Clone BS15468 Report

Search the DGRC for BS15468

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptMat89Ba-RA
Protein status:BS15468.pep: full length peptide match
Sequenced Size:3614

Clone Sequence Records

BS15468.3prime Sequence

756 bp (721 high quality bases) assembled on 2006-12-21

> BS15468.3prime
ATGGTCTAGAAAGCTTCTATTTCAAGACCTTAAGGGTTGAGCTTTTTATT
AGGCGTTTCCTTTTGGGTAGTGCTTTTTTCCCGGTGCCCTTGCGTTGCCT
ATGCTTTTTCGGCTTTGGCTTCGACTCCTCCTCTGCCTTGTTGGCATCAA
AGTACCGCATGGGCTTCTGATGCTCGCGCTGTTCCCGTTTGAGCTCCTCT
GGTGTGGCGATGCGCAGGTAGAAATCTTTCAGTAAGAGTTTGAAGTCCTC
GAGCAGTGTTTCCTTGAGAACTTGAACCTTTTTATTACCACAAGGACTGC
ATGCCTGCAGCTCTGTGACCTTAAATGGCTTTGCAGCGAATTCCGTTGGT
GGCCGCCATACAATGCCCAGTTCCTTGCCTCCGTGCGGATTGTAAAAGAA
CGCAGCAAAGTCGGAGTATGCAGATCTTAGTAGTCCCACAATTCGAGCAA
TGTAATCTGATCCTGCGCGGGGCAAGCTAAAGTTTGGCTGGCTAAATGAA
ACAAATGGTGACCCCAGATCGTAGCTTAAGGAATTCGGCACGAGATCTGG
CTTAAATTGGATAACCAGATCGTATCCCTCGTTGGAAGCTCGAAATAATT
GGGCCGGCCGCACAAACCTCAGATCTTTCGACATCAGGCTGGTTTCAATA
ATCTCGAGCGCATGGCGGGCCAGTCGCGTCACATGTCCAAGCACCCGTTG
ACTGGGTGACTGATCCGAGGTCCACAATCGTCCGGCATGCTGCATATCGT
AAGAGG

BS15468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12785-PA 3582 CG12785-RA 2843..3582 756..17 3700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mat89Ba-RA 3797 CG12785-RA 2924..3663 756..17 3700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16268463..16268870 17..424 2040 100 Plus
3R 32079331 3R 16268937..16269268 425..756 1660 100 Plus
Blast to na_te.dros performed on 2015-02-02 14:11:09 has no hits.

BS15468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:44 Download gff for BS15468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12785-PA 2843..3582 17..756 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:58 Download gff for BS15468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12785-PA 2843..3582 17..756 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:15:11 Download gff for BS15468.3prime
Subject Subject Range Query Range Percent Splice Strand
Mat89Ba-RA 2924..3665 11..756 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:52:01 Download gff for BS15468.3prime
Subject Subject Range Query Range Percent Splice Strand
Mat89Ba-RA 2924..3665 11..756 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:52:01 Download gff for BS15468.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16268461..16268870 11..424 99 <- Plus
3R 16268937..16269268 425..756 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:15:11 Download gff for BS15468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12094183..12094592 11..424 99 <- Plus
arm_3R 12094659..12094990 425..756 100   Plus

