Clone BS15476 Report

Search the DGRC for BS15476

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptmib2-RA
Protein status:BS15476.pep: full length peptide match
Sequenced Size:3182

Clone Sequence Records

BS15476.complete Sequence

3182 bp assembled on 2009-12-07

GenBank Submission: KX803391

> BS15476.complete
GAAGTTATCAGTCGACATGCGAGCCTCCATTCCGCCCGGCATTCGAGTGG
TGCGCGGACCCAACTGGATCTGGTCGAATCAAGACGACGGAGAAGGTCAC
GTTGGAACCGTTTGCGAAATCGGACGTTGCGGATCGACACATTCGCCAGA
AAACACTGTCGTGGTCAACTGGGATTCCGGACACCGGACCAACTACCGTG
TGGGCTACCAAAACCAGTACGACTTGATAATTGTAGATAATGCTCAAGTT
GGAGTTCGTCACTCAAATGTTGTCTGCGATGGCTGTTCCAAGGCGGGTAT
CGCTGGCATAGTATTCAAGTGCGCCCAGTGTCCCAACTATCACCTATGCG
CCTATTGCTACGCAGAGGATCTGCACGATATTGAGCACCCGTTTATCCGC
TACACGACTCCCAACTCGCTGGGCGTGAGATTGCCCATGAGAAAAGGTGC
CAAGCGCATCCAGCTGCGAGGCATCTTTGTGGGTTCCAAAGTAGTGCGCG
GTCCTGACTGGGAGTGGAACGAACAGGACGGCGGAGAAGGCAGGACGGGT
CGGGTAATGGAAATCCGAGGCTGGGACAACGAATCGTGTCGCAGCGTGGC
CAACGTAGCGTGGGTAACCGGATCGACGAACGTCTACCGTCTAGGTCACA
AGGGAAACGTTGACCTCAAGTACATTACTGCCACGTGCGGTGGTCACTAC
TATAAGGACCACATGCCTGTTCTAGGTCAGACAGAGGAGTTGCAGCCGGT
GGCGCCCATGGTGAAGCCAAGCTTTTCCGTGGGCGACCGCGTCAAGGTTT
GCCTAGAGGTTGACGCCCTAATGAAATTGCAGCAGGGCCATGGCGGATGG
AATCCGCGCATGGTCGAGCATTTGTCCAAACTGGGCACAGTACACCGCAT
CACGGACAAGGGGGATATACGTGTTCAGTATGAAAACTGTCCCAATCGAT
GGACCTTTCATCCCGCCGCACTCGTTAAGGTTGTCTCTTTTCGTGTCGGT
GACCTGGTCACCATCATCAACGATGCCAACAAAGTGCAGCAGCTGCAGAA
GGGTCACGGCGAATGGATAGAAATCATGCGACACGCCCTTGGAAAAATTT
GCAAGGTAGTGAAGGTGTACTCGGACGGTGACCTCCGCATCCAGCAGTTG
GACGACGGCTTCGAGTGGACCCTGAATCCGAAATGTGTCAAACTAGAGCG
TTCTCCTTTGGCAACAGCAGCTGAGCGCTCTAACAGTATGATGGACCTAA
GCCACCGACGCGCTGACCATGTAATGACACCGCTCTCTGGCCTCTCCGGT
AGTTCGGTTGCCGACAAGCTGGTGCGCGAGGCTGCCCAGGGCCATTTGGA
TTTCGTGCGGCAGTACCTGGACGTGAATCCCAGCCAGGTGGATGTGATGA
GTGGCGGCAAGGCTTGTATTCAGGTGGCCTCTCATCAGGGCTACGTCGAT
CTTGTCAGCTACCTCATCTCCAAGGGTGCCAACGTGAATGCGGTCGACAA
GGAAGGTGATTCAGCTCTGCACTACGCAGCCTTCGGCAATCAGCCGGCCA
CCATGAGAGTGCTGCTGCAGCACGGTGCTGAGGTGAACTTCCTAAACTCG
AGCCACTGCTCTGCACTGCACATCTGCGCGCACAAGAAAACGCCGCACTG
TGTGCGTGAGTTGCTGCAGCACAATGCCAACGTAAACATTCAGGATTCGT
ACGGGGATACGGCGCTTCACGACGCAATCGGCAAAGAGAATACGGAAGTT
GTGGAGTTGCTTTGTAATGCTCCGAATCTGGACTTTACGGTTAAGAATAA
TCGCGGCTTTAACGTGCTACACCATGCAGCGCTTAAAGGAAACGTGGTAG
CTGCTCGCCGTATCCTGTTGCTCTCCCGCCAGCTGGTCAATGTGCGCAAA
GACGATGGCTTTGCGGCTCTTCATTTGGCAGCCCTTAACGGTCATGCCCA
GGTTGTGGAAACGCTGGTCACTGAGGGCCAAGCGGAGTTAGATATACGCA
ATAATCGCCAACAGACGCCGTTCCTACTGGCCGTCTCCCAGGGCCATGCC
GGGGTAATCGAGCGACTCGTTCGCCTCTCCTGCGACGTGAATGCCAAGGA
TGAGGATGGCGACAATGCGATGCACTTGTGCGTCATTAAGAAGTCCAATC
TGCAGTCGGCCGCGGAGCCTCAGCCAGAGGAGGCTCCTGAGATTCACAAG
TTTTACCTGAGTCTAGTACACTCGAGCATTCGTCCTGAGGATCGTTTGAT
GTACAGTATATTGATCTATCTTTCGAGGGCCGGCTGCCGAGTGGAGCTGA
ACAACGCCAATGCAAGCATTTTTGAGTGGATAACGGACCGCCACATCAGG
CAACTGATTTTTGGGCAGCAGGGCGAAGCTGAATCGCTGCCTAGGAATCT
TCAAGCTTTGGAAGTGTCCGCAGGATCAGCCGACGGTGAGGAGAGCTCTG
CGTCTGCTGGAGCTGAATCCAATGGAGCCGGACCTGGAAGCGTTGCAGCA
CCCCCACCACCGCAGCGCCAGACATTTGAACTAATGCCAAAGCCAAACGA
TATCCCAGCCATTGGAGTTGGAGCATCTCCATCCACGCCCTCCGCCTCGC
CGGGCGTAAAGAAACTGAACTCCGACGCAACACCGCAAAACGTCTCTCCA
CAGGTGGCACCGCGCAAGAAGGCGCCCAAGCCTCCGGTTACCACTAGCTC
GAGCAGTACCGCGTTGGAAGCCGGAGCGGCGGGACCCAGTACCAGTCCGG
TGATCGTCCCCGGTCCCCATGAGTGCATTGTGTGCAATGAGATCCTGCCG
ATGGTGCGCTTTGAGCCGTGTCAGCATCAGATCGCCTGCGAGGAGTGCGG
CATCCGAATGAAAAAGTGTCTCCGCTGTGCCGTGGCGATCGAGCGGCGAT
TGACGGTCAGCGGCCGAGTGGTGGCCCTGCCCACGTCCACGTCGTCACCT
AGTGACCCCACTCGCCTACCGTCCGGGGATCTACTTCGCTATCTGGAGAA
CAAAGTGCTGGAGTTTGAGGAGTCGCACTTCTGCGGTATTTGCATGGAGC
GAAAAAGGGATGTGGCCTTCCTGTGCGGGCACGGCGCGTGCTCCCATTGT
GCCGAAACGCTCCGCACATGCCACATGTGTCGCAAGACAATACTCAAGAA
GATCAACCTGTACTGAAAGCTTTCTAGACCAT

