Clone BS15471 Report

Search the DGRC for BS15471

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG12325-RA
Protein status:BS15471.pep: full length peptide match
Sequenced Size:2882

Clone Sequence Records

BS15471.complete Sequence

2882 bp assembled on 2009-12-07

GenBank Submission: KX803100

> BS15471.complete
GAAGTTATCAGTCCACATGAAGTTTTCCTACAAATTTTCCAACCTGTTGG
GCACAATATATCGTAATGGAAACTTGGTGTTCACACCGGATGGCAATTCC
GTTATCAGTCCGGTTGGCAATAGGATAACGGTCTACGATTTAAAAAACAA
CAAATCGCGCACCTTGTCCCTGGAATCGCGGTATAACTACACGAACATAG
CTCTTTCCCCGGATGGAAGTCTGCTCATCGCAGTCAATGAAAAGGGTGAG
GCGCAGCTCATCAGCATGATGTCCTGTACGGTGATACATCGTCACAAGTT
CCAGACGGGCGTACAGTGCATCTGCTTCAGTCCAAATGGAGCATTCTTTG
CCGTCGCTGTGCAGAACGTAGTGTTGATATTCTGTGCACCTGGTGAGATC
ACAGGGGAGTACAATCCTTTCGTCCTGCGCCGAAGATTCCTAGGTGGATT
CGACGATGTCACTTGGCTGGACTGGTCTTCGGACTCTCGACTTTTGGCAA
TCGGCTGTCGGGATAGCTCCACCAAAATCGTTGCCATCAACTATACAAAG
AACTTCCGCACCTATAACCTAAGTGGCCACACAGACGCCATTGTAGCTTG
TTTTTTCGAGGCAAACAGCTTGCACTTGAACACCATAAGCCGCAATGGTC
AGCTCTGCTTGTGGGAATGCAGCCTAGCTCCCTCGGATTTAGAGGATGCT
GAAAGGCCAAAAATCGCTCCCCCTCAAAGGAAGAAGGAAAAGAAGGCAGT
ATCTGACAATGAGTCAGAAGATGACGTTGAAAATGTAGTGGAAAAGGATG
CGTTGAAGGAGGAATCTACCAAGGAAGCCGAAGATGTCAACCATATAAAA
AATGAGGACGAGACGAAGAGTCACCCCTTCTTTTACAAAAAAATAACTCG
TCATTACTTGGCCGATGAGCCGCGAAAAGAACAGCGGGATGTACAACTGA
CCGCGGCAAACTACAACACTCGTACCAAGGTTTTGGTGGTAGCCTTCAGT
TCCGGAGCTTTCTACCTCTACGAATTGCCCGACGTCAACATGATTCATTC
GCTGAGCATTTCCGACTATCCTATTTCGGCGGCTCTCTTCAACTGCACTG
GTGACTGGGTCGCATTGGCCTCCCGAGAGATTGGCCAACTTCTGGTTTGG
GAGTGGCAAAGCGAGCAATACATAATGAAGCAGCAGGGACACAGCAGCGA
AATGACCTGCATTGCTTACTCCTCGGATGGTCAGTTCATCGCCACTGGCG
GCGAAGACTCCAAGGTGAAGCTCTGGAACACGCAGAGCAGTTTCTGTTTT
