Clone Sequence Records
BS15459.3prime Sequence
888 bp (753 high quality bases) assembled on 2006-12-21
> BS15459.3prime
ATGGTCTAGAAAGCTTTTACCATCGCATGTTGTAACCTGTCCCGCGTGTG
TTATGGTGCTCCCAATCGTCTGGAGAATTGACCACCTGCCATTCGTACCA
CACTTTGGTTGCATCCACGCATCGCCAAAACTGGATGGATATAGTCTGTC
CCTCCCTCAGAGTTCTTGGACGCGTTGCGAAGAACATGGGGAACCAGGAG
AACATGCCAGGCGTATGGGTCAGAGGATTGATGCTTAGGCAGATGTCCTT
GTACAAATGGGTATCAAAGTATCCGCCGATTCCGTGCAGCACGCAATCTT
TATTGACTTTAAATGAAACCGTCTTGCAGCGAGTATTGTCAATATTTTCC
GCTCGATTAGGATGTACGAATTCAAACAGAGCCTGCGGCTCGTCAATATG
GTAAATATTCTTTAGCAGCGACACATAGCCGTAGTCGAAGGCAGGATAGG
TTGGTAACAATTGGCAGACATTTTGGTGCAGCACTGCTGACATCAGTGGA
TTAATGTAGGAGGTGGATTTGTAGGGTATACTGATTCCATCCGGTTTGAG
CAGCTTCAGTGCTCCATCAAGGCACTCGGGCGAAAGTTCATTATCGCCAA
AGGAACCAAGTAACTCCGAAACCATGATGTCAGCCAGCTCTGGAGGGGAA
AAGTCCCGCATGTCCTTTGAAAAAATGTGAACATCCTTATCGGCCCAAAG
CGTTTTAACCATGTTGGAGAGGGTGCGGATGGCATTGGGATTCTTTTCTA
TGATGTAGAGGCGAACTTTGCGCTTCGTTAACTCGGCAGCATTGAAAACA
GCTCTCGCTAAAGGACCTCGTCCTCCACCCAGTAGCATTACAACTGTCAG
TTTTCTTTTTAGCTCGGCAGCGCTTACTCGATCCACCA
BS15459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3730-PA | 1833 | csul-RA | 997..1828 | 853..22 | 4160 | 100 | Minus |
| CG3730-PB | 1818 | csul-RB | 982..1813 | 853..22 | 4160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RB | 1998 | CG3730-RB | 1045..1917 | 885..13 | 4260 | 99.3 | Minus |
| csul-RA | 2013 | CG3730-RA | 1060..1932 | 885..13 | 4260 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16266141..16266653 | 685..173 | 2565 | 100 | Minus |
| 2R | 25286936 | 2R | 16265913..16266076 | 848..685 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 16266718..16266878 | 173..13 | 775 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:54:03 has no hits.
BS15459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:32 Download gff for
BS15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-PB | 948..1818 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:42 Download gff for
BS15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3730-PB | 948..1818 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:21:34 Download gff for
BS15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 1058..1932 | 13..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:13 Download gff for
BS15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 1058..1932 | 13..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:13 Download gff for
BS15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16265914..16266076 | 685..847 | 100 | -> | Minus |
| 2R | 16266142..16266653 | 173..684 | 100 | -> | Minus |
| 2R | 16266719..16266878 | 13..172 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:21:34 Download gff for
BS15459.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12153419..12153581 | 685..847 | 100 | -> | Minus |
| arm_2R | 12153647..12154158 | 173..684 | 100 | -> | Minus |
| arm_2R | 12154224..12154383 | 13..172 | 98 | | Minus |
BS15459.5prime Sequence
892 bp (672 high quality bases) assembled on 2006-12-21
> BS15459.5prime
GAAGTTATCCCTTGACATGAATTACTACGTCTGTCTGCACCAGGAGGGTG
TTAATAGCATACCCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAAT
GTGGTTTCCACCTCTATCAACGCCAATATGTTGCCCTTCGAACCACACGA
ATCGGATCCCACATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATT
CCAAGGTGATATTTACCATGTCCGACGTGAATGTGGACTCGCCGAATGAC
AAGCTGCGCGAACACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGC
GGAGCACCTGCAAAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGG
AAAACGAGAATCTGGCCTCCATTGTGCTGGCCAAAACAAAGGATGATTTT
CCTTCAGGGAACTGGTTCATCCAAGTGCCCATCACCAATCCAGAACTGGC
CACATTCGAGCACCGAAAGGATGCCACCGCCGAGGAGGTGGCTGAAGCGG
AATCGAATGACCCGTGGAACTGGTGGAATAACCTGCGCATGGTCACCAAA
CACAGCACCAAAGTGAAGGTTGTGATAGAGCTAAACGATGCTGATCGACC
CAGCAAGGAAACAGTGCGTCGCTGGTTGGGCGAACCAATCGAGGCAATCA
TCATTCCGTCTTCCCTGTTCGTCAGAAACCGCTCCAACTACTGTGTGCTG
AAGAAGGAGTGGCAGCTCATCGTCGGGCACTTCATCTCGGTACGGGCCAA
CATCATCATCTCCACAAATCCCAACGATAAGGCTTTGTGCCAGTACGCGG
ATTACGTAAATAAGCTAATTAATGATAACTGCGATAAGCACATGCTAAAC
AGCTATGAAAACATGCTGGAAATTCCCCTGCAGCCTCTTTGC
BS15459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3730-PA | 1833 | csul-RA | 1..876 | 17..892 | 4355 | 99.8 | Plus |
| CG3730-PB | 1818 | csul-RB | 376..861 | 407..892 | 2405 | 99.7 | Plus |
| CG3730-PB | 1818 | csul-RB | 1..376 | 17..392 | 1880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RA | 2013 | CG3730-RA | 96..971 | 17..892 | 4365 | 99.9 | Plus |
| csul-RB | 1998 | CG3730-RB | 96..956 | 17..892 | 4130 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16265166..16265626 | 392..852 | 2305 | 100 | Plus |
| 2R | 25286936 | 2R | 16264747..16265122 | 17..392 | 1880 | 100 | Plus |
| 2R | 25286936 | 2R | 16265686..16265727 | 851..892 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:53:48 has no hits.
