Clone BS15469 Report

Search the DGRC for BS15469

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCul3-RC
Protein status:BS15469.pep: full length peptide match
Sequenced Size:2354

Clone Sequence Records

BS15469.complete Sequence

2354 bp assembled on 2009-12-07

GenBank Submission: KX803579

> BS15469.complete
GAAGTTATCAGTCGACATGAATCTGCGGGGAAATCCTCCCAAGAAGGAGG
GCAAAATGCGCATTCGGGCCTTTCCGGCCTCCATGGACGAGAAGTACGTG
GAGACCATTTGGGCCAGCTTAAAGAATGCTATCCAGGAGATACAGAAAAA
GAACAACTCCGGACTATCGTTTGAACAACTCTACCGGAATGCGTACAACA
TGGTGCTGCATAAGCACGGCAATAGACTGTATTACGGTCTGAGGGAGGTC
GTCTCAGAACACCTGGAGCACAAGGTGCGGGCGGATGTGCTGGAGGCTCT
GCACAGCAATTTCCTACCCAAGTTAAACCAGGCCTGGACAGACCACCAGA
CATCTATGGTGATGATCCGCGACATACTCATGTACATGGATAGAGTTTAT
GTGCAGCAGCGCGAGGTAGACAATGTGTACAATTTGGGATTAATTTTGTT
CAGGGATCAGGTGGTTCGCTATTCTGAGATTCAAAAGGCCCTGCGAGAGA
AGTTGCTGGGCATGGTGATGGAGGAACGTCATGGCGAAGCCATTAACCAT
CTGGCTATCAAGAATGCTTGCAGTATGCTGATCACCCTGGGGATTAACTC
GCGCACTGTCTACGAAGAGGACTTTGAAAAGCCCTTCCTTGCGCAATCGG
CGGCGTTTTACAAATTCGAGTCGCAGAACTTTCTTGCCGAGAACAACGCT
GGCGTTTACATCAAGAAAGTGGAAGCGCGCATCACGGAGGAATCTTCCCG
GGCAGCGCTGTATCTCGATAAGGATACGGAGCCCCGCATTGTGCGCGTGG
TCGAAGAAGAGCTGATCAAAAAGCACATGCGACCCATTGTTGAAATGGAG
AACTCGGGCGTGGTGTACATGATCAAGAACTCAAAGACCGAGGATCTGGC
CTGCACATATAAGCTTTTCTCGCGCCTGAAGGAGGAGGGTCTCAAGGTGA
TAGCGGACACAATGTCGGCATATCTGCGAGAGCAAGGACGCATGCTGGTT
AAGGAAGAAGAAAACGGCAACACGAATCCCATAACATTCGTGCAGAACTT
GCTGGATCTCAAGGACCGCTTCGACCAGTTTCTGGTGCACTCGTTCGCCA
ACGATCGCATATTCAAAAACGTCATCTCATCCGATTTTGAACATTTCTTG
AACCTAAATAACAAATCCCCGGAGTATCTATCGCTATTCATCGATGACAA
ACTGAAAAAGGGTGGCAAGGGAATGAGCGAACAGGAAATTGAGTCCATCT
TGGATAAGACAATGGTTCTCTTCCGTTTCCTATTGGAGAAAGATGTCTTT
GAGCGCTATTACAAGACGCATTTAGCCAAGAGATTGCTGCTGAACAAATC
AGTCTCTGATGATTTCGAGAAGAATATGATATCAAAACTAAAGACTGAAT
GCGGCTGTCAATTCACCTCGAAGCTAGAGGGCATGTTTAAAGATATGTCA
GTCTCCAATACGATCATGGATGAGTTTAAGAACTTTGTAAATAATAACAA
TTTATCCCTTGGCGGTGTGGAGCTAACGGTACGCATACTAACCACTGGTT
TTTGGCCCACACAGACAGCAACTCCGAACTGCAATATACCCGCCGCTCCG
CGTGAAGCCTTTGACATTTTCAAGAACTTCTATCTAAATAAGCACTCAGG
ACGTCAATTGACGTTACAGCCACAAATGGGAACCGCCTATATCAACGCTG
TGTTTTATGGCCGCAAGGCAGTTGAAAGTGAAAAGGATAAAGATGCACCC
AGCTCCAGTTCAAGCGGCTGTGGGGTGCCCACCACCACACGCAAGCACAT
ATTGCAAGTGTCCACGTACCAGATGTGTGTGCTACTGCTGTTTAATAACC
GCGACGTGCTCACCTACGATGACATACACCAGGAGACCGATATACCGGAA
CGGGAGCTCGTCCGAGCACTACAATCGTTGTCCATGGGCAAACCCGCTCA
GCGTTTGTTAGTACGCAATTCTAAAACGAAAACTAAGGACATTGAGCCCA
CGGATGAGTTTTACGTAAACGACGCCTTCAACTCCAAGTTCCACAGGGTG
AAGATACAAACGGTAGCCGCCAAGGGAGAATCAGAGCCAGAGCGTAAGGA
AACGCGCGGAAAGGTCGACGAGGATCGTAAGCACGAGATCGAAGCGGCTA
TTGTGCGCATAATGAAGGCCCGCAAGCGTCTGGCTCACAACTTGCTAGTA
TCAGATGTGACGTCGCAGCTAAAGTCGCGTTTCTTGCCCTCGCCCGTGTT
TATCAAAAAGCGCATTGAGGGCCTAATCGAGCGCGAGTATCTGCAACGAT
CGCCGGAAGATCGCAAAGTGTACAACTACTTGGCCTAAAAGCTTTCTAGA
CCAT

