Clone BS15456 Report

Search the DGRC for BS15456

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptSik3-RA
Protein status:BS15456.pep: full length peptide match
Sequenced Size:2141

Clone Sequence Records

BS15456.3prime Sequence

906 bp (770 high quality bases) assembled on 2006-12-21

> BS15456.3prime
ATGGTCTAGAAAGCTTTTATAATATTTTAGTTAGCCTCTCTAACGCACCT
GGCGGTCTCTCGGTGACCGTGAGCAATCCTGTTCGCCGCTGCCGCATATT
GGAGGAGGTAGTTGGCGCCTGGGACTGTGATCCTGCTCCTGATCCATGTG
CTACGGATAGATCCTCCGTGCAGCCCACCGTATGGCGCTGGGTGCCTCCA
CGCTTTTGCATATAGCTTTGCAGCTCCTCGTTGCATTCGCCGGTGGCATT
CTCCTGGCAGCATTGCATCTGCGCCACCGACTGTTCGTTGAGCGGCGACA
GCTCCTGCACTGCCAAAGGATCTGTGCCGCAATTCGGATTGATATAGTAC
CCGGCCGTGTCCATTTGCTGACCCTGAGCTGGACCCACAACGGTGCCCGT
GGCGGGATAGTAGATGTGAAGATTTGCCCCGCCGTCTGAGGCACGACGCC
CAAATGAGCTGGCTCCCATAACAACGGGCGGCTTGAGCAAATGCTGATCC
TTGATGGTGAGGTTGTGCAGGGGTTGGTTCTGCAGCATGGGCAGATTAAC
TGGATAGTAGGGAACTGGCTGAGTGGGATCGCTGCACTGCGGTGGACACT
TGAAGTCGATGGGCGGCACATTGGGATTAGCCAGCGCCTGCTCGTGGGCC
ACATCGCCGGGTCCCACTGTATGGCGTCTGGTATTCGCACCATTGACACC
TCCACCAGCGTGTGCACTCAAATGCTGCGCATTAACAGGGGGATCATTTG
ATCGCGCCAGGCATTCCAGCTCAAAATCACCATATTTCTCCAGATCCACG
GCGACATCGGAACAGCCAAAGCCCCAAGCTGAGCTGGANGCATTGGCATT
GCTCAACGGACTGAGTCGGTCCAGAGATTCCTGCTTGACGGGCTCCGAGC
GATCAC

BS15456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15072-PA 2109 CG15072-RA 1222..2109 904..17 4371 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-RA 2983 CG42856-RA 1873..2762 904..15 4409 99.7 Minus
Sik3-RF 6011 CG42856-RF 2083..2939 904..48 4244 99.6 Minus
Sik3-RE 6020 CG42856-RE 2083..2938 904..49 4239 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18700670..18700953 742..459 1420 100 Minus
2R 25286936 2R 18701018..18701261 459..216 1220 100 Minus
2R 25286936 2R 18701317..18701519 217..15 1015 100 Minus
2R 25286936 2R 18700450..18700611 904..743 769 98.1 Minus
Blast to na_te.dros performed on 2015-02-11 09:28:30 has no hits.

BS15456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:26 Download gff for BS15456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15072-PA 1219..2109 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:34 Download gff for BS15456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15072-PA 1219..2109 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:16:36 Download gff for BS15456.3prime
Subject Subject Range Query Range Percent Splice Strand
Sik3-RA 1870..2762 15..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:12 Download gff for BS15456.3prime
Subject Subject Range Query Range Percent Splice Strand
Sik3-RA 1870..2762 15..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:12 Download gff for BS15456.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18701319..18701519 15..215 100   Minus
2R 18700670..18700952 460..742 100 -> Minus
2R 18701018..18701261 216..459 100 -> Minus
2R 18700447..18700611 743..906 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:16:36 Download gff for BS15456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14587952..14588116 743..906 97 -> Minus
arm_2R 14588175..14588457 460..742 100 -> Minus
arm_2R 14588523..14588766 216..459 100 -> Minus
arm_2R 14588824..14589024 15..215 100   Minus

BS15456.5prime Sequence

773 bp (753 high quality bases) assembled on 2006-12-21

> BS15456.5prime
GAAGTTATCAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAG
CTCCTCCAACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGC
AAGATATCCGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAA
GACCATCGGCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTG
TGACCAAGACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAAC
GAGGAGTACCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCT
GCGGCATCCACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGA
TGATCTATCTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCAT
CTGGTGGCCAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCAC
CCAACTCGTCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATC
GCGATCTCAAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAG
CTTGCCGACTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAA
AACTTGGTGTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCT
TGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG
TACGCCTTGGTTTGTGGAGCATTACCTTTCGATGGATAGACTATCCTGGA
ACTGACAAGTCGCGTGGTGTTGG

BS15456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15072-PA 2109 CG15072-RA 1..757 17..773 3735 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-RF 6011 CG42856-RF 862..1618 17..773 3755 99.7 Plus
Sik3-RE 6020 CG42856-RE 862..1618 17..773 3755 99.7 Plus
Sik3-RD 6278 CG42856-RD 862..1618 17..773 3755 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18699303..18699640 213..550 1690 100 Plus
2R 25286936 2R 18699702..18699926 549..773 1095 99.1 Plus
2R 25286936 2R 18692665..18692865 17..217 1005 100 Plus
Blast to na_te.dros performed on 2015-01-30 02:22:43 has no hits.

