Clone Sequence Records
BS15477.3prime Sequence
838 bp (800 high quality bases) assembled on 2006-12-21
> BS15477.3prime
TCCCTTAAGAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTACCCTTC
CTTGATCCCACTGTCATCGGGATCGACGATGTCCACCAGATTCTTCTCCA
GCTGCAGCATCATTCCACTATCGATGCCGCCCTCGAAACTGTCTTCCGAC
ATCAGTTGCGGTTTCCTGCCCCACATCGGCTGTTGCTGCTTATTGGCATT
GAAGCTATCGTTTCTGTCACTCTTGAAGCCGCCATATCCCAGATCAAAGT
TGTTCCAGTTGCCGGTCGTACTGCTCTTGGGGCAAATCGGGCCGTAGATA
CTCAGCATGGAGGAGCCAGTGGGCACATCGAATGTGGACGCATCGTCATC
CAATATGGAGTCTGATCGTACAAAGTTGGCTGAATCTTTACCCGTATTGT
TCCAGAACAGCAGTGATGAGCCATGATTGTTGTTGTTGTTATTGTGGGAG
TTACTATTGTTGTTATTGTGGTTATTGTTGGATCGCCGGAACAGAGGCAC
TGCATCCACATTGACCTCCGGGACCCTGTCCAGATCTATGCTAACACTAT
TCGGCGGTTTCTTTTCAAAAAATGAGGTATCAGCTGTTGCGGGTAAAATC
GACAACGGTCGGCTGGGATTCGGCTTGCTGGACGGTGGCTGCTGCTGTTG
GGGATGCTGTGGAGGATGTTGCTGCTGTGCCAGGTATGCTTGCTCCCACG
GATTGGCCAGATGGAAGACATCTCCACCGCTGGCGGGCAACATGTAGCCC
TTGTGCAGGTTACTGTTCACACTAAAATTCGGTGGGTTGGCATTGCGTTG
CGTTGGCGCTACCGGATTGGCTTGGTATTCTCTGGGCG
BS15477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16807-PA | 2460 | CG16807-RA | 1664..2452 | 838..50 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-RB | 3901 | CG16807-RB | 1800..2588 | 838..50 | 3945 | 100 | Minus |
| roq-RC | 6179 | CG16807-RC | 1800..2588 | 838..50 | 3945 | 100 | Minus |
| roq-RA | 4680 | CG16807-RA | 1800..2588 | 838..50 | 3945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16374860..16375509 | 189..838 | 3250 | 100 | Plus |
| 3L | 28110227 | 3L | 16374529..16374669 | 50..190 | 705 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 16:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6830 | 677..624 | 148 | 77.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2792..2845 | 678..626 | 141 | 75.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2374 | 707..626 | 137 | 66.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6820 | 678..625 | 128 | 72.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2366 | 677..625 | 125 | 73.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2421 | 677..635 | 125 | 76.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1148 | 677..635 | 125 | 76.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1538..1578 | 678..638 | 124 | 78 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6769 | 692..633 | 122 | 70 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6790 | 678..633 | 122 | 73.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1599 | 694..626 | 120 | 63.8 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3308 | 674..633 | 120 | 76.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6851 | 677..638 | 119 | 77.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2402 | 677..633 | 117 | 73.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6842 | 677..635 | 116 | 74.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1135 | 677..625 | 116 | 71.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6881 | 696..638 | 115 | 66.1 | Minus |
BS15477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:58 Download gff for
BS15477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16807-PA | 1664..2460 | 42..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:15 Download gff for
BS15477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16807-PA | 1664..2460 | 42..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:54:40 Download gff for
BS15477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 1884..2680 | 42..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:29 Download gff for
