Clone Sequence Records
BS15453.complete Sequence
1013 bp assembled on 2010-02-09
GenBank Submission: KX803077
> BS15453.complete
GAAGTTATCCCTTTACATGTCCAGTGCGCTGACTCGCCTGTTGGAGCGCC
TGCCACTGAAAAAACAGACGGCGCAAAGCGGTATTCGTGTTTTTTCCAAC
CAGGAGCAGCGGCAAGAAATTGAGGATGATGAAGAATTCCGAGTGCTCAG
CCTGCGGACGGTGAAGCAGCAGATGCAGAAGCGCCAGCAGGTCCGTCGGG
ATCCCATCACACCGCCGCGCACTGGCCGCATGGCGGTGGATCAGGACTGG
ACGGCCGTTTGGCCAGGACCACGTTCGTTCCACCCGGCCAGTGTGCCTCT
GCCACTGCGGCAGGGATTCACGGAACGCGGAGCAGCAGCTCCGTCGAAGT
TCGCCAATGCAGAGCTGATGAAGATACCCAACTTTCTGCACTTGACACCG
CCGGCCATCCGTCAGCAATGCGAAGCCATCAAGAAGTTCTGCACGCCATG
GCCAAAGGGTCTGGAGACAGAGGCCAAGTGGCAGCGCCACTTCCCCCTGG
AGGTCACCACCACAGACTACTGCCAGAGTTTGCCCACGATCAGGAATCCG
GAGGCCAGGCGCGTCACCATTACCCTGAAGCTCTCTGACCTGAAGTTCGA
TGCGCACGCCAGGGATAAGTTCCTGCGCCTGGTGGGCGATCGCTACAACA
AGGACACGGACCTCGTTACCTTCGTCACGGATCGCTGTCCGCAGAAGAAG
CAGAACTACGACTACGCCCTGTATCTGCTCACCGCTTGCTATCACGAATC
CTTTGTCACCGAGCCGTGGGAGGCCACCAAATCGGAGGCCGACATGGAGG
TCTATCTGTTCGAGCGTAACCAGTCGAAGGTCTCCGCCGAGGGAATCCTC
AACTGGAACGCCAAGAAGGGTGCTCCAAAAGTGGTTCCCAGCAAGTCATT
CGCTGAATGCGTGGAGAAACTGATAAACGAAGGCGAAAACGAGTACAACT
TGGGCAAATACAAGGAGGAGGTCAAGAAGATGTTGAACATTGCCTAGAAG
CTTTCTAGACCAT
BS15453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS35-RA | 981 | CG2101-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS35-RA | 1144 | CG2101-RA | 114..1095 | 16..997 | 4910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2781192..2782056 | 133..997 | 4325 | 100 | Plus |
| 3L | 28110227 | 3L | 2781012..2781130 | 16..134 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:30:26 has no hits.
BS15453.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:48 Download gff for
BS15453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 93..1073 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:39 Download gff for
BS15453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 115..1095 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:48 Download gff for
BS15453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 93..1073 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:32 Download gff for
BS15453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 115..1095 | 17..997 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:32 Download gff for
BS15453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2781013..2781130 | 17..134 | 100 | -> | Plus |
| 3L | 2781194..2782056 | 135..997 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:39 Download gff for
BS15453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2781013..2781130 | 17..134 | 100 | -> | Plus |
| arm_3L | 2781194..2782056 | 135..997 | 100 | | Plus |
BS15453.3prime Sequence
673 bp (666 high quality bases) assembled on 2006-12-21
> BS15453.3prime
ANGGNNNANAAAGNTTNNACCCTATGGGAANATNNTNGTGANNANGTNNT
TGTATTTGGNAAAGTTGTATTNGTTTTGGATTTNGTTTATGAGTTTTTAA
AGGAATTAAGAGAATGATTTGGTGGGAAGAAATTTTGGAGGAGGGTTGTT
GGTGTTGAAGTTGAGGATTTGGTAGGGGGAGAGTTTNGAGTGGTTAAGAT
AGAAGAGATAGAAATNGATGTAGGTTTGGGATTTGGTGGNGTAGAAGGGG
TGGGTGAAAAAGGATTNGTGATAGNAAGNGGTGAGNAGATAGAGGGGGTA
GTNGTAGTTTTGGTTTTTGTGAGGATAGGGATGTGTGAAGAAGGTAATGA
GGTGAGTGGTATTGTTGTAGTGATNNGGGANGAGGAGTAGGAANTTATTT
GTGGTGTGGGTATNGAAGTTNAGGTNAGAGAGTTTGAGGGTAATGGTGAG
GNGNTTGGGATNAGGATTATTGATGGTGGGAAAANTATGGNAGTAGTGTG
TGGTGGTGATGTAAAGGGGGAAGTGGTGTTGTTATTTGGTTTGTGTTTTG
AGAGNNTTTGGGGATGGAGTGTAGAAATTNTTGATGGNTTTGNATTGGTG
ANGGATGGNNGGAGGTGTAAAGTGAAGAAAGTTGGGTATNTTNATNAGNT
NTGAATTGGAGAAATTNGAAGGA
BS15453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 19:21:13 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS35-RA | 1144 | CG2101-RA | 438..1061 | 673..50 | 763 | 73.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2781399..2782022 | 673..50 | 763 | 73.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:19:15 has no hits.