BS15476.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-RC 3150 CG17492-PC 1..3150 17..3166 15750 100 Plus
mib2-RB 3150 CG17492-PB 1..3150 17..3166 15750 100 Plus
mib2-RA 3150 CG17492-PA 1..3150 17..3166 15750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-RC 3805 CG17492-RC 236..3387 16..3167 15760 100 Plus
mib2-RB 3899 CG17492-RB 398..3549 16..3167 15760 100 Plus
mib2-RA 4164 CG17492-RA 595..3746 16..3167 15760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19039041..19041123 1085..3167 10415 100 Plus
2L 23513712 2L 19038084..19038754 251..921 3355 100 Plus
2L 23513712 2L 19037802..19037972 82..252 855 100 Plus
2L 23513712 2L 19038815..19038979 921..1085 825 100 Plus
2L 23513712 2L 19035798..19035865 16..83 340 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:36:55 has no hits.

BS15476.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:09 Download gff for BS15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 1..3150 17..3166 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:52 Download gff for BS15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 520..3668 17..3165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:46 Download gff for BS15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 596..3744 17..3165 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:55 Download gff for BS15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 520..3668 17..3165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:46 Download gff for BS15476.complete
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 596..3744 17..3165 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:46 Download gff for BS15476.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19035799..19035865 17..83 100 -> Plus
2L 19037804..19037971 84..251 100 -> Plus
2L 19038085..19038754 252..921 100 -> Plus
2L 19038816..19038978 922..1084 100 -> Plus
2L 19039041..19041121 1085..3165 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:46 Download gff for BS15476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19035799..19035865 17..83 100 -> Plus
arm_2L 19037804..19037971 84..251 100 -> Plus
arm_2L 19038085..19038754 252..921 100 -> Plus
arm_2L 19038816..19038978 922..1084 100 -> Plus
arm_2L 19039041..19041121 1085..3165 100   Plus

