Clone Sequence Records
BS15465.3prime Sequence
835 bp (812 high quality bases) assembled on 2006-12-21
> BS15465.3prime
ATGGTCTAGAAAGCTTTCACACGAAATACGACGCCAGTTGTCCCATCTTA
TCCTTGGCCACTCGACTGCCACGCACCCCGCCCCCAGCATTAGGTCCACC
GCCAGCCGTAACCGCTCCTCCGGAGCCAAAAGCCGCCCCGCCCATTCCGC
CACCGCCTCGACCTGCCTTGCCGCCACGGAAGCCGCCGCCACTGCGAACT
GGTCTGGATGCCACCGCCCGATGCTTCTCGACCAAGTGCGAGAAGTCTGC
GGAGCAGAAGATGCAGCCGCTCTTCTCCTCGCTTCCGTCCTTGAACTTGC
TCTTGTCCGACTTGTAGACCACATTCACCTGCTGGGCGCCACACTCCTGG
CACTTGGCCTCTTCCACCGTGATCTTGGTGGCTCCCTTGAAGCAGTTGAT
GATCACGTCGCAGCGATTGCAGCCCAGCTTCCAGGTTGGCGCAAGCGTAC
AATCGAGCACCAGGACCCCGGTGGGGCACTCCACGCAGCTGGAGATGCCC
AGCGTGTTCAGCGAGTGCGGGCAGTTGGCGTTCGTGCAGGTGTTGCAGCC
CCCCAAGTGGGGCATGTCGCTGAACGGCGGATGGTTGTAACAGTACGGGC
AGAACGGATACGAACGCCCCTTCACGCCAGTGGAGAAAGCCAGCAGATCA
AAGTCGTCCAGCGGGCACTTGAACTCGCGATACACCTTCACATTGCCAAT
GGGCAGGGCGTATGTCTCATCGCAATGAGAGCAGTGCAATCTCGCCGGTT
TGGTCTGTATGTACTTCATGTAGCGCCTACACTTGCCGCAGCGCGAGTGC
GCCTTGCCCGACTCGGGCAGCGGCGAGAAGGATAC
BS15465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3458-PA | 2628 | Top3beta-RA | 1810..2624 | 835..21 | 4050 | 99.8 | Minus |
| CG32745-PB | 471 | CG32745-RB | 265..404 | 619..480 | 700 | 100 | Minus |
| CG32745-PB | 471 | CG32745-RB | 191..244 | 749..696 | 245 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 3296 | CG3458-RB | 2069..2887 | 835..17 | 4065 | 99.8 | Minus |
| Top3beta-RA | 2963 | CG3458-RA | 2069..2887 | 835..17 | 4065 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6284974..6285370 | 361..757 | 1985 | 100 | Plus |
| X | 23542271 | X | 6284547..6284892 | 17..362 | 1715 | 99.7 | Plus |
| X | 23542271 | X | 6280300..6280562 | 480..749 | 1160 | 97 | Plus |
| X | 23542271 | X | 6285432..6285512 | 755..835 | 390 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 03:24:52 has no hits.
BS15465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:39 Download gff for
BS15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3458-PA | 1810..2628 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:51 Download gff for
BS15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3458-PA | 1810..2628 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:47:39 Download gff for
BS15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 2069..2887 | 17..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:39 Download gff for
BS15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 2069..2887 | 17..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:39 Download gff for
BS15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6285432..6285512 | 755..835 | 98 | | Plus |
| X | 6284547..6284890 | 17..360 | 99 | <- | Plus |
| X | 6284974..6285367 | 361..754 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:47:39 Download gff for
BS15465.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6178580..6178923 | 17..360 | 99 | <- | Plus |
| arm_X | 6179007..6179400 | 361..754 | 100 | <- | Plus |
| arm_X | 6179465..6179545 | 755..835 | 98 | | Plus |
BS15465.5prime Sequence
868 bp (797 high quality bases) assembled on 2006-12-21
> BS15465.5prime
GAAGTTATCACTCGACATGAAGAGCGTGCTGATGGTGGCCGAGAAGCCCT
