Clone BS15479 Report

Search the DGRC for BS15479

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:154
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG31156-RA
Protein status:BS15479.pep: full length peptide match
Sequenced Size:2879

Clone Sequence Records

BS15479.3prime Sequence

865 bp (831 high quality bases) assembled on 2006-12-21

> BS15479.3prime
ATGGTCTAGAAAGCTTCTAATCCTCCGCCTTGAACTTAAACGAGGTATCC
GTCTCCATCAGCATATTTTCCAAACGTAATTCCAACTGGCGTCGCTTCAG
ATCCACCTTTACCACCGATGCCACAATGCGATCGCCAACGCTCAGCTGCG
AATTATTCATGTTACTGTTGTGTATGAGGCCATTGCGCTCCACTCCAACG
TCCACGAAGGCGCCAAACTGGGGTTACGTTGGTCACGGCACCAGTGACCA
CCTCGCCCATGCTAAGATCATCCAGCCTAGTTAGACCTTGTTTGAACAGT
GGCCTCTTGTCCAGATCTGCTCGATAATCCTGAAGTAATTCGCGCTGCAG
GGCAACCAACAGGAACTCCAATCGCTCCATGGGCAGCTTGTGCTGCTTGG
CAATGCGATCGAGATTAGGCTGGGATGAGGCAAACTGCTTGATGCTAGCT
ATAAAGGCAGCCTTGCCCACATCCGACAGCTTTAAGTCACATTCTCCGAC
AATACTTTCCACAACGTTGTAGCTCTCAGGATGCACCCAAGTGCAATCTA
ATGGATTCTGTAGTTGTCCTCCAACGCTTCGGGGTTCGATGCGCACAAAA
CCGGCGCACTGGACAAACGATTTCTCACCTATGCTTCGCACGGAGAGCAG
ATCCTTCCGTGTCTTGAATGGTCCTTTCTGCGTACGATGCTCAATGATCT
TTTCCGCTTTCTTTTCCGACAGACCAGCAATGTGCTTGAGTACACTCAGA
CTGGCTGTGTTGAGATCAACGCCAACATAACTGACACACTCGGACACAAC
GTCATTCAGCGATGCCGTCAAAATCTTCTCGGGAACATCGTGCTGGTACA
TACCAACCCCCAGGT

BS15479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-PA 2847 CG31156-RA 2000..2644 865..221 3225 100 Minus
CG31156-PB 2982 CG31156-RB 2000..2360 865..505 1805 100 Minus
CG31156-PB 2982 CG31156-RB 2496..2779 504..221 1420 100 Minus
CG31156-PA 2847 CG31156-RA 2642..2847 222..17 1030 100 Minus
CG31156-PB 2982 CG31156-RB 2777..2982 222..17 1030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-RA 3193 CG31156-RA 2156..3004 865..16 4225 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22610722..22610952 505..735 1155 100 Plus
3R 32079331 3R 22608859..22609088 16..246 1090 99.1 Plus
3R 32079331 3R 22609349..22609483 372..506 675 100 Plus
3R 32079331 3R 22609145..22609275 241..371 655 100 Plus
3R 32079331 3R 22611009..22611139 735..865 655 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:28:33 has no hits.

BS15479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:02 Download gff for BS15479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-PA 2000..2847 17..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:20 Download gff for BS15479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-PA 2000..2847 17..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:33:22 Download gff for BS15479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 2156..3004 16..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:10 Download gff for BS15479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 2156..3004 16..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:10 Download gff for BS15479.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22611010..22611139 736..865 100   Plus
3R 22608859..22609083 16..241 99 <- Plus
3R 22609146..22609275 242..371 100 <- Plus
3R 22609349..22609481 372..504 100 <- Plus
3R 22610722..22610952 505..735 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:33:22 Download gff for BS15479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18434581..18434805 16..241 99 <- Plus
arm_3R 18434868..18434997 242..371 100 <- Plus
arm_3R 18435071..18435203 372..504 100 <- Plus
arm_3R 18436444..18436674 505..735 100 <- Plus
arm_3R 18436732..18436861 736..865 100   Plus