BS15476.3prime Sequence

839 bp (726 high quality bases) assembled on 2006-12-21

> BS15476.3prime
ATGGTCTAGAAAGCTTTCAGTACAGGTTGATCTTCTTGAGTATTGTCTTG
CGACACATGTGGCATGTGCGGAGCGTTTCGGCACAATGGGAGCACGCGCC
GTGCCCGCACAGGAAGGCCACATCCCTTTTTCGCTCCATGCAAATACCGC
AGAAGTGCGACTCCTCAAACTCCAGCACTTTGTTCTCCAGATAGCGAAGT
AGATCCCCGGACGGTAGGCGAGTGGGGTCACTAGGTGACGACGTGGACGT
GGGCAGGGCCACCACTCGGCCGCTGACCGTCAATCGCCGCTCGATCGCCA
CGGCACAGCGGAGACACTTTTTCATTCGGATGCCGCACTCCTCGCAGGCG
ATCTGATGCTGACACGGCTCAAAGCGCACCATCGGCAGGATCTCATTGCA
CACAATGCACTCATGGGGACCGGGGACGATCACCGGACTGGTACTGGGTC
CCGCCGCTCCGGCTTCCAACGCGGTACTGCTCGAGCTAGTGGTAACCGGA
GGCTTGGGCGCCTTCTTGCGCGGTGCCACCTGTGGAGAGACGTTTTGCGG
TGTTGCGTCGGAGTTCAGTTTCTTTACGCCCGGCGAGGCGGAGGGCGTGG
ATGGAGATGCTCCAACTCCAATGGCTGGGATATCGTTTGGCTTTGGCATT
AGTTCAAATGTCTGGCGCTGCGGTGGTGGGGGTGCTGCAACGCTTCCAGG
TCCGGCTCCATTGGATTCAGCTCCAGCAGACGCAGAGCTCTCCTCACCGT
CGGCTGATCCTGCGGACACTTCCAAAGCTTGAAGATTCCTAGGCAGCGAT
TCAGCTTCGCCCTGCTGCCCAAAAATCAGTTGCCTGATG

BS15476.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17492-PA 3150 mib2-RA 2328..3150 839..17 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-RC 3805 CG17492-RC 2564..3387 839..16 4120 100 Minus
mib2-RB 3899 CG17492-RB 2726..3549 839..16 4120 100 Minus
mib2-RA 4164 CG17492-RA 2923..3746 839..16 4120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19040300..19041123 839..16 4120 100 Minus
Blast to na_te.dros performed on 2015-01-30 04:34:14 has no hits.

BS15476.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:56 Download gff for BS15476.3prime
Subject Subject Range Query Range Percent Splice Strand
mib2-PA 2328..3150 17..839 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:12 Download gff for BS15476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17492-PA 2328..3150 17..839 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:32:15 Download gff for BS15476.3prime
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 2923..3746 16..839 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:47:10 Download gff for BS15476.3prime
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 2923..3746 16..839 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:47:10 Download gff for BS15476.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19040300..19041123 16..839 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:32:15 Download gff for BS15476.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19040300..19041123 16..839 100   Minus

BS15476.5prime Sequence

790 bp (777 high quality bases) assembled on 2006-12-21

> BS15476.5prime
GAAGTTATCACTCGACATGCGAGCCTCCATTCCGCCCGGCATTCGAGTGG
TGCGCGGACCCAACTGGATCTGGTCGAATCAAGACGACGGAGAAGGTCAC
GTTGGAACCGTTTGCGAAATCGGACGTTGCGGATCGACACATTCGCCAGA
AAACACTGTCGTGGTCAACTGGGATTCCGGACACCGGACCAACTACCGTG
TGGGCTACCAAAACCAGTACGACTTGATAATTGTAGATAATGCTCAAGTT
GGAGTTCGTCACTCAAATGTTGTCTGCGATGGCTGTTCCAAGGCGGGTAT
CGCTGGCATAGTATTCAAGTGCGCCCAGTGTCCCAACTATCACCTATGCG
CCTATTGCTACGCAGAGGATCTGCACGATATTGAGCACCCGTTTATCCGC
TACACGACTCCCAACTCGCTGGGCGTGAGATTGCCCATGAGAAAAGGTGC
CAAGCGCATCCAGCTGCGAGGCATCTTTGTGGGTTCCAAAGTAGTGCGCG
GTCCTGACTGGGAGTGGAACGAACAGGACGGCGGAGAAGGCAGGACGGGT
CGGGTAATGGAAATCCGAGGCTGGGACAACGAATCGTGTCGCAGCGTGGC
CAACGTAGCGTGGGTAACCGGATCGACGAACGTCTACCGTCTAGGTCACA
AGGGAAACGTTGACCTCAAGTACATTACTGCCACGTGCGGTGGTCACTAC
TATAAGGACCACATGCCTGTTCTAGGTCAGACAGAGGAGTTGCAGCCGGT
GGCGCCCATGGTGAAGCCAAGCTTTTCCGTGGGCGACCGC