CGCTGGCGGCCTCGCTGGCGGGGATTCTCTCAAACGGACGCTGCACGGCC
AAGCGTGGCACCGGCAACGGCTGCTCCACGCACGAGTGGACGGGCAACTT
TCGGAACGAGGGCAGCGTCCACTTCCGGATGACTTCCGTGTGCGGTCATG
TCATGTCGCTGGACTTCAATAAGAAGTACAACTGCTGGGACAAGGTGGAT
CCCATCCAGCTCTTCGGTTGTGCCACCGAAAAGAAGGAAACGAATCCCAA
GCAGAACATGCGCAAATTTCTGGCCCACGAGGCGCGCGGCTGTGACTATC
TGGTGCTCTGGCTGGATTGCGACAAGGAGGGCGAGAACATCTGCTTCGAG
GTGATGGACGCCGTGAAGCATGTCATCAACAATGTGTACAGCGATCAGGT
GACATACCGTGCCCACTTCTCGGCTATCACGGAGAAGGACATCAAGAAAG
CCATGGAGACGTTGGGGCATCCCAACGAGAACGAGGCCAAGTCGGTGGAC
GCCCGGCAGGAATTGGACCTGCGCATTGGCTGCGCCTTTACCCGCTTTCA
AACGAAGTTCTTTCAGGATCGCTACGGTGACCTGGATTCGTCGCTGATCT
CCTACGGTCCCTGCCAGACGCCCACGCTCGGTTTCTGCGTGAAGCGGCAC
GACGACATCCAGACCTTTAAGCCGGAGAGCTTCTGGCATCTGCAGCTCCT
CGCCGGCCAGCCGGAAGTCACGCTTGAATGGGCGCGCGGTCGGGTCTTCA
AGAANGACATCGCCATCATGCTGCTGAATCGCGTCAAGGAGCACAAGAAA
GCCACTGTGGAGAGCGTG
BS15465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3458-PA | 2628 | Top3beta-RA | 1..852 | 17..868 | 4216 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 3296 | CG3458-RB | 259..1111 | 16..868 | 4239 | 99.8 | Plus |
| Top3beta-RA | 2963 | CG3458-RA | 259..1111 | 16..868 | 4239 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6286822..6287570 | 855..107 | 3719 | 99.7 | Minus |
| X | 23542271 | X | 6287640..6287732 | 108..16 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:13:29 has no hits.
BS15465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:40 Download gff for
BS15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3458-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:52 Download gff for
BS15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3458-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:40:06 Download gff for
BS15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 259..1111 | 16..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:51 Download gff for
BS15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 259..1111 | 16..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:51 Download gff for
BS15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6286822..6287569 | 108..855 | 99 | <- | Minus |
| X | 6287641..6287732 | 16..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:40:06 Download gff for
BS15465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6181674..6181765 | 16..107 | 100 | | Minus |
| arm_X | 6180855..6181602 | 108..855 | 99 | <- | Minus |
BS15465.complete Sequence
2660 bp assembled on 2012-04-25
GenBank Submission: KX805550
> BS15465.complete
GAAGTTATCAGTCGACATGAAGAGCGTGCTGATGGTGGCCGAGAAGCCCT
CGCTGGCGGCCTCGCTGGCGGGGATTCTCTCAAACGGACGCTGCACGGCC
AAGCGTGGCACCGGCAACGGCTGCTCCACGCACGAGTGGACGGGCAACTT
TCGGAACGAGGGCAGCGTCCACTTCCGGATGACTTCCGTGTGCGGTCATG
TCATGTCGCTGGACTTCAATAAGAAGTACAACTGCTGGGACAAGGTGGAT
CCCATCCAGCTCTTCGGTTGTGCCACCGAAAAGAAGGAAACGAATCCCAA
GCAGAACATGCGCAAATTTCTGGCCCACGAGGCGCGCGGCTGTGACTATC
TGGTGCTCTGGCTGGATTGCGACAAGGAGGGCGAGAACATCTGCTTCGAG
GTGATGGACGCCGTGAAGCATGTCATCAACAATGTGTACAGCGATCAGGT
GACATACCGTGCCCACTTCTCGGCTATCACGGAGAAGGACATCAAGAAAG
CCATGGAGACGTTGGGGCATCCCAACGAGAACGAGGCCAAGTCGGTGGAC