GTTACTTTCAGCGAGCACACCAGTGGAGTTACTGGCATACAGTTCAGCAG
GAACAAGAAGTTCCTGGTTAGCAGTTCCCTAGACGGCACAGTGCGTGCTT
TTGATGTCAACAGATACCGCAACTTCAGGACTTTCACCTCACCGAATCCT
GCTCAGTTCTCCTGTGTAGCTGTGGATTACTCTGGCGAGTTAGTTGTGGC
TGGCGGCCAGGACGTATTCGATATCTTCCTGTGGTCAGTTAAAACAGGAA
AGCTGCTGGAGATCATCAGTGGCCATGAGGGACCCGTAGTTTCCATTGCA
TTCTCACCAGTGGCTACTTCATCAACTTTGGTGTCTGGTTCTTGGGACAA
GACCGTCAAGATATGGAACTGCCTGGAGAGCAACAGCGAGCACGAAACTA
TTGATGCTGTTTCAGATGTTACAAATGTTACTTTCAGTCCTAGTGGTGAA
GAGATTGCTGTGGCCACTCTCAGTGGTAATATAACAATTTTCGACATCAA
ATCTGCTGGCCAAGTTACTACTATAGAGGGTCGCAATGATCTGAGCGCAG
GGCGCCTGGAAACCGATATTATAACAGCGAGGAAAAATGCTCAGGCAAAC
TATTTTTCCACCATTGAGTACTCAGCGGATGGAGAGTGCATACTGGCGGC
TGGAAAGTCTGCAAACATATGCATTTACCATGTTAGGGAGGCAATACTTT
TGAAGAAATTTGAGATCACACAAAACCACAGCTTAGATGGCCTTAATGAC
TTTATCAGTCGAAAACATTTAAGTGAATTTGGCAACATGGCTCTTGTGGA
AGAACGAGAAGAGCTGGAGGGCGGCAGGGTGGCTATTCGATTGCCGGGCG
TACAACGGGGAGACATGTCATCCAGGAGATTCCAGCAAGAGGTTAGGGTG
TTCTCCGTAAAGTTCTCACCCACAGGCCAGGCATTTGCGGCTGCTGGCAC
TGAAGGACTATGCATATACGCCTTAGATAAGGGTGTTGTCTTCGATCCCT
TTGATCTCTCGCTGGAAGTTACGCCGAAAGCGGTCCACGAGTCCCTCAAG
CAGCAGAATTACACCAAGGCGTTGGTCATGTCCCTCAAGCTAAACGAGCC
CAATTTGATTGCCCTAGTGCTGGAGCGAGTGCCGTATAAGGACGTCGAAC
TGGTTTGTGCGGATCTGTCGCCGGAGTTTGCCCAGCGACTGTTGCAACAA
TTGGCCCGTCAGCTCCAGTCCACGCCACACATAGAGTTCTATCTGCAATG
GAGCTGCTGTCTGCTGACCAAACACGGAAACCAAGATGGAGTCTTTCAGC
ACACGGGCTTGCTGGCACTGCACGAGGTTCTTTCGAGGAAATACGAAATG
CTTAACAAAATCTGCGACTACAACAAGTACACGTTGAAAGTACTCCTGGA
TAGAGCTGATAAGTTGGAGCAGAAAAACGAGGGCAAACCCAATGCGACGG
AGGAAGATAGTGATGAGGAAATGCTACTTATCAGGTCGAAGGACGACGAA
AATGGACAGGCGCAGTTTAGCGATGAGGAGGAGAGCGACAGCGGATCCGA
AGAAGAGATGGCTTGAAAGCTTTCTAGACCAT

