Clone Sequence Records
BS15456.3prime Sequence
906 bp (770 high quality bases) assembled on 2006-12-21
> BS15456.3prime
ATGGTCTAGAAAGCTTTTATAATATTTTAGTTAGCCTCTCTAACGCACCT
GGCGGTCTCTCGGTGACCGTGAGCAATCCTGTTCGCCGCTGCCGCATATT
GGAGGAGGTAGTTGGCGCCTGGGACTGTGATCCTGCTCCTGATCCATGTG
CTACGGATAGATCCTCCGTGCAGCCCACCGTATGGCGCTGGGTGCCTCCA
CGCTTTTGCATATAGCTTTGCAGCTCCTCGTTGCATTCGCCGGTGGCATT
CTCCTGGCAGCATTGCATCTGCGCCACCGACTGTTCGTTGAGCGGCGACA
GCTCCTGCACTGCCAAAGGATCTGTGCCGCAATTCGGATTGATATAGTAC
CCGGCCGTGTCCATTTGCTGACCCTGAGCTGGACCCACAACGGTGCCCGT
GGCGGGATAGTAGATGTGAAGATTTGCCCCGCCGTCTGAGGCACGACGCC
CAAATGAGCTGGCTCCCATAACAACGGGCGGCTTGAGCAAATGCTGATCC
TTGATGGTGAGGTTGTGCAGGGGTTGGTTCTGCAGCATGGGCAGATTAAC
TGGATAGTAGGGAACTGGCTGAGTGGGATCGCTGCACTGCGGTGGACACT
TGAAGTCGATGGGCGGCACATTGGGATTAGCCAGCGCCTGCTCGTGGGCC
ACATCGCCGGGTCCCACTGTATGGCGTCTGGTATTCGCACCATTGACACC
TCCACCAGCGTGTGCACTCAAATGCTGCGCATTAACAGGGGGATCATTTG
ATCGCGCCAGGCATTCCAGCTCAAAATCACCATATTTCTCCAGATCCACG
GCGACATCGGAACAGCCAAAGCCCCAAGCTGAGCTGGANGCATTGGCATT
GCTCAACGGACTGAGTCGGTCCAGAGATTCCTGCTTGACGGGCTCCGAGC
GATCAC
BS15456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15072-PA | 2109 | CG15072-RA | 1222..2109 | 904..17 | 4371 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-RA | 2983 | CG42856-RA | 1873..2762 | 904..15 | 4409 | 99.7 | Minus |
Sik3-RF | 6011 | CG42856-RF | 2083..2939 | 904..48 | 4244 | 99.6 | Minus |
Sik3-RE | 6020 | CG42856-RE | 2083..2938 | 904..49 | 4239 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18700670..18700953 | 742..459 | 1420 | 100 | Minus |
2R | 25286936 | 2R | 18701018..18701261 | 459..216 | 1220 | 100 | Minus |
2R | 25286936 | 2R | 18701317..18701519 | 217..15 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 18700450..18700611 | 904..743 | 769 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:28:30 has no hits.
BS15456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:26 Download gff for
BS15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-PA | 1219..2109 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:34 Download gff for
BS15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-PA | 1219..2109 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:16:36 Download gff for
BS15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RA | 1870..2762 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:12 Download gff for
BS15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RA | 1870..2762 | 15..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:12 Download gff for
BS15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18701319..18701519 | 15..215 | 100 | | Minus |
2R | 18700670..18700952 | 460..742 | 100 | -> | Minus |
2R | 18701018..18701261 | 216..459 | 100 | -> | Minus |
2R | 18700447..18700611 | 743..906 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:16:36 Download gff for
BS15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14587952..14588116 | 743..906 | 97 | -> | Minus |
arm_2R | 14588175..14588457 | 460..742 | 100 | -> | Minus |
arm_2R | 14588523..14588766 | 216..459 | 100 | -> | Minus |
arm_2R | 14588824..14589024 | 15..215 | 100 | | Minus |
BS15456.5prime Sequence
773 bp (753 high quality bases) assembled on 2006-12-21
> BS15456.5prime
GAAGTTATCAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAG
CTCCTCCAACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGC
AAGATATCCGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAA
GACCATCGGCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTG
TGACCAAGACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAAC
GAGGAGTACCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCT
GCGGCATCCACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGA
TGATCTATCTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCAT
CTGGTGGCCAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCAC
CCAACTCGTCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATC
GCGATCTCAAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAG
CTTGCCGACTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAA
AACTTGGTGTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCT
TGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG
TACGCCTTGGTTTGTGGAGCATTACCTTTCGATGGATAGACTATCCTGGA
ACTGACAAGTCGCGTGGTGTTGG
BS15456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15072-PA | 2109 | CG15072-RA | 1..757 | 17..773 | 3735 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-RF | 6011 | CG42856-RF | 862..1618 | 17..773 | 3755 | 99.7 | Plus |
Sik3-RE | 6020 | CG42856-RE | 862..1618 | 17..773 | 3755 | 99.7 | Plus |
Sik3-RD | 6278 | CG42856-RD | 862..1618 | 17..773 | 3755 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18699303..18699640 | 213..550 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 18699702..18699926 | 549..773 | 1095 | 99.1 | Plus |
2R | 25286936 | 2R | 18692665..18692865 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 02:22:43 has no hits.