GCCCGGCAGGAATTGGACCTGCGCATTGGCTGCGCCTTTACCCGCTTTCA
AACGAAGTTCTTTCAGGATCGCTACGGTGACCTGGATTCGTCGCTGATCT
CCTACGGTCCCTGCCAGACGCCCACGCTCGGTTTCTGCGTGAAGCGGCAC
GACGACATCCAGACCTTTAAGCCGGAGAGCTTCTGGCATCTGCAGCTCCT
CGCCGGCCAGCCGGAAGTCACGCTTGAATGGGCGCGCGGTCGGGTCTTCA
AGAAGGACATCGCCATCATGCTGCTGAATCGCGTCAAGGAGCACAAGAAG
GCCACTGTGGAGAGCGTGGCCAGCAAGGAGGCCTACAAGAGCAAACCACA
GGCACTGAACACCGTCGAACTGATGCGTATCTGCAGCTCCGGACTGGGCA
TCGGACCCTTCCAGGCGATGCAGATAGCTGAGCGCCTGTACACGCAGGGC
TACATCAGCTATCCGCGAACAGAGACCAATCAGTATCCGACTAACTTCGA
TCTGCCGGCCGTGCTGCACGTGCTGAAGCCATCGGCGGACTTCGGTGAGG
AGGCGCGCTCCATTTTGGGCGACATTCAGACGCCGCGAAAGGGCAAGGAT
GCCGGCGACCATCCACCCATCACGCCAATGAAACTGGGCAACCGCAGTGA
CTTCGATCGCGACACCTGGCGTGTCTACGAGTTCATCTGCCGGCACTTCA
TGGGCACGGTGTCGAGGGATCTTAAGTACCGCGTGACGACGGCAAAGCTG
AGTGTTGGCATGGAGACATTCAGTTGCACGGCCAGTGTGCTGATCGATGC
CGGTTTCACCAAGGTGATGACGTGGTCGGCCTTCGGCAAGGACGAACCCC
AGCCGCCGTTCGTTCAGGGCACTCAGGTGGCCATCAACGATGTGCGACTT
ATCGAAAGCCAGACAGGACCGCCGGATTATCTCACCGAATCGGAGCTAAT
CACACTGATGGAGGAGCACGGCATCGGGACGGATGCCTCCATACCGGTGC
ACATCAACAACATCTGCCAGCGCAACTATGTGCACATTGAGAACGGTCGC
AAGCTGATGCCAACGACGCTGGGCATTGTGCTGGTCCACGGCTATCAGAA
GATCGATCCGGAACTGGTGCTGCCCACCATGCGAACGGAGGTGGAGCGCA
TGCTGACACTGATTGCCCAGGGATCGGCTAACTTTCAGGATGTTCTGCGA
CACGCCATCAAGATTTTCAAGCTGAAGTTTATGTACTTTGTGAAGAACAT
CGACAGCATGGACGCACTGTTTGAGGTATCCTTCTCGCCGCTGGCCGAGT
CGGGCAAGGCGCACTCGCGCTGCGGCAAGTGTAGGCGCTACATGAAGTAC
ATACAGACCAAACCGGCGAGATTGCACTGCTCTCATTGCGATGAGACATA
CGCCCTGCCCATTGGCAATGTGAAGGTGTATCGCGAGTTCAAGTGCCCGC
TGGACGACTTTGATCTGCTGGCTTTCTCCACTGGCGTGAAGGGGCGTTCG
TATCCGTTCTGCCCGTACTGTTACAACCATCCGCCGTTCAGCGACATGCC
CCACTTGGGGGGCTGCAACACCTGCACGAACGCCAACTGCCCGCACTCGC
TGAACACGCTGGGCATCTCCAGCTGCGTGGAGTGCCCCACCGGGGTCCTG
GTGCTCGATTGTACGCTTGCGCCAACCTGGAAGCTGGGCTGCAATCGCTG
CGACGTGATCATCAACTGCTTCAAGGGAGCCACCAAGATCACGGTGGAAG
AGGCCAAGTGCCAGGAGTGTGGCGCCCAGCAGGTGAATGTGGTCTACAAG
TCGGACAAGAGCAAGTTCAAGGACGGAAGCGAGGAGAAGAGCGGCTGCAT
CTTCTGCTCCGCAGACTTCTCGCACTTGGTCGAGAAGCATCGGGCGGTGG
CATCCAGACCAGTTCGCAGTGGCGGCGGCTTCCGTGGCGGCAAGGCAGGT
CGAGGCGGTGGCGGAATGGGCGGGGCGGCTTTTGGCTCCGGAGGAGCGGT
TACGGCTGGCGGTGGACCTAATGCTGGGGGCGGGGTGCGTGGCAGTCGAG
TGGCCAAGGATAAGATGGGACAACTGGCGTCGTATTTCGTTTGAAAGCTT
TCTAGACCAT
BS15465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 2628 | CG3458-PB | 1..2628 | 17..2644 | 13140 | 100 | Plus |
| Top3beta-RA | 2628 | CG3458-PA | 1..2628 | 17..2644 | 13140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-RB | 3296 | CG3458-RB | 259..2887 | 16..2644 | 13145 | 100 | Plus |
| Top3beta-RA | 2963 | CG3458-RA | 259..2887 | 16..2644 | 13145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6285432..6286482 | 1906..856 | 5255 | 100 | Minus |
| X | 23542271 | X | 6286822..6287570 | 855..107 | 3745 | 100 | Minus |
| X | 23542271 | X | 6284974..6285370 | 2300..1904 | 1985 | 100 | Minus |
| X | 23542271 | X | 6284547..6284892 | 2644..2299 | 1730 | 100 | Minus |
| X | 23542271 | X | 6280300..6280562 | 2181..1912 | 1160 | 97 | Minus |
| X | 23542271 | X | 6280575..6280756 | 1856..1675 | 835 | 97.3 | Minus |
| X | 23542271 | X | 6287640..6287732 | 108..16 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:11:53 has no hits.