BS15471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12325-RB 2850 CG12325-PB 1..2850 17..2866 14250 100 Plus
CG12325-RA 2850 CG12325-PA 1..2850 17..2866 14250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12325-RB 3410 CG12325-RB 296..3146 17..2867 14255 100 Plus
CG12325-RA 3220 CG12325-RA 106..2956 17..2867 14255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10823939..10825204 148..1413 6330 100 Plus
2R 25286936 2R 10825260..10825602 1411..1753 1715 100 Plus
2R 25286936 2R 10826080..10826316 2048..2284 1185 100 Plus
2R 25286936 2R 10826897..10827114 2444..2661 1090 100 Plus
2R 25286936 2R 10827175..10827380 2662..2867 1030 100 Plus
2R 25286936 2R 10826378..10826540 2282..2444 815 100 Plus
2R 25286936 2R 10825871..10826019 1900..2048 745 100 Plus
2R 25286936 2R 10825666..10825813 1752..1899 740 100 Plus
2R 25286936 2R 10823771..10823883 35..147 565 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:11:02 has no hits.

BS15471.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:38 Download gff for BS15471.complete
Subject Subject Range Query Range Percent Splice Strand
CG12325-RA 101..2949 17..2865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:02 Download gff for BS15471.complete
Subject Subject Range Query Range Percent Splice Strand
CG12325-RA 106..2954 17..2865 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:55 Download gff for BS15471.complete
Subject Subject Range Query Range Percent Splice Strand
CG12325-RA 101..2949 17..2865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:47 Download gff for BS15471.complete
Subject Subject Range Query Range Percent Splice Strand
CG12325-RA 106..2954 17..2865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:47 Download gff for BS15471.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10826898..10827114 2445..2661 100 -> Plus
2R 10827175..10827378 2662..2865 100   Plus
2R 10823700..10823717 17..34 100 -> Plus
2R 10823771..10823883 35..147 100 -> Plus
2R 10823939..10825204 148..1413 100 -> Plus
2R 10825263..10825602 1414..1753 100 -> Plus
2R 10825668..10825813 1754..1899 100 -> Plus
2R 10825871..10826018 1900..2047 100 -> Plus
2R 10826080..10826314 2048..2282 100 -> Plus
2R 10826379..10826540 2283..2444 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:02 Download gff for BS15471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6714403..6714619 2445..2661 100 -> Plus
arm_2R 6714680..6714883 2662..2865 100   Plus
arm_2R 6711205..6711222 17..34 100 -> Plus
arm_2R 6711276..6711388 35..147 100 -> Plus
arm_2R 6711444..6712709 148..1413 100 -> Plus
arm_2R 6712768..6713107 1414..1753 100 -> Plus
arm_2R 6713173..6713318 1754..1899 100 -> Plus
arm_2R 6713376..6713523 1900..2047 100 -> Plus
arm_2R 6713585..6713819 2048..2282 100 -> Plus
arm_2R 6713884..6714045 2283..2444 100 -> Plus

BS15471.3prime Sequence

788 bp (787 high quality bases) assembled on 2006-12-21

> BS15471.3prime
ATGGTCTAGAAAGCTTTCCCCTATCTCTTCTTCGGATCCGCTGTCGCTCT
CCTCCTCATCGCTAAACTGCGCCTGTCCATTTTCGTCGTCCTTCGACCTG
ATAAGTAGCATTTCCTCATCACTATCTTCCTCCGTCGCATTGGGTTTGCC
CTCGTTTTTCTGCTCCAACTTATCAGCTCTATCCAGGAGTACTTTCAACG
TGTACTTGTTGTAGTTCGCAGATTTTGTTAAGCATTTCGTATTTCCTCGA
AAGAACCTCGTGCAGTGCCAGCAAGCCCGTGTGCTGAAAGACTCCATCTT
GGTTTCCGTGTTTGGTCAGCAGACAGCAGCTCCATTGCAGATAGAACTCT
ATGTGTGGCGTGGACTGGAGCTGACGGGCCAATTGTTGCAACAGTCGCTG
GGCAAACTCCGGCGACAGATCCGCACAAACCAGTTCGACGTCCTTATACG
GCACTCGCTCCAGCACTAGGGCAATCAAATTGGGCTCGTTTAGCTTGAGG
GACATGACCAACGCCTTGGTGTAATTCTGCTGCTTGAGGGACTCGTGGAC
CGCTTTCGGCGTAACTTCCAGCGAGAGATCAAAGGGATCGAAGACAACAC
CCTTATCTAAGGCGTATATGCATAGTCCTTCAGTGCCAGCAGCCGCAAAT
GCCTGGCCTGTGGGTGAGAACTTTACGGAGAACACCCTAACCTCTTGCTG
GAATCTCCTGGATGACATGTCTCCCCGTTGTACGCCCGGCAATCGAATAG
CCACCCTGCCGCCCTCCAGCTCTTCTCGTTCTTCCACA