BS15456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:27 Download gff for BS15456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15072-PA 1..757 17..773 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:36 Download gff for BS15456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15072-PA 1..757 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:27:48 Download gff for BS15456.5prime
Subject Subject Range Query Range Percent Splice Strand
Sik3-RB 207..968 13..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:00:58 Download gff for BS15456.5prime
Subject Subject Range Query Range Percent Splice Strand
Sik3-RD 857..1618 13..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:00:58 Download gff for BS15456.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18699305..18699640 215..550 100 -> Plus
2R 18692660..18692862 13..214 99 -> Plus
2R 18699704..18699926 551..773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:27:48 Download gff for BS15456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14580165..14580367 13..214 99 -> Plus
arm_2R 14586810..14587145 215..550 100 -> Plus
arm_2R 14587209..14587431 551..773 99   Plus

BS15456.complete Sequence

2141 bp assembled on 2010-07-01

GenBank Submission: KX803796

> BS15456.complete
GAAGTTATCAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAG
CTCCTCCAACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGC
AAGATATCCGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAA
GACCATCGGCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTG
TGACCAAGACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAAC
GAGGAGTACCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCT
GCGGCATCCACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGA
TGATCTATCTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCAT
CTGGTGGCCAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCAC
CCAACTCGTCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATC
GCGATCTCAAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAG
CTTGCCGACTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAA
AACTTGGTGTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCT
TGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG
TACGCCTTGGTTTGTGGAGCATTACCTTTCGATGGAAAGACTATCCTGGA
ACTGAAAAGTCGCGTGGTGTTGGGCAAATTTCGCATTCCCTTCTTTATGT
CGCAAGAATGCGAGCAGCTAATACGGAACATGCTGGTGGTGGAGCCTGAT
CGGCGATACACTATCAAACAAATCATCAAGCACCGCTGGCTCAGCGAGTG
GCAGTCAGAGATGCAGGAGCAGGAACGTTTCGGTGACATGTCCCCCGGCT
CGGGAACAGTGTCCAAATCGGCGTCCACATCCTCGCTGGGAAGTGCGTCG
GATTCACCGCCGCAACTGGACTCTGTGGTAATGACGCATATGCTCCAATT
GCCCGGACTGACCGCCGACATGATAGCACAGTCGGTGCACGAGCAGAGAT
TCGACAACATCTACGCCATTTACAACCTGCTGCATGACAAGCTGCAGCAA
AGGCGACGCGAAAACCAAAGACTGCAGCACCACGCCAGCCTAGCCTACTC
CCGATCACGTAAGACGAGCATCACGACGGGCGTGGTGGATCGCTCGGAGC
CCGTCAAGCAGGAATCTCTGGACCGACTCAGTCCGTTGAGCAATGCCAAT
GCCTCCAGCTCAGCTTTGGGCTTTGGCTGGTCCGATGTCGCCGTGGATCT
GGAGAAATATGGTGATTTTGAGCTGGAATGCCTGGCGCGATCAAATGATC
CCCCTGTTAATGCGCAGCATTTGAGTGCACACGCTGGTGGAGGTGTCAAT
GGTGCGAATACCAGACGCCATACAGTGGGACCCGGCGATGTGGCCCACGA
GCAGGCGCTGGCTAATCCCAATGTGCCGCCCATCGACTTCAAGTGTCCAC
CGCAGTGCAGCGATCCCACTCAGCCAGTTCCCTACTATCCAGTTAATCTG
CCCATGCTGCAGAACCAACCCCTGCACAACCTCACCATCAAGGATCAGCA
TTTGCTCAAGCCGCCCGTTGTTATGGGAGCCAGCTCATTTGGGCGTCGTG
CCTCAGACGGCGGGGCAAATCTTCACATCTACTATCCCGCCACGGGCACC
GTTGTGGGTCCAGCTCAGGGTCAGCAAATGGACACGGCCGGGTACTATAT
CAATCCGAATTGCGGCACAGATCCTTTGGCAGTGCAGGAGCTGTCGCCGC
TCAACGAACAGTCGGTGGCGCAGATGCAATGCTGCCAGGAGAATGCCACC
GGCGAATGCAACGAGGAGCTGCAAAGCTATATGCAAAAGCGTGGAGGCAC
CCAGCGCCATACGGTGGGCTGCACGGAGGATCTATCCGTAGCACATGGAT
CAGGAGCAGGATCACAGTCCCAGGCGCCAACTACCTCCTCCAATATGCGG
CAGCGGCGAACAGGATTGCTCACGGTCACCGAGAGACCGCCAGGTGCGTT
AGAGAGGCTAACTAAAATATTATAAAAGCTTTCTAGACCAT