BS15459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:33 Download gff for
BS15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:44 Download gff for
BS15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3730-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:54:34 Download gff for
BS15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..971 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:25 Download gff for
BS15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..971 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:25 Download gff for
BS15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16264747..16265122 | 17..392 | 100 | -> | Plus |
| 2R | 16265167..16265626 | 393..852 | 100 | -> | Plus |
| 2R | 16265688..16265727 | 853..892 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:54:34 Download gff for
BS15459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12152252..12152627 | 17..392 | 100 | -> | Plus |
| arm_2R | 12152672..12153131 | 393..852 | 100 | -> | Plus |
| arm_2R | 12153193..12153232 | 853..892 | 97 | | Plus |
BS15459.complete Sequence
1865 bp assembled on 2007-11-02
GenBank Submission: KX803675
> BS15459.complete
GAAGTTATCAGTCGACATGAATTACTACGTCTGTCTGCACCAGGAGGGTG
TTAATAGCATACCCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAAT
GTGGTTTCCACCTCTATCAACGCCAATATGTTGCCCTTCGAACCACACGA
ATCGGATCCCACATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATT
CCAAGGTGATATTTACCATGTCCGACGTGAATGTGGACTCGCCGAATGAC
AAGCTGCGCGAACACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGC
GGAGCACCTGCAAAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGG
AAAACGAGAATCTGGCCTCCATTGTGCTGGCCAAAACAAAGGATGATTTT
CCTTCAGGGAACTGGTTCATCCAAGTGCCCATCACCAATCCAGAACTGGC
CACATTCGAGCACCGAAAGGATGCCACCGCCGAGGAGGTGGCTGAAGCGG
AATCGAATGACCCGTGGAACTGGTGGAATAACCTGCGCATGGTCACCAAA
CACAGCACCAAAGTGAAGGTTGTGATAGAGCTAAACGATGCTGATCGACC
CAGCAAGGAAACAGTGCGTCGCTGGTTGGGCGAACCAATCGAGGCAATCA
TCATTCCGTCTTCCCTGTTCGTCAGAAACCGCTCCAACTACTGTGTGCTG
AAGAAGGAGTGGCAGCTCATCGTCGGGCACTTCATCTCGGTACGGGCCAA
CATCATCATCTCCACAAATCCCAACGATAAGGCTTTGTGCCAGTACGCGG
ATTACGTAAATAAGCTAATTAATGATAACTGCGATAAGCACATGCTAAAC
AGCTATGAAAACATGCTGGAAATTCCACTGCAGCCTCTTTGCGATAATCT
GGACACCTATACCTATGAGGTATTCGAAACTGATCCTGTCAAATACAAAC
TCTATCAGGATGCCGTACAAGCGGCCCTGTTGGATCGAGTAAGCGCTGCG
GAGGCTAAAACGAAACTGACAGTTGTAATGCTACTGGGTGGAGGACGAGG
TCCTTTAGCGAGAGCTGTTTTCAATGCTGCCGAGTTAACGAAGCGCAAAG
TTCGCCTCTACATCATAGAAAAGAATCCCAATGCCATCCGCACCCTCTCC
AACATGGTTAAAACGCTTTGGGCCGATAAGGATGTTCACATTTTTTCAAA
GGACATGCGGGACTTTTCCCCTCCAGAGCTGGCTGACATCATGGTTTCGG
AGTTACTTGGTTCCTTTGGCGATAATGAACTTTCGCCCGAGTGCCTTGAT
GGAGCACTGAAGCTGCTCAAACCGGATGGAATCAGTATACCCTACAAATC
CACCTCCTACATTAATCCACTGATGTCAGCAGTGCTGCACCAAAATGTCT
GCCAATTGTTACCAACCTATCCTGCCTTCGACTACGGCTATGTGTCGCTG
CTAAAGAATATTTACCATATTGACGAGCCGCAGGCTCTGTTTGAATTCGT
ACATCCTAATCGAGCGGAAAATATTGACAATACTCGCTGCAAGACGGTTT
CATTTAAAGTCAATAAAGATTGCGTGCTGCACGGAATCGGCGGATACTTT
GATACCCATTTGTACAAGGACATCTGCCTAAGCATCAATCCTCTGACCCA
TACGCCTGGCATGTTCTCCTGGTTCCCCATGTTCTTCGCAACGCGTCCAA
GAACTCTGAGGGAGGGACAGACTATATCCATCCAGTTTTGGCGATGCGTG
GATGCAACCAAAGTGTGGTACGAATGGCAGGTGGTCAATTCTCCAGACGA
TTGGGAGCACCATAACACACGCGGGACAGGTTACAACATGCGATTGTAAA
AGCTTTCTAGACCAT
BS15459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RA | 1833 | CG3730-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| csul-RB | 1818 | CG3730-PB | 1..1818 | 17..1849 | 8905 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RA | 2013 | CG3730-RA | 96..1932 | 17..1853 | 9170 | 99.9 | Plus |
