..665 | 1..671 | 3521 | 98.4 | Plus |
cg-PC | 629 | CG8367-PC | 1..629 | 43..671 | 3383 | 100 | Plus |