Clone BS15466 Report

Search the DGRC for BS15466

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptSpt5-RA
Protein status:BS15466.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15466.3prime Sequence

882 bp (857 high quality bases) assembled on 2006-12-21

> BS15466.3prime
ATGGTCTAGAAAGCTTTTAGTCGATGGACTTCATCTTGCAGAGGAAGTTA
ATCGGTAGCAGCTTGATTTCCTCGTTAATCCTGCAGACGAACACATCGCC
ATCCTTGGACAGCACTCTGCCCACGGACTCGCGGTCATCGCCGTAGATGA
TCTTGAATTCGTCGCCATTGCATGGTAGCACTGGCGCCAAGTGCTCACTA
ACGATGGACACACTGCGATCCTCCTGGCGCAGGAATACGGAGCAGACGCC
GTTCGAAACGGTGCGAATGATGCCCGTTTGCCCAACGAGATCGGTGTCGT
CGTGCGTGTGAATCCGAACTTCAATGTCTGTGGTACACCAGTCGCCCATC
GACGAGTCCAGACTGGCTCCAGGGGTCTGCGGATTGTACGGCGACTGCGG
TATGCCACCAGGAGTATTCGGTGAATAAGTCGATGGCGACGGAGTGTTCA
TGTAACCAACGGGATACGGCGACGGAGCAGGACTGGGGCTGGGATTGAAT
GGACTGTAGCTTCTGTCCGATCCATACAGAGTGCCAGGAGTTTGCGGGGC
AAACTGGGAAGTCATTTGATAGCCAGGGGTACTTGGATTGTATCCAGGGC
TGGGACTGGGCTCCTCAAGGGAGTAATCGAAATCGTTGTTCCTGGCCGGC
GTTGTGTTTGCCGTGGGATCCCAAGCGCCATGACGTGGTGTCATGCTGCC
ATCGTGCGATGGTGTCATTGTACCATAAGGAGTACGAGTATCCGTATCCC
AGTTGGGCGTCTGGCTTCCCACCAACGGAGTTTTCGATCCGGCAGCGGTA
TAACTGGGAGTCTGGGCACCGTAGCCGGGAGTGCGAGCTGGGGTGCGTCC
ATATGTGGAGACACTGCCCTCTTTACGGGTAA

BS15466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7626-PA 3237 Spt5-RA 2372..3237 882..17 4305 99.8 Minus
CG7626-PB 2889 Spt5-RB 2024..2889 882..17 4305 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-RA 3460 CG7626-RA 2488..3353 882..17 4315 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19441226..19441791 582..17 2830 100 Minus
2R 25286936 2R 19440868..19441170 882..580 1500 99.7 Minus
Blast to na_te.dros performed on 2015-02-02 14:11:22 has no hits.

BS15466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:41 Download gff for BS15466.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-PB 2026..2889 17..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:54 Download gff for BS15466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7626-PB 2026..2889 17..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:15:14 Download gff for BS15466.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 2488..3359 7..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:52:02 Download gff for BS15466.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 2488..3359 7..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:52:02 Download gff for BS15466.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19440868..19441167 583..882 99 -> Minus
2R 19441226..19441797 7..582 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:15:14 Download gff for BS15466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15328373..15328672 583..882 99 -> Minus
arm_2R 15328731..15329302 7..582 99   Minus