BS15477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 1800..2596 | 42..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:29 Download gff for
BS15477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16374521..16374667 | 42..188 | 97 | <- | Plus |
| 3L | 16374860..16375509 | 189..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:54:40 Download gff for
BS15477.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16367621..16367767 | 42..188 | 97 | <- | Plus |
| arm_3L | 16367960..16368609 | 189..838 | 100 | | Plus |
BS15477.5prime Sequence
772 bp (727 high quality bases) assembled on 2006-12-21
> BS15477.5prime
GAAGTTATCCGTCGACATGCCGATTCAGGCTCCCTCATGGACAGATTTTC
TGAACTGTCCCATCTGCTGCAATGAATTCGCGGCCAGCCAGCGATGTCCG
GTCAGTCTGGGCTGCGGGCACACCATCTGCAAGCTATGCCTGACGACCCT
CTACAACCGGCAGTGTCCCTTCGATCAGACCGTGATTGTCAGTGACATCG
ACAATTTGCCCATCAACCATGCCTTGCTCCAGTTGGTCAAGGACTCGGAG
CTCCTCGAGCTGGCACCACCACCGCCCAGTGTGCAGAAGCTGGAGCCGGA
GCACCTTAAGTGTTACCAACTGGGTCAGCGGTGCATCGAGGAGCTGGCTT
TGCACTTGAAGTCCTTCCTCAACCTGAACGGAAATGGCAATCTTCTAACT
CGACCCATGTTACGGAAACTGGTTACTCTGGTCAACTGCCAGCTGATGGA
GGAGGAGGGACGGGTGAGAGCGCTTCGAGCAGCCAGATCCCTAGGCGAAC
GCACAGTCACCGAGCTGATCCTGCAGCACCAAAATCCCCAGCAGTTGAGC
TCAAATCTGTGGGCTGCAGTGCGGACAAGAGGATGCCAGTTCCTTGGACC
CGCCATGCAGGAGGAGGTGCTCAAACTGGTGCTGCTGGCCTTGGAGGAGG
GATCAGCGCTTTCGCGCAAAGTGCTGGTCATGTTCGTCGTGCAGCGACTA
GAGCCGAAGTTTCCCCAGGCCTCCAAGACGAGTATCGGACATGTGGTACA
GCTGCTCTACCGCGCCAGCTGC
BS15477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16807-PA | 2460 | CG16807-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-RB | 3901 | CG16807-RB | 136..892 | 16..772 | 3785 | 100 | Plus |
| roq-RC | 6179 | CG16807-RC | 136..892 | 16..772 | 3785 | 100 | Plus |
| roq-RA | 4680 | CG16807-RA | 136..892 | 16..772 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16376417..16377014 | 772..175 | 2990 | 100 | Minus |
| 3L | 28110227 | 3L | 16377076..16377238 | 178..16 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 12:18:41 has no hits.
BS15477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:27:59 Download gff for
BS15477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16807-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:16 Download gff for
BS15477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16807-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:34:27 Download gff for
BS15477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 220..976 | 16..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 13:59:24 Download gff for
BS15477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 136..892 | 16..772 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 13:59:24 Download gff for
BS15477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16376417..16377010 | 179..772 | 100 | <- | Minus |
| 3L | 16377076..16377238 | 16..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:34:27 Download gff for
BS15477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16369517..16370110 | 179..772 | 100 | <- | Minus |
| arm_3L | 16370176..16370338 | 16..178 | 100 | | Minus |
BS15477.complete Sequence
2517 bp assembled on 2009-12-07
GenBank Submission: KX801215
> BS15477.complete
GAAGTTATCAGTCGACATGCCGATTCAGGCTCCCTCATGGACAGATTTTC
TGAACTGTCCCATCTGCTGCAATGAATTCGCGGCCAGCCAGCGATGTCCG
GTCAGTCTGGGCTGCGGGCACACCATCTGCAAGCTATGCCTGACGACCCT
CTACAACCGGCAGTGTCCCTTCGATCAGACCGTGATTGTCAGTGACATCG
ACAATTTGCCCATCAACCATGCCTTGCTCCAGTTGGTCAAGGACTCGGAG