BS15469.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RE 2322 CG42616-PE 1..2322 17..2338 11610 100 Plus
Cul3-RC 2322 CG42616-PC 1..2322 17..2338 11610 100 Plus
Cul3-RD 2322 CG42616-PD 1..2322 17..2338 11610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RE 3272 CG11861-RB 605..2927 16..2338 11615 100 Plus
Cul3-RC 3037 CG11861-RA 370..2692 16..2338 11615 100 Plus
Cul3-RD 4332 CG11861-RC 881..3203 16..2338 11615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15267991..15268760 1227..458 3835 99.9 Minus
2L 23513712 2L 15268819..15269205 462..76 1935 100 Minus
2L 23513712 2L 15266795..15267021 2047..1821 1135 100 Minus
2L 23513712 2L 15267530..15267702 1564..1392 865 100 Minus
2L 23513712 2L 15267763..15267933 1393..1223 855 100 Minus
2L 23513712 2L 15266374..15266526 2338..2186 765 100 Minus
2L 23513712 2L 15267145..15267292 1822..1675 725 99.3 Minus
2L 23513712 2L 15266596..15266736 2185..2045 705 100 Minus
2L 23513712 2L 15267352..15267471 1680..1561 600 100 Minus
2L 23513712 2L 15270904..15270965 77..16 310 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:41:04 has no hits.