BS15466.5prime Sequence

839 bp (760 high quality bases) assembled on 2006-12-21

> BS15466.5prime
GAAGTTATCAGTCGACATGTCGGACTCGGAAGTCAGTAATATGTCGGATA
GTGGCTCCGAAGATGGATCCATTTCCAACAAGTCGCAACGGAGTGCCCGC
TCCAAGTCAAGATCGCGTTCCAGGTCCGGTTCCAGGGGATCTCGCTCCGT
TTCCAGGTCCAGATCACGCTCTCAATCGGGCCACTCTAGATCTGGCTCGG
AATCTCCACAGAGACGAGATAATCGCGGCAAGAGCGATGAATCCGGCGAA
GAGGAGGAGGAGCCACCAGGTGAGGACATCGATTCCGAGGAGTACGATGA
GGAGGAGAACGACGATCACCCAAGGAAGAAGAAAAAGAAGGAGCGTTTTG
GGGGCTTCATCATTGACGAGGCCGAAGTGGACGATGAAGTCGATGAAGAT
GACGAGTGGGAAGAGGGTGCCAATGAAATTGGCATTGTTGGCAATGAGAT
CGATGAGCTGGGCCCCACAGCCAGGGATATTGAAATTCGACGACGAGGCA
CAAACCTTTGGGACACTCAAAAGGAGGACGAGATAGAGGAGTATCTCCGT
AAGAAGTACGCCGATGAGTCAATTGCAAAACGCCACTTTGGAGATGGCGG
TGAAGAGATGTCAGACGAAATTACCCAACAAACTCTATTGCCCGGCATCA
AGGATCCCAATTTGTGGATGGTGAAATGTCGTATAGGCGAGGAGAAGGCC
ACAGCGCTTCTTCTAATGCGAAAGTACTTAACCTACCTGAACACAGACGA
TCCATTGCAAATCAAATCTATTATTGCACCAGAGGGCGTCAAGGGATACA
TTTACCTGGAGGCCTATAAGCAGACTCATGTTAAAACTT

BS15466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7626-PA 3237 Spt5-RA 1..823 17..839 4115 100 Plus
CG7626-PB 2889 Spt5-RB 1..823 17..839 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-RA 3460 CG7626-RA 117..939 17..839 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19437972..19438345 17..390 1870 100 Plus
2R 25286936 2R 19438785..19438972 652..839 940 100 Plus
2R 25286936 2R 19438590..19438728 514..652 695 100 Plus
2R 25286936 2R 19438407..19438531 389..513 625 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:57:45 has no hits.

BS15466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:42 Download gff for BS15466.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-PB 1..823 17..839 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:55 Download gff for BS15466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7626-PB 1..823 17..839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:37:13 Download gff for BS15466.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 112..939 9..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:11:19 Download gff for BS15466.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 112..939 9..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 02:11:19 Download gff for BS15466.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19437967..19438343 9..388 98 -> Plus
2R 19438407..19438531 389..513 100 -> Plus
2R 19438590..19438727 514..651 100 -> Plus
2R 19438785..19438972 652..839 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:37:13 Download gff for BS15466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15325472..15325848 9..388 98 -> Plus
arm_2R 15325912..15326036 389..513 100 -> Plus
arm_2R 15326095..15326232 514..651 100 -> Plus
arm_2R 15326290..15326477 652..839 100   Plus