CTCCTCGAGCTGGCACCACCACCGCCCAGTGTGCAGAAGCTGGAGCCGGA
GCACCTTAAGTGTTACCAACTGGGTCAGCGGTGCATCGAGGAGCTGGCTT
TGCACTTGAAGTCCTTCCTCAACCTGAACGGAAATGGCAATCTTCTAACT
CGACCCATGTTACGGAAACTGGTTACTCTGGTCAACTGCCAGCTGATGGA
GGAGGAGGGACGGGTGAGAGCGCTTCGAGCAGCCAGATCCCTAGGCGAAC
GCACAGTCACCGAGCTGATCCTGCAGCACCAAAATCCCCAGCAGTTGAGC
TCAAATCTGTGGGCTGCAGTGCGGACAAGAGGATGCCAGTTCCTTGGACC
CGCCATGCAGGAGGAGGTGCTCAAACTGGTGCTGCTGGCCTTGGAGGAGG
GATCAGCGCTTTCGCGCAAAGTGCTGGTCATGTTCGTCGTGCAGCGACTA
GAGCCGAAGTTTCCCCAGGCCTCCAAGACGAGTATCGGACATGTGGTACA
GCTGCTCTACCGCGCCAGCTGCTTCAAGGTGTCCAAGCGGGAGGCGGACT
CGTCGTTGATGCAGCTCAAAGAGGAATTCCGTACGTATGACGCCCTACGC
CGGGAGCACGATGCCCAAATCGTTCAGATAGCCACCGAGGCGGGTCTGCG
AATTGCACCGGAACAATGGTCTTCCCTATTGTATGGCGACGTGATGCATA
AAAGCCACATGCAGAGCATCATCGATAAGCTGCAGACGCCAAGCTCCTTT
GCGCAATCAGTCCAGGAATTGGTCATCGCCTTGCAGCGGACCAGCGATCC
TGCGAAGCTATCCAGTTTGCATCATCATCTGAAGTACCTGGCCAATATTG
ATCCCTGTGCGGAGGTTGCCCCGTGGTCGGTTTTGGCTGAGGCCTTGGAT
GCAGTGCGGCATTCGGTCGTTGGACTGGTGAACTTCCTTCAGCACCACGG
AGTGCGCAAGGCGCAGGACGGCATCAGTGGCGGTGGCAGTGGTGGGACGA
CCAATAGCAATCCGAAGTACAAGATCAGCTTATGCAGGGACTTGAATGTG
CGGCGGGTGTGTCCCCGAGGTTCTAGCTGTACCTTTGCCCATTCCCAGGA
GGAGGTAGAACGCTATCGTGCACGGAATCGAGGAAAACATATGAAGACAC
CGTTGGCGCTGCAGGGACCTCCAGCGGTAGGCGTAGGAGCCATAAAGAAA
CCACTAGGCGAGCAGGAGGGACCGCCTCTAGGTAACATGCCACCCATGTT
ACCTATGTCGCCTATGCATTATATGGGCTCTCCTAGGGGATATCTGGATC
CCAGCTTGGGACTTTCGCCAGGTGGTGGTCTCCCGCCGTCGCATCACAGT
CCCATTACCAGGCTCATAGTGCCGAGCCGCTACGATTCGCGCTTTAGCGG
GTTTGGCGGTGGCACGCCCAGGATTCCTTCGCCCAGAGAATACCAAGCCA
ATCCGGTAGCGCCAACGCAACGCAATGCCAACCCACCGAATTTTAGTGTG
AACAGTAACCTGCACAAGGGCTACATGTTGCCCGCCAGCGGTGGAGATGT
CTTCCATCTGGCCAATCCGTGGGAGCAAGCATACCTGGCACAGCAGCAAC
ATCCTCCACAGCATCCCCAACAGCAGCAGCCACCGTCCAGCAAGCCGAAT
CCCAGCCGACCGTTGTCGATTTTACCCGCAACAGCTGATACCTCATTTTT
TGAAAAGAAACCGCCGAATAGTGTTAGCATAGATCTGGACAGGGTCCCGG
AGGTCAATGTGGATGCAGTGCCTCTGTTCCGGCGATCCAACAATAACCAC
AATAACAACAATAGTAACTCCCACAATAACAACAACAACAATCATGGCTC
ATCACTGCTGTTCTGGAACAATACGGGTAAAGATTCAGCCAACTTTGTAC
GATCAGACTCCATATTGGATGACGATGCGTCCACATTCGATGTGCCCACT
GGCTCCTCCATGCTGAGTATCTACGGCCCGATTTGCCCCAAGAGCAGTAC
GACCGGCAACTGGAACAACTTTGATCTGGGATATGGCGGCTTCAAGAGTG
ACAGAAACGATAGCTTCAATGCCAATAAGCAGCAACAGCCGATGTGGGGC
AGGAAACCGCAACTGATGTCGGAAGACAGTTTCGAGGGCGGCATCGATAG
TGGAATGATGCTGCAGCTGGAGAAGAATCTGGTGGACATCGTCGATCCCG
ATGACAGTGGGATCAAGGTGGACTAGAAGCTTTCTAGACCATTCGTTTGG
CGCGCCCTCTTAAGGGA
BS15477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-RB | 2460 | CG16807-PB | 1..2460 | 17..2476 | 12300 | 100 | Plus |
| roq-RC | 2460 | CG16807-PC | 1..2460 | 17..2476 | 12300 | 100 | Plus |
| roq-RA | 2460 | CG16807-PA | 1..2460 | 17..2476 | 12300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-RB | 3901 | CG16807-RB | 136..2601 | 16..2481 | 12315 | 100 | Plus |
| roq-RC | 6179 | CG16807-RC | 136..2601 | 16..2481 | 12315 | 100 | Plus |
| roq-RA | 4680 | CG16807-RA | 136..2601 | 16..2481 | 12315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16374860..16377014 | 2329..175 | 10775 | 100 | Minus |
| 3L | 28110227 | 3L | 16377076..16377238 | 178..16 | 815 | 100 | Minus |
| 3L | 28110227 | 3L | 16374516..16374669 | 2481..2328 | 755 | 99.4 | Minus |