BS15469.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:08 Download gff for BS15469.complete
Subject Subject Range Query Range Percent Splice Strand
gft-RB 1..2322 17..2338 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:29 Download gff for BS15469.complete
Subject Subject Range Query Range Percent Splice Strand
gft-RB 606..2925 17..2336 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:40 Download gff for BS15469.complete
Subject Subject Range Query Range Percent Splice Strand
Cul-3-RD 882..3201 17..2336 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:10 Download gff for BS15469.complete
Subject Subject Range Query Range Percent Splice Strand
gft-RB 606..2925 17..2336 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:26 Download gff for BS15469.complete
Subject Subject Range Query Range Percent Splice Strand
Cul3-RD 882..3201 17..2336 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:26 Download gff for BS15469.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15266796..15267019 1823..2046 100 <- Minus
2L 15267145..15267287 1680..1822 100 <- Minus
2L 15267353..15267467 1565..1679 100 <- Minus
2L 15267530..15267700 1394..1564 100 <- Minus
2L 15267763..15267933 1223..1393 100 <- Minus
2L 15266596..15266734 2047..2185 100 <- Minus
2L 15266376..15266526 2186..2336 100 <- Minus
2L 15267996..15268757 461..1222 100 <- Minus
2L 15268821..15269204 77..460 100 <- Minus
2L 15270905..15270964 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:40 Download gff for BS15469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15266596..15266734 2047..2185 100 <- Minus
arm_2L 15266796..15267019 1823..2046 100 <- Minus
arm_2L 15267530..15267700 1394..1564 100 <- Minus
arm_2L 15267145..15267287 1680..1822 100 <- Minus
arm_2L 15266376..15266526 2186..2336 100 <- Minus
arm_2L 15267353..15267467 1565..1679 100 <- Minus
arm_2L 15267763..15267933 1223..1393 100 <- Minus
arm_2L 15267996..15268757 461..1222 100 <- Minus
arm_2L 15268821..15269204 77..460 100 <- Minus
arm_2L 15270905..15270964 17..76 100   Minus

BS15469.3prime Sequence

836 bp (806 high quality bases) assembled on 2006-12-21

> BS15469.3prime
ATGGTCTAGAAAGCTTTTACGCCAAGTAGTTGTACACTTTGCGATCTTCC
GGCGATCGTTGCAGATACTCGCGCTCGATTAGGCCCTCAATGCGCTTTTT
GATAAACACGGGCGAGGGCAAGAAACGCGACTTTAGCTGCGACGTCACAT
CTGATACTAGCAAGTTGTGAGCCAGACGCTTGCGGGCCTTCATTATGCGC
ACAATAGCCGCTTCGATCTCGTGCTTACGATCCTCGTCGACCTTTCCGCG
CGTTTCCTTACGCTCTGGCTCTGATTCTCCCTTGGCGGCTACCGTTTGTA
TCTTCACCCTGTGGAACTTGGAGTTGAAGGCGTCGTTTACGTAAAACTCA
TCCGTGGGCTCAATGTCCTTAGTTTTCGTTTTAGAATTGCGTACTAACAA
ACGCTGAGCGGGTTTGCCCATGGACAACGATTGTAGTGCTCGGACGAGCT
CCCGTTCCGGTATATCGGTCTCCTGGTGTATGTCATCGTAGGTGAGCACG
TCGCGGTTATTAAACAGCAGTAGCACACACATCTGGTACGTGGACACTTG
CAATATGTGCTTGCGTGTGGTGGTGGGCACCCCACAGCCGCTTGAACTGG
AGCTGGGTGCATCTTTATCCTTTTCACTTTCAACTGCCTTGCGGCCATAA
AACACAGCGTTGATATAGGCGGTTCCCATTTGTGGCTGTAACGTCAATTG
ACGTCCTGAGTGCTTATTTAGATAGAAGTTCTTGAAAATGTCAAAGGCTT
CACGCGGAGCGGCGGGTATATTGCAGTTCGGAGTTGCTGTCTGTGTGGGC
CAAAAACCAGTGGGTAGTATGCGTACCGTTAGCTCC

BS15469.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11861-PC 2322 gft-RC 1503..2318 836..21 4055 99.8 Minus
CG11861-PA 2322 gft-RA 1503..2318 836..21 4055 99.8 Minus
CG11861-PB 2322 gft-RB 1503..2318 836..21 4055 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RF 3558 CG42615-RF 2394..3213 836..17 4070 99.8 Minus
Cul3-RE 3272 CG11861-RB 2108..2927 836..17 4070 99.8 Minus
Cul3-RC 3037 CG11861-RA 1873..2692 836..17 4070 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15266795..15267021 308..534 1135 100 Plus
2L 23513712 2L 15266374..15266526 17..169 750 99.3 Plus
2L 23513712 2L 15267145..15267292 533..680 725 99.3 Plus
2L 23513712 2L 15266596..15266736 170..310 705 100 Plus
2L 23513712 2L 15267352..15267471 675..794 600 100 Plus
2L 23513712 2L 15267530..15267575 791..836 215 97.8 Plus
Blast to na_te.dros performed on 2015-02-11 08:03:44 has no hits.

