Clone Sequence Records
BS15454.complete Sequence
1775 bp assembled on 2009-12-07
GenBank Submission: KX803296
> BS15454.complete
GAAGTTATCAGTCCCCATGCCGGTGGTGGAACTGAAAGTGGATCGCAACC
TGGTGTGCTCGGACTTTTCTGGCTACAAATTGGCATTCGATTCGGTGCCT
GTTCTTCGCCAGGAACTTGGATGTGATGCCTACGTGCTGGATCCGAGCAG
CAATCAGTTCTCGCTGCTGCACACGGAGCTCTTTGCCCGACACAATCACC
TGGTAGCCGATCCATGGATGCGCCACTGCAGCTACTTCTTTAACAAGCGC
CACCAGCTGGTGCAGTGCAACTACGATCTACAGACTGGACGCGCACGTGC
CCAGCGCGTTGTCCTCACGGTGGACTATAGGGATCAGGGCGATGGGGAAC
TACATCGGTCGGGTGACTACAACTACACCATAGTTTTCGTTTCGGAACGA
TTCTGTGTGATCTGCGACGGTATAACCAGTTACCATCTGGTGGACACCGG
CGACAGAACGCGCACCGATGTGCAGGAGTGGCAACGGATTACACGCTCGC
CGGTGAATAATAACAGTGGTCATCGCGGCTTTGCACTCTTCGATGCCCGG
CTGGATGTGCTGCAGGAACGTAAGCAGATCTCGCTGGTGGCCGGTCATGT
GGCACGCCGTGATGCAGTTGGCCAAGATCAGACGCACGTCTATTACATGG
ACTTGACCTGGGCACGGTGGACTCATTCGCCCACCAATGACGAGTGGTCA
TATAATATCTGTCAACGGCTGGAGACCACTGGCTCTGTGCACTACTGCGC
CTTTGAGCCTCGCGCCGAGTCCCTAGTCATTGCCAGCAACCGCGATGTTC
AGACTCCCGAGGAGCGTCGGGCAGCCGATGAAGCAGCCGCTGCCCGCTTG
AATTCCTCAGGTGATCACGATGGCCAGCTGGAAAATGGAGGTCCACCTAG
TTATAGCTGGTCCCAAACGGATAATAATGTGCTCATTCGTTTCAATGTTC
CTTCAACTGCATCCGCTAAAGAGTTTAACGTGAGCGGTTCTAAAACCACT
GTCGTTGTAAAGCATCTGGATGAGGTTATATTCGACGAAGAGTTATACGC
CAGTGTGGGAGATGATTTAAGTGCATTTAAGTTGGCTGAGAATGGCCTAG
AATTGTCACTAACCAAGGCGGAGATTCAGAACTGGCCACGTTTGTTCGCG
CAGAAGAAAGATGACGTAGCGGAGGAAGTACATCCAATGGAAGCTCCACC
ACTGCCCATTCCAAGTCTGCAGGATCCCGTTGAAGAATGTGACTTAATAT
CCGCTGATGAAGAAATGAAGATGGTACGCTTCAATTTGACCAGCGGGTGC
ATCACCCACACTATTTTTCTTGGTCCCCCGCCACTGGTGCTCACCACCAC
GCTGCGTCCTGGCTTTCCAGCCGCCTTTGCTACCCGCCAGGGCGTCGACG
CCTCCATATGGCTACAGATGTACCAGCCCAGTCGTCCAGATGAATGGAGT
GTCCGCCACGAGGGCCAGCTGCACGCCTTCGGCTACGTGCAGGCCTCCAA
GGTTGTGCGGAAATTCACCGTCTGCAGTCCGGATCTGGATTACGTAGCCA
TATGTGACCCTGTACGCTACGTTCTCGTCTACTTTCCGGCTAATAATTCG
GCTGATGGTCTCCGCAGGCGAAACGGACCTCCCGTCACCTTGGGTAAACA
AAAGCTCATCACCTTGGGCAACGAGATTGACGAGATTCTGGGCATAACCA
CGGCAAACAATCTGATCACCGTTCTCTCCAAGAAAGAACTGATACACCTG
CAGGTGTAGAAGCTTTCTAGACCAT
BS15454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-RA | 1743 | CG10347-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
| CG10347-RB | 1743 | CG10347-PB | 1..1743 | 17..1759 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-RA | 1978 | CG10347-RA | 114..1857 | 17..1760 | 8720 | 100 | Plus |
| CG10347-RB | 2024 | CG10347-RB | 117..1860 | 17..1760 | 8720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11853401..11854658 | 1274..17 | 6290 | 100 | Minus |
| X | 23542271 | X | 11852856..11853342 | 1760..1274 | 2435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:30:15 has no hits.