BS15471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12325-PA 2850 CG12325-RA 2079..2651 788..216 2865 100 Minus
CG12325-PA 2850 CG12325-RA 2651..2843 215..23 965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12325-RB 3410 CG12325-RB 2374..3138 788..23 3805 99.9 Minus
CG12325-RA 3220 CG12325-RA 2184..2948 788..23 3805 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10826897..10827114 439..222 1090 100 Minus
2R 25286936 2R 10827180..10827372 215..23 965 100 Minus
2R 25286936 2R 10826127..10826316 788..599 950 100 Minus
2R 25286936 2R 10826378..10826540 601..439 815 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:50:51 has no hits.

BS15471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:51 Download gff for BS15471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12325-PA 2080..2850 17..787 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:06 Download gff for BS15471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12325-PA 2080..2850 17..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:49:08 Download gff for BS15471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12325-RA 2185..2950 20..787 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:25 Download gff for BS15471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12325-RA 2185..2950 20..787 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:25 Download gff for BS15471.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10827175..10827374 20..221 99   Minus
2R 10826128..10826314 601..787 100 -> Minus
2R 10826379..10826540 439..600 100 -> Minus
2R 10826898..10827114 222..438 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:49:08 Download gff for BS15471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6713633..6713819 601..787 100 -> Minus
arm_2R 6713884..6714045 439..600 100 -> Minus
arm_2R 6714403..6714619 222..438 100 -> Minus
arm_2R 6714680..6714879 20..221 99   Minus

BS15471.5prime Sequence

828 bp (732 high quality bases) assembled on 2006-12-21

> BS15471.5prime
GAAGTTATCCTTCGACATGAAGTTTTCCTACAAATTTTCCAACCTGTTGG
GCACAATATATCGTAATGGAAACTTGGTGTTCACACCGGATGGCAATTCC
GTTATCAGTCCGGTTGGCAATAGGATAACGGTCTACGATTTAAAAAACAA
CAAATCGCGCACCTTGTCCCTGGAATCGCGGTATAACTACACGAACATAG
CTCTTTCCCCGGATGGAAGTCTGCTCATCGCAGTCAATGAAAAGGGTGAG
GCGCAGCTCATCAGCATGATGTCCTGTACGGTGATACATCGTCACAAGTT
CCAGACGGGCGTACAGTGCATCTGCTTCAGTCCAAATGGAGCATTCTTTG
CCGTCGCTGTGCAGAACGTAGTGTTGATATTCTGTGCACCTGGTGAGATC
ACAGGGGAGTACAATCCTTTCGTCCTGCGCCGAAGATTCCTAGGTGGATT
CGACGATGTCACTTGGCTGGACTGGTCTTCGGACTCTCGACTTTTGGCAA
TCGGCTGTCGGGATAGCTCCACCAAAATCGTTGCCATCAACTATACAAAG
AACTTCCGCACCTATAACCTAAGTGGCCACACAGACGCCATTGTAGCTTG
TTTTTTCGAGGCAAACAGCTTGCACTTGAACACCATAAGCCGCAATGGTC
AGCTCTGCTTGTGGGAATGCAGCCTAGCTCCCTCGGATTTAGAGGATGCT
GAAAGGCCAAAAATCGCTCCCCCTCAAAGGAAGAANGAAAAGAANGCAGT
ATCTGACAATGAGTCAGAAGATGACGTTGAAAATGTAGTGAAAAAGGATG
CGTTGAANGAGGAATCTACCAAGGAAGC

BS15471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12325-PA 2850 CG12325-RA 1..812 17..828 3978 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12325-RB 3410 CG12325-RB 296..1107 17..828 4012 99.5 Plus
CG12325-RA 3220 CG12325-RA 106..917 17..828 4012 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10823939..10824619 148..828 3357 99.4 Plus
2R 25286936 2R 10823771..10823883 35..147 565 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:57:40 has no hits.