BS15456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:27 Download gff for
BS15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-PA | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:36 Download gff for
BS15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-PA | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:27:48 Download gff for
BS15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RB | 207..968 | 13..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:00:58 Download gff for
BS15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RD | 857..1618 | 13..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:00:58 Download gff for
BS15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18699305..18699640 | 215..550 | 100 | -> | Plus |
2R | 18692660..18692862 | 13..214 | 99 | -> | Plus |
2R | 18699704..18699926 | 551..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:27:48 Download gff for
BS15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14580165..14580367 | 13..214 | 99 | -> | Plus |
arm_2R | 14586810..14587145 | 215..550 | 100 | -> | Plus |
arm_2R | 14587209..14587431 | 551..773 | 99 | | Plus |
BS15456.complete Sequence
2141 bp assembled on 2010-07-01
GenBank Submission: KX803796
> BS15456.complete
GAAGTTATCAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAG
CTCCTCCAACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGC
AAGATATCCGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAA
GACCATCGGCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTG
TGACCAAGACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAAC
GAGGAGTACCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCT
GCGGCATCCACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGA
TGATCTATCTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCAT
CTGGTGGCCAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCAC
CCAACTCGTCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATC
GCGATCTCAAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAG
CTTGCCGACTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAA
AACTTGGTGTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCT
TGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG
TACGCCTTGGTTTGTGGAGCATTACCTTTCGATGGAAAGACTATCCTGGA
ACTGAAAAGTCGCGTGGTGTTGGGCAAATTTCGCATTCCCTTCTTTATGT
CGCAAGAATGCGAGCAGCTAATACGGAACATGCTGGTGGTGGAGCCTGAT
CGGCGATACACTATCAAACAAATCATCAAGCACCGCTGGCTCAGCGAGTG
GCAGTCAGAGATGCAGGAGCAGGAACGTTTCGGTGACATGTCCCCCGGCT
CGGGAACAGTGTCCAAATCGGCGTCCACATCCTCGCTGGGAAGTGCGTCG
GATTCACCGCCGCAACTGGACTCTGTGGTAATGACGCATATGCTCCAATT
GCCCGGACTGACCGCCGACATGATAGCACAGTCGGTGCACGAGCAGAGAT
TCGACAACATCTACGCCATTTACAACCTGCTGCATGACAAGCTGCAGCAA
AGGCGACGCGAAAACCAAAGACTGCAGCACCACGCCAGCCTAGCCTACTC
CCGATCACGTAAGACGAGCATCACGACGGGCGTGGTGGATCGCTCGGAGC
CCGTCAAGCAGGAATCTCTGGACCGACTCAGTCCGTTGAGCAATGCCAAT
GCCTCCAGCTCAGCTTTGGGCTTTGGCTGGTCCGATGTCGCCGTGGATCT
GGAGAAATATGGTGATTTTGAGCTGGAATGCCTGGCGCGATCAAATGATC
CCCCTGTTAATGCGCAGCATTTGAGTGCACACGCTGGTGGAGGTGTCAAT
GGTGCGAATACCAGACGCCATACAGTGGGACCCGGCGATGTGGCCCACGA
GCAGGCGCTGGCTAATCCCAATGTGCCGCCCATCGACTTCAAGTGTCCAC
CGCAGTGCAGCGATCCCACTCAGCCAGTTCCCTACTATCCAGTTAATCTG
CCCATGCTGCAGAACCAACCCCTGCACAACCTCACCATCAAGGATCAGCA
TTTGCTCAAGCCGCCCGTTGTTATGGGAGCCAGCTCATTTGGGCGTCGTG
CCTCAGACGGCGGGGCAAATCTTCACATCTACTATCCCGCCACGGGCACC
GTTGTGGGTCCAGCTCAGGGTCAGCAAATGGACACGGCCGGGTACTATAT
CAATCCGAATTGCGGCACAGATCCTTTGGCAGTGCAGGAGCTGTCGCCGC
TCAACGAACAGTCGGTGGCGCAGATGCAATGCTGCCAGGAGAATGCCACC
GGCGAATGCAACGAGGAGCTGCAAAGCTATATGCAAAAGCGTGGAGGCAC
CCAGCGCCATACGGTGGGCTGCACGGAGGATCTATCCGTAGCACATGGAT
CAGGAGCAGGATCACAGTCCCAGGCGCCAACTACCTCCTCCAATATGCGG
CAGCGGCGAACAGGATTGCTCACGGTCACCGAGAGACCGCCAGGTGCGTT
AGAGAGGCTAACTAAAATATTATAAAAGCTTTCTAGACCAT
BS15456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-RA | 2109 | CG42856-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
Sik3-RF | 4140 | CG42856-PF | 1..2078 | 17..2094 | 10390 | 100 | Plus |
Sik3-RE | 4149 | CG42856-PE | 1..2077 | 17..2093 | 10385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-RA | 2983 | CG42856-RA | 652..2762 | 17..2127 | 10555 | 100 | Plus |
Sik3-RF | 6011 | CG42856-RF | 862..2939 | 17..2094 | 10390 | 100 | Plus |
Sik3-RE | 6020 | CG42856-RE | 862..2938 | 17..2093 | 10385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18700017..18700611 | 805..1399 | 2975 | 100 | Plus |
2R | 25286936 | 2R | 18699303..18699640 | 213..550 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 18700670..18700953 | 1400..1683 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 18699702..18699959 | 549..806 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 18701018..18701261 | 1683..1926 | 1220 | 100 | Plus |
2R | 25286936 | 2R | 18701317..18701519 | 1925..2127 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 18692665..18692865 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:47:22 has no hits.