BS15466.complete Sequence

3269 bp assembled on 2007-12-11

GenBank Submission: KX802551

> BS15466.complete
GAAGTTATCAGTCGACATGTCGGACTCGGAAGTCAGTAATATGTCGGATA
GTGGCTCCGAAGATGGATCCATTTCCAACAAGTCGCAACGGAGTGCCCGC
TCCAAGTCAAGATCGCGTTCCAGGTCCGGTTCCAGGGGATCTCGCTCCGT
TTCCAGGTCCAGATCACGCTCTCAATCGGGCCACTCTAGATCTGGCTCGG
AATCTCCACAGAGACGAGATAATCGCGGCAAGAGCGATGAATCCGGCGAA
GAGGAGGAGGAGCCACCAGGTGAGGACATCGATTCCGAGGAGTACGATGA
GGAGGAGAACGACGATCACCCAAGGAAGAAGAAAAAGAAGGAGCGTTTTG
GGGGCTTCATCATTGACGAGGCCGAAGTGGACGATGAAGTCGATGAAGAT
GACGAGTGGGAAGAGGGTGCCAATGAAATTGGCATTGTTGGCAATGAGAT
CGATGAGCTGGGCCCCACAGCCAGGGATATTGAAATTCGACGACGAGGCA
CAAACCTTTGGGACACTCAAAAGGAGGACGAGATAGAGGAGTATCTCCGT
AAGAAGTACGCCGATGAGTCAATTGCAAAACGCCACTTTGGAGATGGCGG
TGAAGAGATGTCAGACGAAATTACCCAACAAACTCTATTGCCCGGCATCA
AGGATCCCAATTTGTGGATGGTGAAATGTCGTATAGGCGAGGAGAAGGCC
ACAGCGCTTCTTCTAATGCGAAAGTACTTAACCTACCTGAACACAGACGA
TCCATTGCAAATCAAATCTATTATTGCACCAGAGGGCGTCAAGGGATACA
TTTACCTGGAGGCCTATAAGCAGACTCATGTTAAAACTTGCATTGATAAC
GTGGGTAATCTTCGGATGGGCAAATGGAAACAGGAAATGGTGCCCATCAA
GGAGATGACGGATGTGCTAAAGGTGGTCAAGGAGCAGGTTGGCCTTAAAG
TGAAACAATGGGTGCGCTTGAAGCGCGGTCTCTACAAGGACGACATCGCA
CAGGTGGACTACGTGGATCTGGCCCAGAACCAAGTACATCTTAAGTTGCT
TCCTCGCATTGACTACACACGCATGCGAGGAGCCTTGCGAACAACAGCAA
CGGAGAGTGACGATAGCAAGCGCAAGAAGAAACGCCGCCCAGCAGCTAAA
CCTTTTGATCCAGAGGCCGTAAGGGCAATTGGAGGTGAAGTACACTCAGA
TGGTGATTTCCTGCTCTTCGAGGGAAACCGGTATTCGCGAAAGGGATTCC
TGTATAAAAACTTTACCATGTCGGCCATTCTCTCGGACGGTGTAAAGCCC
ACTTTAGCCGAGCTAGAACGCTTTGAAGAATCTCCGGAAGAGGTAAACTT
GGAAATTATGGGCACCGTGAAGGATGATCCCACTATGGCTCACTCATTCT
CAATGGGCGACAATGTGGAAGTCTGCGTGGGTGATTTGGAAAACTTACAG
GCCAAGATTGTGGCTATTGACGGCACCATGATTACTGTCATGCCCAAACA
TCAGGATTTAAAGGATCCTTTGATTTTCAAAGCCAGTGAGCTGCGCAAAT
ACTTCAAAACAGGAGATCACGCCAGAGTGTTGGCTGGTCGTTACGAAGGC