BS15468.5prime Sequence

822 bp (808 high quality bases) assembled on 2006-12-21

> BS15468.5prime
GAAGTTATCCGTCGACATGCGATTTGTACAGGGAAACATCATGCCAGGAA
AGTTGGTGGGCTCTCCGAAGGGAGCTGCTCGAACAGGTACCCAAGCAATT
GCACATGCCGGGGATCACAGCGACCTTGATGAACCAAAACCCAAAATCGC
CAAGAGCGACCCACCATCCACTGCCATACCAAAGAAGAACAACTTCAAGC
AGAGAGAAGGTACCAAGAATGTAAAGCCGCCCACTTTGGAGGAGATGAAG
GAGCTACGAGACACCCAAAATCTCTTCCACTCCAATCTCTTTAAGCTTCA
AGTTAAGGAAATGCTGGAGGAGCTGCAGTTAAAGCAGAAATACACAGATT
TCATTGAAAACTGGCTTGAATCCTTTACGGCCTTTACCCGACAGCTAAAG
GATGGCTTGATGGAGCGTACCCACTTGGAAGTTCCAATGAAGCTTTCTGA
AAAGCCGACCGGATTTGTTTTCTCCAAGCCCACCAGGGAACCTTATCTGA
TCGGAGCCGCCGCCACGGGCACTTTGCTGGGTCCCAAAATTGTAGTGGAT
GTGGCCCTGGAGATGCCAAAAGAATCCCTGCACAAAGAAGATTACCTAAA
CCTTCGCTATGACCAGAAGCGAGCTTTGTATCTTACTTATGTGACGGAGA
GGATGATGGAGTCCCCAGATTATGCAGAAGATCAGTTTAATTTCAACTAC
TATGCTAACAACCCGCTTAAGCCGGTTCTGGAATTGATCCCAGTTACTAA
GCAAGTAAACAAGCACCTGCAAGTGCGTCTGTTCATCACTGCCCCATTAA
GCAGTTTTAAAGCAGGCAGATT

BS15468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12785-PA 3582 CG12785-RA 1..806 17..822 3980 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mat89Ba-RA 3797 CG12785-RA 82..887 17..822 4000 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16271473..16272240 822..55 3810 99.7 Minus
3R 32079331 3R 16272294..16272334 57..17 205 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:20:04 has no hits.

BS15468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:46 Download gff for BS15468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12785-PA 1..806 17..822 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:04:59 Download gff for BS15468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12785-PA 1..806 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:14:34 Download gff for BS15468.5prime
Subject Subject Range Query Range Percent Splice Strand
Mat89Ba-RA 82..887 17..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:30:01 Download gff for BS15468.5prime
Subject Subject Range Query Range Percent Splice Strand
Mat89Ba-RA 82..887 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:01 Download gff for BS15468.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16271473..16272239 56..822 99 <- Minus
3R 16272296..16272334 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:14:34 Download gff for BS15468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12097195..12097961 56..822 99 <- Minus
arm_3R 12098018..12098056 17..55 100   Minus