BS15453.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-13 21:27:43 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 17:51:23 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-10 17:51:23 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-13 21:27:43 has no hits.
BS15453.5prime Sequence
791 bp (613 high quality bases) assembled on 2006-12-21
> BS15453.5prime
GAAGTTATCCCTTTACATGTCCAGTGCGCTGACTCGCCTGTTGGAGCGCC
TGCCACTGAAAAAACAGACGGCGCAAAGCGGTATTCGTGTTTTTTCCAAC
CAGGAGCAGCGGCAAGAAATTGAGGATGATGAAGAATTCCGAGTGCTCAG
CCTGCGGACGGTGAAGCAGCAGATGCAGAAGCGCCAGCAGGTCCGTCGGG
ATCCCATCACACCGCCGCGCACTGGCCGCATGGCGGTGGATCAGGACTGG
ACGGCCGTTTGGCCAGGACCACGTTCGTTCCACCCGGCCAGTGTGCCTCT
GCCACTGCGGCAGGGATTCACGGAACGCGGAGCAGCAGCTCCGTCGAAGT
TCGCCAATGCAGAGCTGATGAAGATACCCAACTTTCTGCACTTGACACCG
CCGGCCATCCGTCAGCAATGCGAAGCCATCAAGAAGTTCTGCACGCCATG
GCCAAAGGGTCTGGAGACAGAGGCCAAGTGGCAGCGCCACTTCCCCCTGG
AGGTCACCACCACAGACTACTGCCAGAGTTTGCCCACGATCAAGAATCCG
GAGGCCAGGCGCGTCACCATTACCCTGAAGCTCTCTGACCTGAAGTTCGA
TGCGCACGCCAGGGATAAGTTCCTGCGCCTGGTGGGCGATCGCTACAACA
AGGACACGGACCTCGTTACCTTCGTCACGGATCGCTGTCCGCAGAAGAAG
CAGAACTACGACTACGCCCTGTATCTGCTCACCGCTTGCTATCACGAATC
CTTTGTCACCGAGCCGTGAGAGGCCACCAAATCGGAGGCCG
BS15453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2101-PA | 981 | mRpS35-RA | 1..775 | 17..791 | 3825 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS35-RA | 1144 | CG2101-RA | 114..889 | 16..791 | 3850 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2781192..2781850 | 133..791 | 3265 | 99.7 | Plus |
| 3L | 28110227 | 3L | 2781012..2781130 | 16..134 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:25:49 has no hits.
BS15453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:22 Download gff for
BS15453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2101-PA | 1..775 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:29 Download gff for
BS15453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2101-PA | 1..775 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:29:32 Download gff for
BS15453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 114..889 | 16..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:13 Download gff for
BS15453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS35-RA | 114..889 | 16..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:13 Download gff for
BS15453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2781012..2781130 | 16..134 | 100 | -> | Plus |
| 3L | 2781194..2781850 | 135..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:29:32 Download gff for
BS15453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2781012..2781130 | 16..134 | 100 | -> | Plus |
| arm_3L | 2781194..2781850 | 135..791 | 99 | | Plus |
BS15453.pep Sequence
Translation from 16 to 996
> BS15453.pep
MSSALTRLLERLPLKKQTAQSGIRVFSNQEQRQEIEDDEEFRVLSLRTVK
QQMQKRQQVRRDPITPPRTGRMAVDQDWTAVWPGPRSFHPASVPLPLRQG
FTERGAAAPSKFANAELMKIPNFLHLTPPAIRQQCEAIKKFCTPWPKGLE
TEAKWQRHFPLEVTTTDYCQSLPTIRNPEARRVTITLKLSDLKFDAHARD
KFLRLVGDRYNKDTDLVTFVTDRCPQKKQNYDYALYLLTACYHESFVTEP
WEATKSEADMEVYLFERNQSKVSAEGILNWNAKKGAPKVVPSKSFAECVE
KLINEGENEYNLGKYKEEVKKMLNIA*
BS15453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS35-PA | 326 | CG2101-PA | 1..326 | 1..326 | 1720 | 100 | Plus |