BS15469.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:47 Download gff for BS15469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-PC 1503..2322 17..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:01 Download gff for BS15469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-PB 1503..2322 17..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:17:17 Download gff for BS15469.3prime
Subject Subject Range Query Range Percent Splice Strand
Cul-3-RC 1873..2694 13..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:31 Download gff for BS15469.3prime
Subject Subject Range Query Range Percent Splice Strand
Cul3-RC 1873..2694 13..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:31 Download gff for BS15469.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15267145..15267287 533..675 100 <- Plus
2L 15267353..15267467 676..790 100 <- Plus
2L 15267530..15267575 791..836 97   Plus
2L 15266372..15266526 13..169 98 <- Plus
2L 15266596..15266734 170..308 100 <- Plus
2L 15266796..15267019 309..532 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:17:17 Download gff for BS15469.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15266596..15266734 170..308 100 <- Plus
arm_2L 15266796..15267019 309..532 100 <- Plus
arm_2L 15266372..15266526 13..169 98 <- Plus
arm_2L 15267145..15267287 533..675 100 <- Plus
arm_2L 15267353..15267467 676..790 100 <- Plus
arm_2L 15267530..15267575 791..836 97   Plus

BS15469.5prime Sequence

843 bp (737 high quality bases) assembled on 2006-12-21

> BS15469.5prime
GAAGTTATCCCTCGACATGAATCTGCGGGGAAATCCTCCCAAGAAGGAGG
GCAAAATGCGCATTCGGGCCTTTCCGGCCTCCATGGACGAGAAGTACGTG
GAGACCATTTGGGCCAGCTTAAAGAATGCTATCCAGGAGATACAGAAAAA
GAACAACTCCGGACTATCGTTTGAACAACTCTACCGGAATGCGTACAACA
TGGTGCTGCATAAGCACGGCAATAGACTGTATTACGGTCTGAGGGAGGTC
GTCTCAGAACACCTGGAGCACAAGGTGCGGGCGGATGTGCTGGAGGCTCT
GCACAGCAATTTCCTACCCAAGTTAAACCAGGCCTGGACAGACCACCAGA
CATCTATGGTGATGATCCGCGACATACTCATGTACATGGATAGAGTTTAT
GTGCAGCAGCGCGAGGTAGACAATGTGTACAATTTGGGATTAATTTTGTT
CAGGGATCAGGTGGTTCGCTATTCTGAGATTCAAAAGGCCCTGCGAGAGA
AGTTGCTGGGCATGGTGATGGAGGAACGTCATGGCGAAGCCATTAACCAT
CTGGCTATCAAGAATGCTTGCAGTATGCTGATCACCCTGGGGATTAACTC
GCGCACTGTCTACGAAGAGGACTTTGAAAAGCCCTTCCTTGCGCAATCGG
CGGCGTTTTACAAATTCGAGTCGCAGAACTTTCTTGCCGAGAACAACGCT
GGCGTTTACATCAAGAAAGTGGAAGCGCGCATCACGGAGGAATCTTCCCG
GGCAGCGCTGTATCTCGATAAAGATACGGAGCCCCGCATTGTGCGCGTGG
TCGAAGAAGAGCTGATCAAAAAGCACATGCGACCCATTGTTGA