BS15468.complete Sequence

3614 bp assembled on 2008-08-15

GenBank Submission: KX801394

> BS15468.complete
GAAGTTATCCGTCGACATGCGATTTGTACAGGGAAACATCATGCCAGGAA
AGTTGGTGGGCTCTCCGAAGGGAGCTGCTCGAACAGGTACCCAAGCAATT
GCACATGCCGGGGATCACAGCGACCTTGATGAACCAAAACCCAAAATCGC
CAAGAGCGACCCACCATCCACTGCCATACCAAAGAAGAACAACTTCAAGC
AGAGAGAAGGTACCAAGAATGTAAAGCCGCCCACTTTGGAGGAGATGAAG
GAGCTACGAGACACCCAAAATCTCTTCCACTCCAATCTCTTTAAGCTTCA
AGTTAAGGAAATGCTGGAGGAGCTGCAGTTAAAGCAGAAATACACAGATT
TCATTGAAAACTGGCTTGAATCCTTTACGGCCTTTACCCGACAGCTAAAG
GATGGCTTGATGGAGCGTACCCACTTGGAAGTTCCAATGAAGCTTTCTGA
AAAGCCGACCGGATTTGTTTTCTCCAAGCCCACCAGGGAACCTTATCTGA
TCGGAGCCGCCGCCACGGGCACTTTGCTGGGTCCCAAAATTGTAGTGGAT
GTGGCCCTGGAGATGCCAAAAGAATCCCTGCACAAAGAAGATTACCTAAA
CCTTCGCTATGACCAGAAGCGAGCTTTGTATCTTACTTATGTGACGGAGA
GGATGATGGAGTCCCCAGATTATGCAGAAGATCAGTTTAATTTCAACTAC
TATGCTAACAACCCGCTTAAGCCGGTTCTGGAATTGATCCCAGTTACTAA
GCAAGTAAACAAGCACCTGCAAGTGCGTCTGTTCATCACTGCCCCATTAA
GCAGTTTTAAGCCAGGCAGATTTGTTCCCTGGAACAACAATATTCGGCCC
TCGTTTTACGGTGACGAATGGGACGAGAAAGATCCGCTGCCCTCCACCCA
ACACTACAACGCAAACGTACTGTTTGATCTAACTTTGTCCGAGAACCAGG
CTCAATTGGATAAGGCCTTTAAGAGCAGGCGTAATTTTCAGGACGGCCTG
CTGCTCCTTAAAGTATGGTTGCGTCAGAGGCAACTGGACATAGGTTACAG
TGGGTTTGGTGCCCACATCTTAGCCGCTTTTATTGTGTACCTAAATACGC
AGCGCATTCTGCATCAGTCAAGCAGCAGTTACCAAGTGGCACGCACTGTA
TGGAACCAACTGGCGAACACGGACTGGACGAAAGGCATTAGCCTGTCTGT
TGCTCCCATTCAAACGGAAGAATTAAACAAGTTTGCCGAACACTATGACG
TTTGCTTTATAGACTTCACTGGACAGCATAATCTATGCGCAAATATTCCG
CTTTACCTGTATCAGAGAGTTCGAGAGGAGGCCAAACTGGCGGTGGAACT
ACTGAACGACATGAAGCTAAACAGTTTCCCGCTTATCTTTATGCAAAAGT
GTCCACTGTACAGCAGGGTGGATAATATCTTAAAGATTTCCAATTATTCA
TGCATAAATCAAATGCTTACACTGCATTCGCATCCTCGAATTAAGTACGA
TTTTGCTAATTATGGTTACCCGCAGCTGCTACATTTACTGACTGAGCTCC
TTAAAAAGGGACTTGCTGAACGTGTCCACTCCATACTACCCTTAGAAACT
GCGACAGCCGCCTGGCCTGTGGAAAAAAAAGCGCCCGTTATTGGGAAGTA
TATTCAACTGGGCCTTATACTTCAGCCAGAGCACGCATACCAGGTGTTAA
ACAAAGGACCTGCTGCCAACGATGATCATGAGGGAGCTGAGGAATTCCGA