BS15456.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 11:11:18 Download gff for
BS15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-RC | 650..2756 | 17..2123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:28 Download gff for
BS15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RA | 652..2758 | 17..2123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:42 Download gff for
BS15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RA | 652..2758 | 17..2123 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:42 Download gff for
BS15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18701319..18701515 | 1927..2123 | 100 | | Plus |
2R | 18692665..18692862 | 17..214 | 100 | -> | Plus |
2R | 18699305..18699640 | 215..550 | 100 | -> | Plus |
2R | 18699704..18699959 | 551..806 | 100 | -> | Plus |
2R | 18700019..18700611 | 807..1399 | 100 | -> | Plus |
2R | 18700670..18700952 | 1400..1682 | 100 | -> | Plus |
2R | 18701018..18701261 | 1683..1926 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:28 Download gff for
BS15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14580170..14580367 | 17..214 | 100 | -> | Plus |
arm_2R | 14586810..14587145 | 215..550 | 100 | -> | Plus |
arm_2R | 14587209..14587464 | 551..806 | 100 | -> | Plus |
arm_2R | 14587524..14588116 | 807..1399 | 100 | -> | Plus |
arm_2R | 14588175..14588457 | 1400..1682 | 100 | -> | Plus |
arm_2R | 14588523..14588766 | 1683..1926 | 100 | -> | Plus |
arm_2R | 14588824..14589020 | 1927..2123 | 100 | | Plus |
BS15456.pep Sequence
Translation from 16 to 2124
> BS15456.pep
MATTPTAGPAAAPPTSSTPQNYKVPSTSKISVDKLLRVGYYELEKTIGKG
NFAVVKLATNIVTKTKVAIKIIDKTCLNEEYLNKTFREIAILKSLRHPHI
TRLYEVMESQSMIYLVTEYAPNGEIFDHLVANGRMKEPEAARVFTQLVSA
VHYCHRRGVVHRDLKAENVLLDKDMNIKLADFGFSNHYEEGATLKTWCGS
PPYAAPEVFQGLEYDGPKSDIWSLGVVLYALVCGALPFDGKTILELKSRV
VLGKFRIPFFMSQECEQLIRNMLVVEPDRRYTIKQIIKHRWLSEWQSEMQ
EQERFGDMSPGSGTVSKSASTSSLGSASDSPPQLDSVVMTHMLQLPGLTA
DMIAQSVHEQRFDNIYAIYNLLHDKLQQRRRENQRLQHHASLAYSRSRKT
SITTGVVDRSEPVKQESLDRLSPLSNANASSSALGFGWSDVAVDLEKYGD
FELECLARSNDPPVNAQHLSAHAGGGVNGANTRRHTVGPGDVAHEQALAN
PNVPPIDFKCPPQCSDPTQPVPYYPVNLPMLQNQPLHNLTIKDQHLLKPP
VVMGASSFGRRASDGGANLHIYYPATGTVVGPAQGQQMDTAGYYINPNCG
TDPLAVQELSPLNEQSVAQMQCCQENATGECNEELQSYMQKRGGTQRHTV
GCTEDLSVAHGSGAGSQSQAPTTSSNMRQRRTGLLTVTERPPGALERLTK
IL*
BS15456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-PA | 702 | CG15072-PA | 1..702 | 1..702 | 3677 | 100 | Plus |
Sik3-PE | 1382 | CG42856-PE | 1..701 | 1..701 | 3638 | 98.9 | Plus |
Sik3-PF | 1379 | CG42856-PF | 1..693 | 1..693 | 3637 | 100 | Plus |
Sik3-PD | 1468 | CG42856-PD | 1..692 | 1..692 | 3631 | 100 | Plus |
Sik3-PC | 1471 | CG18604-PA | 1..692 | 1..692 | 3631 | 100 | Plus |