BS15469.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11861-PC 2322 gft-RC 1..827 17..843 4110 99.8 Plus
CG11861-PA 2322 gft-RA 1..827 17..843 4110 99.8 Plus
CG11861-PB 2322 gft-RB 1..827 17..843 4110 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-RE 3272 CG11861-RB 605..1432 16..843 4125 99.9 Plus
Cul3-RC 3037 CG11861-RA 370..1197 16..843 4125 99.9 Plus
Cul3-RD 4332 CG11861-RC 881..1708 16..843 4125 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15268819..15269205 462..76 1935 100 Minus
2L 23513712 2L 15268375..15268760 843..458 1915 99.7 Minus
2L 23513712 2L 15270904..15270965 77..16 310 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:03:41 has no hits.

BS15469.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:48 Download gff for BS15469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-PC 1..826 17..842 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:03 Download gff for BS15469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11861-PB 1..826 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:23:59 Download gff for BS15469.5prime
Subject Subject Range Query Range Percent Splice Strand
Cul-3-RD 881..1707 16..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:25 Download gff for BS15469.5prime
Subject Subject Range Query Range Percent Splice Strand
Cul3-RD 881..1707 16..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:25 Download gff for BS15469.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15268376..15268757 461..842 99 <- Minus
2L 15268821..15269204 77..460 100 <- Minus
2L 15270905..15270965 16..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:23:59 Download gff for BS15469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15268376..15268757 461..842 99 <- Minus
arm_2L 15268821..15269204 77..460 100 <- Minus
arm_2L 15270905..15270965 16..76 100   Minus

BS15469.pep Sequence

Translation from 16 to 2337

> BS15469.pep
MNLRGNPPKKEGKMRIRAFPASMDEKYVETIWASLKNAIQEIQKKNNSGL
SFEQLYRNAYNMVLHKHGNRLYYGLREVVSEHLEHKVRADVLEALHSNFL
PKLNQAWTDHQTSMVMIRDILMYMDRVYVQQREVDNVYNLGLILFRDQVV
RYSEIQKALREKLLGMVMEERHGEAINHLAIKNACSMLITLGINSRTVYE
EDFEKPFLAQSAAFYKFESQNFLAENNAGVYIKKVEARITEESSRAALYL
DKDTEPRIVRVVEEELIKKHMRPIVEMENSGVVYMIKNSKTEDLACTYKL
FSRLKEEGLKVIADTMSAYLREQGRMLVKEEENGNTNPITFVQNLLDLKD
RFDQFLVHSFANDRIFKNVISSDFEHFLNLNNKSPEYLSLFIDDKLKKGG
KGMSEQEIESILDKTMVLFRFLLEKDVFERYYKTHLAKRLLLNKSVSDDF
EKNMISKLKTECGCQFTSKLEGMFKDMSVSNTIMDEFKNFVNNNNLSLGG
VELTVRILTTGFWPTQTATPNCNIPAAPREAFDIFKNFYLNKHSGRQLTL
QPQMGTAYINAVFYGRKAVESEKDKDAPSSSSSGCGVPTTTRKHILQVST
YQMCVLLLFNNRDVLTYDDIHQETDIPERELVRALQSLSMGKPAQRLLVR
NSKTKTKDIEPTDEFYVNDAFNSKFHRVKIQTVAAKGESEPERKETRGKV
DEDRKHEIEAAIVRIMKARKRLAHNLLVSDVTSQLKSRFLPSPVFIKKRI
EGLIEREYLQRSPEDRKVYNYLA*

BS15469.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cul3-PE 773 CG11861-PB 1..773 1..773 3959 100 Plus
Cul3-PC 773 CG11861-PA 1..773 1..773 3959 100 Plus
Cul3-PD 773 CG11861-PC 1..773 1..773 3959 100 Plus
Cul3-PF 934 CG42615-PF 178..934 17..773 3864 99.9 Plus
Cul4-PB 821 CG8711-PB 112..821 22..773 1159 37 Plus