BS15456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-RA 2109 CG42856-PA 1..2109 17..2125 10545 100 Plus
Sik3-RF 4140 CG42856-PF 1..2078 17..2094 10390 100 Plus
Sik3-RE 4149 CG42856-PE 1..2077 17..2093 10385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-RA 2983 CG42856-RA 652..2762 17..2127 10555 100 Plus
Sik3-RF 6011 CG42856-RF 862..2939 17..2094 10390 100 Plus
Sik3-RE 6020 CG42856-RE 862..2938 17..2093 10385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18700017..18700611 805..1399 2975 100 Plus
2R 25286936 2R 18699303..18699640 213..550 1690 100 Plus
2R 25286936 2R 18700670..18700953 1400..1683 1420 100 Plus
2R 25286936 2R 18699702..18699959 549..806 1290 100 Plus
2R 25286936 2R 18701018..18701261 1683..1926 1220 100 Plus
2R 25286936 2R 18701317..18701519 1925..2127 1015 100 Plus
2R 25286936 2R 18692665..18692865 17..217 1005 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:47:22 has no hits.

BS15456.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 11:11:18 Download gff for BS15456.complete
Subject Subject Range Query Range Percent Splice Strand
CG15072-RC 650..2756 17..2123 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:28 Download gff for BS15456.complete
Subject Subject Range Query Range Percent Splice Strand
Sik3-RA 652..2758 17..2123 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:42 Download gff for BS15456.complete
Subject Subject Range Query Range Percent Splice Strand
Sik3-RA 652..2758 17..2123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:42 Download gff for BS15456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18701319..18701515 1927..2123 100   Plus
2R 18692665..18692862 17..214 100 -> Plus
2R 18699305..18699640 215..550 100 -> Plus
2R 18699704..18699959 551..806 100 -> Plus
2R 18700019..18700611 807..1399 100 -> Plus
2R 18700670..18700952 1400..1682 100 -> Plus
2R 18701018..18701261 1683..1926 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:28 Download gff for BS15456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14580170..14580367 17..214 100 -> Plus
arm_2R 14586810..14587145 215..550 100 -> Plus
arm_2R 14587209..14587464 551..806 100 -> Plus
arm_2R 14587524..14588116 807..1399 100 -> Plus
arm_2R 14588175..14588457 1400..1682 100 -> Plus
arm_2R 14588523..14588766 1683..1926 100 -> Plus
arm_2R 14588824..14589020 1927..2123 100   Plus

BS15456.pep Sequence

Translation from 16 to 2124

> BS15456.pep
MATTPTAGPAAAPPTSSTPQNYKVPSTSKISVDKLLRVGYYELEKTIGKG
NFAVVKLATNIVTKTKVAIKIIDKTCLNEEYLNKTFREIAILKSLRHPHI
TRLYEVMESQSMIYLVTEYAPNGEIFDHLVANGRMKEPEAARVFTQLVSA
VHYCHRRGVVHRDLKAENVLLDKDMNIKLADFGFSNHYEEGATLKTWCGS
PPYAAPEVFQGLEYDGPKSDIWSLGVVLYALVCGALPFDGKTILELKSRV
VLGKFRIPFFMSQECEQLIRNMLVVEPDRRYTIKQIIKHRWLSEWQSEMQ
EQERFGDMSPGSGTVSKSASTSSLGSASDSPPQLDSVVMTHMLQLPGLTA
DMIAQSVHEQRFDNIYAIYNLLHDKLQQRRRENQRLQHHASLAYSRSRKT
SITTGVVDRSEPVKQESLDRLSPLSNANASSSALGFGWSDVAVDLEKYGD
FELECLARSNDPPVNAQHLSAHAGGGVNGANTRRHTVGPGDVAHEQALAN
PNVPPIDFKCPPQCSDPTQPVPYYPVNLPMLQNQPLHNLTIKDQHLLKPP
VVMGASSFGRRASDGGANLHIYYPATGTVVGPAQGQQMDTAGYYINPNCG
TDPLAVQELSPLNEQSVAQMQCCQENATGECNEELQSYMQKRGGTQRHTV
GCTEDLSVAHGSGAGSQSQAPTTSSNMRQRRTGLLTVTERPPGALERLTK
IL*

BS15456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-PA 702 CG15072-PA 1..702 1..702 3677 100 Plus
Sik3-PE 1382 CG42856-PE 1..701 1..701 3638 98.9 Plus
Sik3-PF 1379 CG42856-PF 1..693 1..693 3637 100 Plus
Sik3-PD 1468 CG42856-PD 1..692 1..692 3631 100 Plus
Sik3-PC 1471 CG18604-PA 1..692 1..692 3631 100 Plus