BS15471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:03 Download gff for BS15471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12325-PA 1..812 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:55:20 Download gff for BS15471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12325-RA 99..917 9..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:12:04 Download gff for BS15471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12325-RA 99..917 9..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:12:04 Download gff for BS15471.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10823771..10823883 35..147 100 -> Plus
2R 10823939..10824619 148..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:55:20 Download gff for BS15471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6711276..6711388 35..147 100 -> Plus
arm_2R 6711444..6712124 148..828 99   Plus

BS15471.pep Sequence

Translation from 16 to 2865

> BS15471.pep
MKFSYKFSNLLGTIYRNGNLVFTPDGNSVISPVGNRITVYDLKNNKSRTL
SLESRYNYTNIALSPDGSLLIAVNEKGEAQLISMMSCTVIHRHKFQTGVQ
CICFSPNGAFFAVAVQNVVLIFCAPGEITGEYNPFVLRRRFLGGFDDVTW
LDWSSDSRLLAIGCRDSSTKIVAINYTKNFRTYNLSGHTDAIVACFFEAN
SLHLNTISRNGQLCLWECSLAPSDLEDAERPKIAPPQRKKEKKAVSDNES
EDDVENVVEKDALKEESTKEAEDVNHIKNEDETKSHPFFYKKITRHYLAD
EPRKEQRDVQLTAANYNTRTKVLVVAFSSGAFYLYELPDVNMIHSLSISD
YPISAALFNCTGDWVALASREIGQLLVWEWQSEQYIMKQQGHSSEMTCIA
YSSDGQFIATGGEDSKVKLWNTQSSFCFVTFSEHTSGVTGIQFSRNKKFL
VSSSLDGTVRAFDVNRYRNFRTFTSPNPAQFSCVAVDYSGELVVAGGQDV
FDIFLWSVKTGKLLEIISGHEGPVVSIAFSPVATSSTLVSGSWDKTVKIW
NCLESNSEHETIDAVSDVTNVTFSPSGEEIAVATLSGNITIFDIKSAGQV
TTIEGRNDLSAGRLETDIITARKNAQANYFSTIEYSADGECILAAGKSAN
ICIYHVREAILLKKFEITQNHSLDGLNDFISRKHLSEFGNMALVEEREEL
EGGRVAIRLPGVQRGDMSSRRFQQEVRVFSVKFSPTGQAFAAAGTEGLCI
YALDKGVVFDPFDLSLEVTPKAVHESLKQQNYTKALVMSLKLNEPNLIAL
VLERVPYKDVELVCADLSPEFAQRLLQQLARQLQSTPHIEFYLQWSCCLL
TKHGNQDGVFQHTGLLALHEVLSRKYEMLNKICDYNKYTLKVLLDRADKL
EQKNEGKPNATEEDSDEEMLLIRSKDDENGQAQFSDEEESDSGSEEEMA*

BS15471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12325-PB 949 CG12325-PB 1..949 1..949 4911 100 Plus
CG12325-PA 949 CG12325-PA 1..949 1..949 4911 100 Plus
wds-PB 361 CG17437-PB 70..284 391..608 245 26.5 Plus
wds-PA 361 CG17437-PA 70..284 391..608 245 26.5 Plus
Taf5-PA 704 CG7704-PA 448..646 391..593 240 29.6 Plus
wds-PB 361 CG17437-PB 113..354 344..591 227 27.6 Plus
wds-PA 361 CG17437-PA 113..354 344..591 227 27.6 Plus
wds-PB 361 CG17437-PB 60..329 338..608 212 23.8 Plus
wds-PA 361 CG17437-PA 60..329 338..608 212 23.8 Plus
wds-PB 361 CG17437-PB 122..357 316..550 207 20.1 Plus
wds-PA 361 CG17437-PA 122..357 316..550 207 20.1 Plus