BS15465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:05 Download gff for
BS15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 1..2628 | 17..2644 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:48:21 Download gff for
BS15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 233..2861 | 16..2644 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:33 Download gff for
BS15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 234..2860 | 17..2643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:38 Download gff for
BS15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 260..2886 | 17..2643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:05 Download gff for
BS15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 234..2860 | 17..2643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:18 Download gff for
BS15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3beta-RA | 260..2886 | 17..2643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:18 Download gff for
BS15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6284548..6284890 | 2301..2643 | 100 | <- | Minus |
| X | 6284974..6285367 | 1907..2300 | 100 | <- | Minus |
| X | 6285432..6286482 | 856..1906 | 100 | <- | Minus |
| X | 6286822..6287569 | 108..855 | 100 | <- | Minus |
| X | 6287641..6287731 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:38 Download gff for
BS15465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6178581..6178923 | 2301..2643 | 100 | <- | Minus |
| arm_X | 6179007..6179400 | 1907..2300 | 100 | <- | Minus |
| arm_X | 6179465..6180515 | 856..1906 | 100 | <- | Minus |
| arm_X | 6180855..6181602 | 108..855 | 100 | <- | Minus |
| arm_X | 6181674..6181764 | 17..107 | 100 | | Minus |
BS15465.pep Sequence
Translation from 16 to 2643
> BS15465.pep
MKSVLMVAEKPSLAASLAGILSNGRCTAKRGTGNGCSTHEWTGNFRNEGS
VHFRMTSVCGHVMSLDFNKKYNCWDKVDPIQLFGCATEKKETNPKQNMRK
FLAHEARGCDYLVLWLDCDKEGENICFEVMDAVKHVINNVYSDQVTYRAH
FSAITEKDIKKAMETLGHPNENEAKSVDARQELDLRIGCAFTRFQTKFFQ
DRYGDLDSSLISYGPCQTPTLGFCVKRHDDIQTFKPESFWHLQLLAGQPE
VTLEWARGRVFKKDIAIMLLNRVKEHKKATVESVASKEAYKSKPQALNTV
ELMRICSSGLGIGPFQAMQIAERLYTQGYISYPRTETNQYPTNFDLPAVL
HVLKPSADFGEEARSILGDIQTPRKGKDAGDHPPITPMKLGNRSDFDRDT
WRVYEFICRHFMGTVSRDLKYRVTTAKLSVGMETFSCTASVLIDAGFTKV
MTWSAFGKDEPQPPFVQGTQVAINDVRLIESQTGPPDYLTESELITLMEE
HGIGTDASIPVHINNICQRNYVHIENGRKLMPTTLGIVLVHGYQKIDPEL
VLPTMRTEVERMLTLIAQGSANFQDVLRHAIKIFKLKFMYFVKNIDSMDA
LFEVSFSPLAESGKAHSRCGKCRRYMKYIQTKPARLHCSHCDETYALPIG
NVKVYREFKCPLDDFDLLAFSTGVKGRSYPFCPYCYNHPPFSDMPHLGGC
NTCTNANCPHSLNTLGISSCVECPTGVLVLDCTLAPTWKLGCNRCDVIIN
CFKGATKITVEEAKCQECGAQQVNVVYKSDKSKFKDGSEEKSGCIFCSAD
FSHLVEKHRAVASRPVRSGGGFRGGKAGRGGGGMGGAAFGSGGAVTAGGG
PNAGGGVRGSRVAKDKMGQLASYFV*
BS15465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3beta-PB | 875 | CG3458-PB | 1..875 | 1..875 | 4698 | 100 | Plus |
| Top3beta-PA | 875 | CG3458-PA | 1..875 | 1..875 | 4698 | 100 | Plus |
| Top3alpha-PA | 1250 | CG10123-PA | 29..636 | 5..612 | 934 | 35.9 | Plus |