GAAACTGGCCTCATTATTCGCGTCGAGCCTACAAGAGTGGTGCTCGTCTC
CGATCTAACCAATCACGAGTTGGAGGTGCTGCCAAGGGACTTGCAACTGT
GCTCGGATGTGGCCACAGGTGTGGATTGTCTCGGCCAGTTTCAATGGGGA
GATATGGTGCAACTGGATTCCCAGAATGTGGGTGTCATAGTGCGTTTGGA
GAGGGAGAATTTCCATGTCTTGGGCATGAATGGCAAGTGCATCGAGTGCA
AGCCAACTGCATTGCACAAGCGAAAGGAGAACCGTCATACGGTGGCTCTG
GATGCAGATCAAAACCAAATCCGCCGGCGCGATGTAGTCAAGGTGATGGA
GGGACCCCATGCAGGACGTTCCGGCGAGATCAAGCATTTGTATCGCAGTC
TGGCCTTTCTCCATTGCCGCATGTACACGGAGAACGGTGGAATATTTGTG
TGCAAGACTAGGCATTTGCAGTTGGCTGGAGGCAGCAAGACTACCGTTAG
TAATGCCGGCATTGTGGGCGGCCTAGGATTTATGTCGCCGCGCATTCAAT
CGCCCATGCATCCATCCGGTGGTCGTGGAGCTCGTGGTGGCGCCCGTGGT
GGACGAGGTGGTTTCCGAGTGACCCGTGACCGTGAGATCTTGGGTAAAAC
CATTAAGATTAGTGGAGGACCTTATAAGGGCGCCGTGGGAATTGTGAAGG
ATGCCACCGAGAGCACGGCTCGTGTGGAACTGCATACCTCATGCCAGACG
ATTTCGGTAGACCGGAATCACATTGCCATTGTGGGAGTTACCGGTAAAGA
GGGCAGTGTCTCCACATATGGACGCACCCCAGCTCGCACTCCCGGCTACG
GTGCCCAGACTCCCAGTTATACCGCTGCCGGATCGAAAACTCCGTTGGTG
GGAAGCCAGACGCCCAACTGGGATACGGATACTCGTACTCCTTATGGTAC
AATGACACCATCGCACGATGGCAGCATGACACCACGTCATGGCGCTTGGG
ATCCCACGGCAAACACAACGCCGGCCAGGAACAACGATTTCGATTACTCC
CTTGAGGAGCCCAGTCCCAGCCCTGGATACAATCCAAGTACCCCTGGCTA
TCAAATGACTTCCCAGTTTGCCCCGCAAACTCCTGGCACTCTGTATGGAT
CGGACAGAAGCTACAGTCCATTCAATCCCAGCCCCAGTCCTGCTCCGTCG
CCGTATCCCGTTGGTTACATGAACACTCCGTCGCCATCGACTTATTCACC
GAATACTCCTGGTGGCATACCGCAGTCGCCGTACAATCCGCAGACCCCTG
GAGCCAGTCTGGACTCGTCGATGGGCGACTGGTGTACCACAGACATTGAA
GTTCGGATTCACACGCACGACGACACCGATCTCGTTGGGCAAACGGGCAT
CATTCGCACCGTTTCGAACGGCGTCTGCTCCGTATTCCTGCGCCAGGAGG
ATCGCAGTGTGTCCATCGTTAGTGAGCACTTGGCGCCAGTGCTACCATGC
AATGGCGACGAATTCAAGATCATCTACGGCGATGACCGCGAGTCCGTGGG
CAGAGTGCTGTCCAAGGATGGCGATGTGTTCGTCTGCAGGATTAACGAGG
AAATCAAGCTGCTACCGATTAACTTCCTCTGCAAGATGAAGTCCATCGAC
TAAAAGCTTTCTAGACCAT