CGGTTCTGGGGAGAGAAATCAAACCTACGTCGGTTTCAGGATGGCAGCAT
CACAGAAGCTGTGGTTTGGGGGACCGCCCAGGATTCACCCGCCAAGAAGC
GACTAATTGTTCGCCAGATTGTGCTGCATCTATTGGAGCATCACCTACAA
CTGGACAGCAAGGAAGTACAATACATTGGCGGCGAGTTGGACCAAGTCTA
CCAGCTGTCTCCTTGGTTTAAGGTCAATAAGCTAAAGACCAAGCTGCCAT
TGGGTCAAGATACCGACGCAGAGGCACTTAGTCCGCACGTCATCCGCTGC
TATGATGAGTTGGCACGCCAACTACACGGGCTGAATGATCTTCCTCTAGA
GATAGTCTCCATATCAGGCGTCTCGCCCATTTTCCGCTACTGCGAGCCGC
AGCCCGTTCTCCCACAGGCGCTTCTGGTAGAAAACCGCATCCTGGCAAGC
AGCATTCAGCGTGTGGTAATCCAGCTCGGGCAAAGCGGCAAGTGGCCCAC
TGAACTTGGTGCACTGCGTGCTCTTAAAACTGCATTTCTTATCGAAATTG
GCGAAAAGTTGGAAGCGCAGTGCCGGCTTCATTGGGTGATGTCCGCCGAC
GGTCTGCTCGTACTCAAGCAAGGTTACTGCTTCCTTATAGAGCTGGCACA
CAACAAGGAGCTGGCGCTGCTGAAGCAGGAAGTTACTGAGCGTGGCATAA
CTACATATATAGACAATGCAGCCAGTCGTTCCTTAGAGCGTCAACATTAT
ATTCTACCCAAAGTAAGTGGGGCTCTACATTCGCTTCATCAAACTTACAG
CGCATTTGGTTCCACTGTGCTGTTGGCCAAGCGCTGGCTGGCCACACAAC
TGCTGGACGATGGCTTGTGGCCTGATATGGCTACTGAGCTACTGGTGGCG
CATCTCTTTCAGCAGCGGTATGCACCGCAGTCCATAGCGGCACCTCAAAC
TGGATTCATACGTTTCCTGCAGCTGCTTTCCCATAGCGATTTTAATGGCG
AACTCTTCCTGCTAAACTTCAACAATAGCTGGCAGGAACAACAAATTGCC
GATCTGGAGCACAACTACCGCAGCAACCGTCAAAGTTATCCTCCTTTGGC
TGTGGCCACCTCTTACGATATGCAGCATGCCGGACGATTGTGGACCTCGG
ATCAGTCACCCAGTCAACGGGTGCTTGGACATGTGACGCGACTGGCCCGC
CATGCGCTCGAGATTATTGAAACCAGCCTGATGTCGAAAGATCTGAGGTT
TGTGCGGCCGGCCCAATTATTTCGAGCTTCCAACGAGGGATACGATCTGG
TTATCCAATTTAAGCCAGATCTCGTGCCGAATTCCTTAAGCTACGATCTG
GGGTCACCATTTGTTTCATTTAGCCAGCCAAACTTTAGCTTGCCCCGCGC
AGGATCAGATTACATTGCTCGAATTGTGGGACTACTAAGATCTGCATACT
CCGACTTTGCTGCGTTCTTTTACAATCCGCACGGAGGCAAGGAACTGGGC
ATTGTATGGCGGCCACCAACGGAATTCGCTGCAAAGCCATTTAAGGTCAC
AGAGCTGCAGGCATGCAGTCCTTGTGGTAATAAAAAGGTTCAAGTTCTCA
AGGAAACACTGCTCGAGGACTTCAAACTCTTACTGAAAGATTTCTACCTG
CGCATCGCCACACCAGAGGAGCTCAAACGGGAACAGCGCGAGCATCAGAA
GCCCATGCGGTACTTTGATGCCAACAAGGCAGAGGAGGAGTCGAAGCCAA
AGCCGAAAAAGCATAGGCAACGCAAGGGCACCGGGAAAAAAGCACTACCC
AAAAGGAAACGCCTAATAAAAAGCTCAACCCTTAAGGTCTTGAAATAGAA
GCTTTCTAGACCAT