Blast to na_te.dros performed 2014-11-28 01:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6830 | 1841..1894 | 148 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2792..2845 | 1840..1892 | 141 | 75.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2374 | 1811..1892 | 137 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6820 | 1840..1893 | 128 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2366 | 1841..1893 | 125 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2421 | 1841..1883 | 125 | 76.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1148 | 1841..1883 | 125 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1538..1578 | 1840..1880 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6769 | 1826..1885 | 122 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6790 | 1840..1885 | 122 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1599 | 1824..1892 | 120 | 63.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3308 | 1844..1885 | 120 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6851 | 1841..1880 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2402 | 1841..1885 | 117 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6842 | 1841..1883 | 116 | 74.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1135 | 1841..1893 | 116 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6881 | 1822..1880 | 115 | 66.1 | Plus |
BS15477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:10 Download gff for
BS15477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 1..2460 | 17..2476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:08 Download gff for
BS15477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 221..2691 | 17..2489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:15 Download gff for
BS15477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 221..2691 | 17..2489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:18 Download gff for
BS15477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 221..2691 | 17..2489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:25 Download gff for
BS15477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 137..2607 | 17..2489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:25 Download gff for
BS15477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16374510..16374667 | 2330..2489 | 97 | <- | Minus |
| 3L | 16374860..16377010 | 179..2329 | 100 | <- | Minus |
| 3L | 16377076..16377237 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:15 Download gff for
BS15477.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16367610..16367767 | 2330..2489 | 97 | <- | Minus |
| arm_3L | 16367960..16370110 | 179..2329 | 100 | <- | Minus |
| arm_3L | 16370176..16370337 | 17..178 | 100 | | Minus |
BS15477.pep Sequence
Translation from 16 to 2475
> BS15477.pep
MPIQAPSWTDFLNCPICCNEFAASQRCPVSLGCGHTICKLCLTTLYNRQC
PFDQTVIVSDIDNLPINHALLQLVKDSELLELAPPPPSVQKLEPEHLKCY
QLGQRCIEELALHLKSFLNLNGNGNLLTRPMLRKLVTLVNCQLMEEEGRV
RALRAARSLGERTVTELILQHQNPQQLSSNLWAAVRTRGCQFLGPAMQEE
VLKLVLLALEEGSALSRKVLVMFVVQRLEPKFPQASKTSIGHVVQLLYRA
SCFKVSKREADSSLMQLKEEFRTYDALRREHDAQIVQIATEAGLRIAPEQ
WSSLLYGDVMHKSHMQSIIDKLQTPSSFAQSVQELVIALQRTSDPAKLSS
LHHHLKYLANIDPCAEVAPWSVLAEALDAVRHSVVGLVNFLQHHGVRKAQ
DGISGGGSGGTTNSNPKYKISLCRDLNVRRVCPRGSSCTFAHSQEEVERY
RARNRGKHMKTPLALQGPPAVGVGAIKKPLGEQEGPPLGNMPPMLPMSPM
HYMGSPRGYLDPSLGLSPGGGLPPSHHSPITRLIVPSRYDSRFSGFGGGT
PRIPSPREYQANPVAPTQRNANPPNFSVNSNLHKGYMLPASGGDVFHLAN
PWEQAYLAQQQHPPQHPQQQQPPSSKPNPSRPLSILPATADTSFFEKKPP
NSVSIDLDRVPEVNVDAVPLFRRSNNNHNNNNSNSHNNNNNNHGSSLLFW
NNTGKDSANFVRSDSILDDDASTFDVPTGSSMLSIYGPICPKSSTTGNWN
NFDLGYGGFKSDRNDSFNANKQQQPMWGRKPQLMSEDSFEGGIDSGMMLQ
LEKNLVDIVDPDDSGIKVD*
BS15477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-PB | 819 | CG16807-PB | 1..819 | 1..819 | 4341 | 100 | Plus |
| roq-PC | 819 | CG16807-PC | 1..819 | 1..819 | 4341 | 100 | Plus |
| roq-PA | 819 | CG16807-PA | 1..819 | 1..819 | 4341 | 100 | Plus |