BS15466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-RA 3237 CG7626-PA 1..3237 17..3253 16185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-RA 3460 CG7626-RA 117..3353 17..3253 16185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19440444..19441170 1964..2690 3635 100 Plus
2R 25286936 2R 19441226..19441791 2688..3253 2830 100 Plus
2R 25286936 2R 19438785..19439236 652..1103 2260 100 Plus
2R 25286936 2R 19437972..19438345 17..390 1870 100 Plus
2R 25286936 2R 19439879..19440134 1512..1767 1280 100 Plus
2R 25286936 2R 19440194..19440390 1768..1964 985 100 Plus
2R 25286936 2R 19439651..19439826 1339..1514 880 100 Plus
2R 25286936 2R 19439424..19439592 1172..1340 845 100 Plus
2R 25286936 2R 19438590..19438728 514..652 695 100 Plus
2R 25286936 2R 19438407..19438531 389..513 625 100 Plus
2R 25286936 2R 19439297..19439369 1102..1174 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:54:03 has no hits.

BS15466.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:06 Download gff for BS15466.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 1..3237 17..3253 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:48:23 Download gff for BS15466.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 111..3358 9..3263 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:01 Download gff for BS15466.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 117..3351 17..3251 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:46 Download gff for BS15466.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 116..3350 17..3251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:31 Download gff for BS15466.complete
Subject Subject Range Query Range Percent Splice Strand
Spt5-RA 117..3351 17..3251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:31 Download gff for BS15466.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19439881..19440134 1514..1767 100 -> Plus
2R 19440194..19440389 1768..1963 100 -> Plus
2R 19439426..19439592 1174..1340 100 -> Plus
2R 19439653..19439825 1341..1513 100 -> Plus
2R 19437972..19438343 17..388 100 -> Plus
2R 19438407..19438531 389..513 100 -> Plus
2R 19438590..19438727 514..651 100 -> Plus
2R 19438785..19439235 652..1102 100 -> Plus
2R 19439298..19439368 1103..1173 100 -> Plus
2R 19440444..19441167 1964..2687 100 -> Plus
2R 19441226..19441789 2688..3251 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:01 Download gff for BS15466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15325477..15325848 17..388 100 -> Plus
arm_2R 15325912..15326036 389..513 100 -> Plus
arm_2R 15326095..15326232 514..651 100 -> Plus
arm_2R 15326290..15326740 652..1102 100 -> Plus
arm_2R 15326803..15326873 1103..1173 100 -> Plus
arm_2R 15326931..15327097 1174..1340 100 -> Plus
arm_2R 15327158..15327330 1341..1513 100 -> Plus
arm_2R 15327386..15327639 1514..1767 100 -> Plus
arm_2R 15327699..15327894 1768..1963 100 -> Plus
arm_2R 15327949..15328672 1964..2687 100 -> Plus
arm_2R 15328731..15329294 2688..3251 100   Plus

BS15466.pep Sequence

Translation from 16 to 3252

> BS15466.pep
MSDSEVSNMSDSGSEDGSISNKSQRSARSKSRSRSRSGSRGSRSVSRSRS
RSQSGHSRSGSESPQRRDNRGKSDESGEEEEEPPGEDIDSEEYDEEENDD
HPRKKKKKERFGGFIIDEAEVDDEVDEDDEWEEGANEIGIVGNEIDELGP
TARDIEIRRRGTNLWDTQKEDEIEEYLRKKYADESIAKRHFGDGGEEMSD
EITQQTLLPGIKDPNLWMVKCRIGEEKATALLLMRKYLTYLNTDDPLQIK
SIIAPEGVKGYIYLEAYKQTHVKTCIDNVGNLRMGKWKQEMVPIKEMTDV
LKVVKEQVGLKVKQWVRLKRGLYKDDIAQVDYVDLAQNQVHLKLLPRIDY
TRMRGALRTTATESDDSKRKKKRRPAAKPFDPEAVRAIGGEVHSDGDFLL
FEGNRYSRKGFLYKNFTMSAILSDGVKPTLAELERFEESPEEVNLEIMGT
VKDDPTMAHSFSMGDNVEVCVGDLENLQAKIVAIDGTMITVMPKHQDLKD
PLIFKASELRKYFKTGDHARVLAGRYEGETGLIIRVEPTRVVLVSDLTNH
ELEVLPRDLQLCSDVATGVDCLGQFQWGDMVQLDSQNVGVIVRLERENFH
VLGMNGKCIECKPTALHKRKENRHTVALDADQNQIRRRDVVKVMEGPHAG
RSGEIKHLYRSLAFLHCRMYTENGGIFVCKTRHLQLAGGSKTTVSNAGIV
GGLGFMSPRIQSPMHPSGGRGARGGARGGRGGFRVTRDREILGKTIKISG
GPYKGAVGIVKDATESTARVELHTSCQTISVDRNHIAIVGVTGKEGSVST
YGRTPARTPGYGAQTPSYTAAGSKTPLVGSQTPNWDTDTRTPYGTMTPSH
DGSMTPRHGAWDPTANTTPARNNDFDYSLEEPSPSPGYNPSTPGYQMTSQ
FAPQTPGTLYGSDRSYSPFNPSPSPAPSPYPVGYMNTPSPSTYSPNTPGG
IPQSPYNPQTPGASLDSSMGDWCTTDIEVRIHTHDDTDLVGQTGIIRTVS
NGVCSVFLRQEDRSVSIVSEHLAPVLPCNGDEFKIIYGDDRESVGRVLSK
DGDVFVCRINEEIKLLPINFLCKMKSID*

BS15466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Spt5-PA 1078 CG7626-PA 1..1078 1..1078 5672 100 Plus