BS15476.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17492-PA 3150 mib2-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-RC 3805 CG17492-RC 236..1010 16..790 3875 100 Plus
mib2-RB 3899 CG17492-RB 398..1172 16..790 3875 100 Plus
mib2-RA 4164 CG17492-RA 595..1369 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19038084..19038623 251..790 2700 100 Plus
2L 23513712 2L 19037802..19037972 82..252 855 100 Plus
2L 23513712 2L 19035798..19035865 16..83 340 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:38:37 has no hits.

BS15476.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:57 Download gff for BS15476.5prime
Subject Subject Range Query Range Percent Splice Strand
mib2-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:14 Download gff for BS15476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17492-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:31:50 Download gff for BS15476.5prime
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 588..1369 9..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:20 Download gff for BS15476.5prime
Subject Subject Range Query Range Percent Splice Strand
mib2-RA 588..1369 9..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:20 Download gff for BS15476.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19035791..19035865 9..83 96 -> Plus
2L 19037804..19037971 84..251 100 -> Plus
2L 19038085..19038623 252..790 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:31:50 Download gff for BS15476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19035791..19035865 9..83 96 -> Plus
arm_2L 19037804..19037971 84..251 100 -> Plus
arm_2L 19038085..19038623 252..790 100   Plus

BS15476.pep Sequence

Translation from 16 to 3165

> BS15476.pep
MRASIPPGIRVVRGPNWIWSNQDDGEGHVGTVCEIGRCGSTHSPENTVVV
NWDSGHRTNYRVGYQNQYDLIIVDNAQVGVRHSNVVCDGCSKAGIAGIVF
KCAQCPNYHLCAYCYAEDLHDIEHPFIRYTTPNSLGVRLPMRKGAKRIQL
RGIFVGSKVVRGPDWEWNEQDGGEGRTGRVMEIRGWDNESCRSVANVAWV
TGSTNVYRLGHKGNVDLKYITATCGGHYYKDHMPVLGQTEELQPVAPMVK
PSFSVGDRVKVCLEVDALMKLQQGHGGWNPRMVEHLSKLGTVHRITDKGD
IRVQYENCPNRWTFHPAALVKVVSFRVGDLVTIINDANKVQQLQKGHGEW
IEIMRHALGKICKVVKVYSDGDLRIQQLDDGFEWTLNPKCVKLERSPLAT
AAERSNSMMDLSHRRADHVMTPLSGLSGSSVADKLVREAAQGHLDFVRQY
LDVNPSQVDVMSGGKACIQVASHQGYVDLVSYLISKGANVNAVDKEGDSA
LHYAAFGNQPATMRVLLQHGAEVNFLNSSHCSALHICAHKKTPHCVRELL
QHNANVNIQDSYGDTALHDAIGKENTEVVELLCNAPNLDFTVKNNRGFNV
LHHAALKGNVVAARRILLLSRQLVNVRKDDGFAALHLAALNGHAQVVETL
VTEGQAELDIRNNRQQTPFLLAVSQGHAGVIERLVRLSCDVNAKDEDGDN
AMHLCVIKKSNLQSAAEPQPEEAPEIHKFYLSLVHSSIRPEDRLMYSILI
YLSRAGCRVELNNANASIFEWITDRHIRQLIFGQQGEAESLPRNLQALEV
SAGSADGEESSASAGAESNGAGPGSVAAPPPPQRQTFELMPKPNDIPAIG
VGASPSTPSASPGVKKLNSDATPQNVSPQVAPRKKAPKPPVTTSSSSTAL
EAGAAGPSTSPVIVPGPHECIVCNEILPMVRFEPCQHQIACEECGIRMKK
CLRCAVAIERRLTVSGRVVALPTSTSSPSDPTRLPSGDLLRYLENKVLEF
EESHFCGICMERKRDVAFLCGHGACSHCAETLRTCHMCRKTILKKINLY*

BS15476.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
mib2-PC 1049 CG17492-PC 1..1049 1..1049 5568 100 Plus
mib2-PB 1049 CG17492-PB 1..1049 1..1049 5568 100 Plus
mib2-PA 1049 CG17492-PA 1..1049 1..1049 5568 100 Plus
mib1-PA 1226 CG5841-PA 109..1055 8..1042 1448 35 Plus
mib1-PB 1115 CG5841-PB 13..944 23..1042 1387 34.7 Plus