BS15454.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:49 Download gff for
BS15454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RA | 116..1858 | 17..1759 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:41 Download gff for
BS15454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 117..1859 | 17..1759 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:42 Download gff for
BS15454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RA | 116..1858 | 17..1759 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:50 Download gff for
BS15454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 117..1859 | 17..1759 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:50 Download gff for
BS15454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11852857..11853341 | 1275..1759 | 100 | <- | Minus |
| X | 11853401..11854658 | 17..1274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:41 Download gff for
BS15454.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11746890..11747374 | 1275..1759 | 100 | <- | Minus |
| arm_X | 11747434..11748691 | 17..1274 | 100 | | Minus |
BS15454.3prime Sequence
781 bp (778 high quality bases) assembled on 2006-12-21
> BS15454.3prime
ATGGTCTAGAAAGCTTCTACACCTGCAGGTGTATCAGTTCTTTCTTGGAG
AGAACGGTGATCAGATTGTTTGCCGTGGTTATGCCCAGAATCTCGTCAAT
CTCGTTGCCCAAGGTGATGAGCTTTTGTTTACCCAAGGTGACGGGAGGTC
CGTTTCGCCTGCGGAGACCATCAGCCGAATTATTAGCCGGAAAGTAGACG
AGAACGTAGCGTACAGGGTCACATATGGCTACGTAATCCAGATCCGGACT
GCAGACGGTGAATTTCCGCACAACCTTGGAGGCCTGCACGTAGCCGAAGG
CGTGCAGCTGGCCCTCGTGGCGGACACTCCATTCATCTGGACGACTGGGC
TGGTACATCTGTAGCCATATGGAGGCGTCGACGCCCTGGCGGGTAGCAAA
GGCGGCTGGAAAGCCAGGACGCAGCGTGGTGGTGAGCACCAGTGGCGGGG
GACCAAGAAAAATAGTGTGGGTGATGCACCCGCTGGTCAAATTGAAGCGT
ACCATCTTCATTTCTTCATCAGCGGATATTAAGTCACATTCTTCAACGGG
ATCCTGCAGACTTGGAATGGGCAGTGGTGGAGCTTCCATTGGATGTACTT
CCTCCGCTACGTCATCTTTCTTCTGCGCGAACAAACGTGGCCAGTTCTGA
ATCTCCGCCTTGGTTAGTGACAATTCTAGGCCATTCTCAGCCAACTTAAA
TGCACTTAAATCATCTCCCACACTGGCGTATAACTCTTCGTCGAATATAA
CCTCATCCAGATGCTTTACAACGACAGTGGT
BS15454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-PB | 1743 | CG10347-RB | 979..1743 | 781..17 | 3825 | 100 | Minus |
| CG10347-PA | 1743 | CG10347-RA | 979..1743 | 781..17 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-RA | 1978 | CG10347-RA | 1092..1857 | 781..16 | 3830 | 100 | Minus |
| CG10347-RB | 2024 | CG10347-RB | 1095..1860 | 781..16 | 3830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 00:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11852856..11853342 | 16..502 | 2435 | 100 | Plus |
| X | 23542271 | X | 11853401..11853680 | 502..781 | 1400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 00:09:56 has no hits.