| csul-RB | 1998 | CG3730-RB | 96..1917 | 17..1853 | 8910 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16266141..16266653 | 1181..1693 | 2565 | 100 | Plus |
| 2R | 25286936 | 2R | 16265166..16265626 | 392..852 | 2305 | 100 | Plus |
| 2R | 25286936 | 2R | 16264747..16265122 | 17..392 | 1880 | 100 | Plus |
| 2R | 25286936 | 2R | 16265686..16265853 | 851..1018 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 16265913..16266076 | 1018..1181 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 16266718..16266878 | 1693..1853 | 790 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:14:43 has no hits.
BS15459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:04 Download gff for
BS15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 1..1833 | 17..1849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:48:19 Download gff for
BS15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 73..1909 | 17..1853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:11 Download gff for
BS15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..1926 | 17..1847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:12 Download gff for
BS15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 73..1903 | 17..1847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:26 Download gff for
BS15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..1926 | 17..1847 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:26 Download gff for
BS15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16266719..16266872 | 1694..1847 | 100 | | Plus |
| 2R | 16264747..16265122 | 17..392 | 100 | -> | Plus |
| 2R | 16265167..16265626 | 393..852 | 100 | -> | Plus |
| 2R | 16265688..16265853 | 853..1018 | 100 | -> | Plus |
| 2R | 16265914..16266076 | 1019..1181 | 100 | -> | Plus |
| 2R | 16266142..16266653 | 1182..1693 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:11 Download gff for
BS15459.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12153419..12153581 | 1019..1181 | 100 | -> | Plus |
| arm_2R | 12153193..12153358 | 853..1018 | 100 | -> | Plus |
| arm_2R | 12152252..12152627 | 17..392 | 100 | -> | Plus |
| arm_2R | 12152672..12153131 | 393..852 | 100 | -> | Plus |
| arm_2R | 12153647..12154158 | 1182..1693 | 100 | -> | Plus |
| arm_2R | 12154224..12154377 | 1694..1847 | 100 | | Plus |
BS15459.pep Sequence
Translation from 16 to 1848
> BS15459.pep
MNYYVCLHQEGVNSIPKLIEKAFANNYNVVSTSINANMLPFEPHESDPTY
PATILSGSDWNSKVIFTMSDVNVDSPNDKLREHAKEVFMRDVAWAEHLQN
VGNLMVRLRGPENENLASIVLAKTKDDFPSGNWFIQVPITNPELATFEHR
KDATAEEVAEAESNDPWNWWNNLRMVTKHSTKVKVVIELNDADRPSKETV
RRWLGEPIEAIIIPSSLFVRNRSNYCVLKKEWQLIVGHFISVRANIIIST
NPNDKALCQYADYVNKLINDNCDKHMLNSYENMLEIPLQPLCDNLDTYTY
EVFETDPVKYKLYQDAVQAALLDRVSAAEAKTKLTVVMLLGGGRGPLARA
VFNAAELTKRKVRLYIIEKNPNAIRTLSNMVKTLWADKDVHIFSKDMRDF
SPPELADIMVSELLGSFGDNELSPECLDGALKLLKPDGISIPYKSTSYIN
PLMSAVLHQNVCQLLPTYPAFDYGYVSLLKNIYHIDEPQALFEFVHPNRA
ENIDNTRCKTVSFKVNKDCVLHGIGGYFDTHLYKDICLSINPLTHTPGMF
SWFPMFFATRPRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHN
TRGTGYNMRL*
BS15459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-PA | 610 | CG3730-PA | 1..610 | 1..610 | 3264 | 100 | Plus |
| csul-PB | 605 | CG3730-PB | 1..605 | 1..610 | 3219 | 99.2 | Plus |