BS15468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Mat89Ba-RA 3582 CG12785-PA 1..3582 17..3598 17910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mat89Ba-RA 3797 CG12785-RA 82..3663 17..3598 17910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16270860..16272240 1435..55 6905 100 Minus
3R 32079331 3R 16269400..16270640 2786..1546 6205 100 Minus
3R 32079331 3R 16268463..16268870 3598..3191 2040 100 Minus
3R 32079331 3R 16268937..16269341 3190..2786 2025 100 Minus
3R 32079331 3R 16270696..16270807 1546..1435 560 100 Minus
3R 32079331 3R 16272294..16272334 57..17 205 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:46:10 has no hits.

BS15468.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:00 Download gff for BS15468.complete
Subject Subject Range Query Range Percent Splice Strand
CG12785-RA 69..3652 17..3604 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:00 Download gff for BS15468.complete
Subject Subject Range Query Range Percent Splice Strand
Mat89Ba-RA 82..3657 17..3592 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:35 Download gff for BS15468.complete
Subject Subject Range Query Range Percent Splice Strand
CG12785-RA 69..3644 17..3592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:07 Download gff for BS15468.complete
Subject Subject Range Query Range Percent Splice Strand
Mat89Ba-RA 82..3657 17..3592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:07 Download gff for BS15468.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16268469..16268870 3191..3592 100 <- Minus
3R 16268937..16269340 2787..3190 100 <- Minus
3R 16269400..16270640 1546..2786 100 <- Minus
3R 16270697..16270807 1435..1545 100 <- Minus
3R 16270861..16272239 56..1434 100 <- Minus
3R 16272296..16272334 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:00 Download gff for BS15468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12094191..12094592 3191..3592 100 <- Minus
arm_3R 12094659..12095062 2787..3190 100 <- Minus
arm_3R 12095122..12096362 1546..2786 100 <- Minus
arm_3R 12096419..12096529 1435..1545 100 <- Minus
arm_3R 12096583..12097961 56..1434 100 <- Minus
arm_3R 12098018..12098056 17..55 100   Minus

BS15468.pep Sequence

Translation from 16 to 3597

> BS15468.pep
MRFVQGNIMPGKLVGSPKGAARTGTQAIAHAGDHSDLDEPKPKIAKSDPP
STAIPKKNNFKQREGTKNVKPPTLEEMKELRDTQNLFHSNLFKLQVKEML
EELQLKQKYTDFIENWLESFTAFTRQLKDGLMERTHLEVPMKLSEKPTGF
VFSKPTREPYLIGAAATGTLLGPKIVVDVALEMPKESLHKEDYLNLRYDQ
KRALYLTYVTERMMESPDYAEDQFNFNYYANNPLKPVLELIPVTKQVNKH
LQVRLFITAPLSSFKPGRFVPWNNNIRPSFYGDEWDEKDPLPSTQHYNAN
VLFDLTLSENQAQLDKAFKSRRNFQDGLLLLKVWLRQRQLDIGYSGFGAH
ILAAFIVYLNTQRILHQSSSSYQVARTVWNQLANTDWTKGISLSVAPIQT
EELNKFAEHYDVCFIDFTGQHNLCANIPLYLYQRVREEAKLAVELLNDMK
LNSFPLIFMQKCPLYSRVDNILKISNYSCINQMLTLHSHPRIKYDFANYG
YPQLLHLLTELLKKGLAERVHSILPLETATAAWPVEKKAPVIGKYIQLGL
ILQPEHAYQVLNKGPAANDDHEGAEEFRRFWGEKSNLRRFQDGSITEAVV
WGTAQDSPAKKRLIVRQIVLHLLEHHLQLDSKEVQYIGGELDQVYQLSPW
FKVNKLKTKLPLGQDTDAEALSPHVIRCYDELARQLHGLNDLPLEIVSIS
GVSPIFRYCEPQPVLPQALLVENRILASSIQRVVIQLGQSGKWPTELGAL
RALKTAFLIEIGEKLEAQCRLHWVMSADGLLVLKQGYCFLIELAHNKELA
LLKQEVTERGITTYIDNAASRSLERQHYILPKVSGALHSLHQTYSAFGST
VLLAKRWLATQLLDDGLWPDMATELLVAHLFQQRYAPQSIAAPQTGFIRF
LQLLSHSDFNGELFLLNFNNSWQEQQIADLEHNYRSNRQSYPPLAVATSY
DMQHAGRLWTSDQSPSQRVLGHVTRLARHALEIIETSLMSKDLRFVRPAQ
LFRASNEGYDLVIQFKPDLVPNSLSYDLGSPFVSFSQPNFSLPRAGSDYI
ARIVGLLRSAYSDFAAFFYNPHGGKELGIVWRPPTEFAAKPFKVTELQAC
SPCGNKKVQVLKETLLEDFKLLLKDFYLRIATPEELKREQREHQKPMRYF
DANKAEEESKPKPKKHRQRKGTGKKALPKRKRLIKSSTLKVLK*

BS15468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mat89Ba-PA 1193 CG12785-PA 1..1193 1..1193 6222 100 Plus