BS15454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:23 Download gff for
BS15454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-PA | 979..1743 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:30 Download gff for
BS15454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-PA | 979..1743 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:35:14 Download gff for
BS15454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 1095..1868 | 9..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:35:34 Download gff for
BS15454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 1095..1868 | 9..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:35:34 Download gff for
BS15454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11852848..11853341 | 9..501 | 99 | <- | Plus |
| X | 11853401..11853680 | 502..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:35:14 Download gff for
BS15454.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11746881..11747374 | 9..501 | 99 | <- | Plus |
| arm_X | 11747434..11747713 | 502..781 | 100 | | Plus |
BS15454.5prime Sequence
829 bp (806 high quality bases) assembled on 2006-12-21
> BS15454.5prime
GAAGTTATCACTCGACATGCCGGTGGTGGAACTGAAAGTGGATCGCAACC
TGGTGTGCTCGGACTTTTCTGGCTACAAATTGGCATTCGATTCGGTGCCT
GTTCTTCGCCAGGAACTTGGATGTGATGCCTACGTGCTGGATCCGAGCAG
CAATCAGTTCTCGCTGCTGCACACGGAGCTCTTTGCCCGACACAATCACC
TGGTAGCCGATCCATGGATGCGCCACTGCAGCTACTTCTTTAACAAGCGC
CACCAGCTGGTGCAGTGCAACTACGATCTACAGACTGGACGCGCACGTGC
CCAGCGCGTTGTCCTCACGGTGGACTATAGGGATCAGGGCGATGGGGAAC
TACATCGGTCGGGTGACTACAACTACACCATAGTTTTCGTTTCGGAACGA
TTCTGTGTGATCTGCGACGGTATAACCAGTTACCATCTGGTGGACACCGG
CGACAGAACGCGCACCGATGTGCAGGAGTGGCAACGGATTACACGCTCGC
CGGTGAATAATAACAGTGGTCATCGCGGCTTTGCACTCTTCGATGCCCGG
CTGGATGTGCTGCAGGAACGTAAGCAGATCTCGCTGGTGGCCGGTCATGT
GGCACGCCGTGATGCAGTTGGCCAAGATCAGACGCACGTCTATTACATGG
ACTTGACCTGNGCACGGTGGACTCATTCGCCCACCAATGACGAGTGGTCA
TATAATATCTGTCAACGGCTGGAGACCACTGGCTCTGTGCACTACTGCGC
CTTTGAGCCTCGCGCCGAGTCCCTAGTCATTGCCAGCAACCGCGATGTTC
AGACTCCCGAGGAGCGTCGGGCAGCCGAT
BS15454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-PB | 1743 | CG10347-RB | 1..813 | 17..829 | 4046 | 99.8 | Plus |
| CG10347-PA | 1743 | CG10347-RA | 1..813 | 17..829 | 4046 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-RA | 1978 | CG10347-RA | 114..926 | 17..829 | 4054 | 99.9 | Plus |
| CG10347-RB | 2024 | CG10347-RB | 117..929 | 17..829 | 4054 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11853846..11854658 | 829..17 | 4054 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 03:27:47 has no hits.
BS15454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:24 Download gff for
BS15454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:32 Download gff for
BS15454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:48:09 Download gff for
BS15454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 117..929 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:21:05 Download gff for
BS15454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10347-RB | 117..929 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:21:05 Download gff for
BS15454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11853846..11854658 | 17..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:48:09 Download gff for
BS15454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11747879..11748691 | 17..829 | 99 | | Minus |
BS15454.pep Sequence
Translation from 16 to 1758
> BS15454.pep
MPVVELKVDRNLVCSDFSGYKLAFDSVPVLRQELGCDAYVLDPSSNQFSL
LHTELFARHNHLVADPWMRHCSYFFNKRHQLVQCNYDLQTGRARAQRVVL
TVDYRDQGDGELHRSGDYNYTIVFVSERFCVICDGITSYHLVDTGDRTRT
DVQEWQRITRSPVNNNSGHRGFALFDARLDVLQERKQISLVAGHVARRDA
VGQDQTHVYYMDLTWARWTHSPTNDEWSYNICQRLETTGSVHYCAFEPRA
ESLVIASNRDVQTPEERRAADEAAAARLNSSGDHDGQLENGGPPSYSWSQ
TDNNVLIRFNVPSTASAKEFNVSGSKTTVVVKHLDEVIFDEELYASVGDD
LSAFKLAENGLELSLTKAEIQNWPRLFAQKKDDVAEEVHPMEAPPLPIPS
LQDPVEECDLISADEEMKMVRFNLTSGCITHTIFLGPPPLVLTTTLRPGF
PAAFATRQGVDASIWLQMYQPSRPDEWSVRHEGQLHAFGYVQASKVVRKF
TVCSPDLDYVAICDPVRYVLVYFPANNSADGLRRRNGPPVTLGKQKLITL
GNEIDEILGITTANNLITVLSKKELIHLQV*
BS15454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10347-PA | 580 | CG10347-PA | 1..580 | 1..580 | 3071 | 100 | Plus |
| CG10347-PB | 580 | CG10347-PB | 1..580 | 1..580 | 3071 | 100 | Plus |