BS15479.5prime Sequence

810 bp (751 high quality bases) assembled on 2006-12-21

> BS15479.5prime
GAAGTTATCAGTCGACATGTCGAAACGACCTCGACGCGCGGCATCCACAA
AAAAGATAGTAATTGAAATCTCCGACTCAGATGAGGAAGTGAATCTTACG
GCAGACGACGATTACAGGCCGGAAGAAACCAAGAGTCGCATAATAGATCG
CGCTGCAGATGCGCAGACCGTCGTGACCAAACGCCAGCGGTTCCCAACAT
CCAAAAAAACAGCTGCTGAGGGACCAGCTCCCAAGAAAAAGCGGGGCGAC
AAAGAAAAGGCGGACGAGAATGCTTGTCCCAATGAGAACAATCCGGAATC
GGTAGTCCAGGACACACCTTCAACTTCAAACCAACGGAATGGAGCCGTAG
GCACTGAACACAATTCCGAAGCTCCGGCTCCTAAGAGAAAACGCGCCAGA
AAGGATAAGGAGGACTTGAAAACGGCAGCCAATGAGACTAATCCTGAGAA
GGGGGACGTTGTGCCCTCAACAGCAGTGACACAACCAAACGATATCGTAG
CCAGCTCCTCACACAACAAGTCTTCCACTGGACGCAGTTCCTTCTGGGAG
CGACGAAAGGTGTGGAACATCGACGAGCTCCTGGCCGAAACGGAGAGCAT
ACAACCGCAGGCAGCTCGAAATATTGTAAAGCTCTTCGAGGATGAAAATA
CCATACCTTTTATTTGCAGGTACCGTCGAGATCTGGTGGATCACATCGCT
CCAGATCGCCTTAGAGATATTCGGAACACGTACACAGAGATCGTCGATCT
GCGGAANAGAGCTGAGAATATTATTGGTAAATTGCAGCGTGAAAACATCA
TGACTCCGGA

BS15479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-PA 2847 CG31156-RA 1..794 17..810 3951 99.8 Plus
CG31156-PB 2982 CG31156-RB 1..794 17..810 3951 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-RA 3193 CG31156-RA 155..950 15..810 3969 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22612786..22613284 673..175 2495 100 Minus
3R 32079331 3R 22613342..22613502 175..15 805 100 Minus
3R 32079331 3R 22612584..22612727 810..667 709 99.3 Minus
Blast to na_te.dros performed on 2015-01-30 16:38:05 has no hits.

BS15479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:04 Download gff for BS15479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-PA 1..793 17..809 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:21 Download gff for BS15479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-PB 1..793 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:51:39 Download gff for BS15479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 149..949 7..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:08:51 Download gff for BS15479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 149..949 7..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:08:51 Download gff for BS15479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22612585..22612724 670..809 99 <- Minus
3R 22612790..22613284 175..669 100 <- Minus
3R 22613343..22613508 7..174 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:51:39 Download gff for BS15479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18438307..18438446 670..809 99 <- Minus
arm_3R 18438512..18439006 175..669 100 <- Minus
arm_3R 18439065..18439230 7..174 97   Minus

BS15479.complete Sequence

2879 bp assembled on 2009-08-24

GenBank Submission: KX802440

> BS15479.complete
GAAGTTATCAGTCGACATGTCGAAACGACCTCGACGCGCGGCATCCACAA
AAAAGATAGTAATTGAAATCTCCGACTCAGATGAGGAAGTGAATCTTACG
GCAGACGACGATTACAGGCCGGAAGAAACCAAGAGTCGCATAATAGATCG
CGCTGCAGATGCGCAGACCGTCGTGACCAAACGCCAGCGGTTCCCAACAT
CCAAAAAAACAGCTGCTGAGGGACCAGCTCCCAAGAAAAAGCGGGGCGAC
AAAGAAAAGGCGGACGAGAATGCTTGTCCCAATGAGAACAATCCGGAATC
GGTAGTCCAGGACACACCTTCAACTTCAAACCAACGGAATGGAGCCGTAG
GCACTGAACACAATTCCGAAGCTCCGGCTCCTAAGAGAAAACGCGCCAGA
AAGGATAAGGAGGACTTGAAAACGGCAGCCAATGAGACTAATCCTGAGAA
GGGGGACGTTGTGCCCTCAACAGCAGTGACACAACCAAACGATATCGTAG
CCAGCTCCTCACACAACAAGTCTTCCACTGGACGCAGTTCCTTCTGGGAG
CGACGAAAGGTGTGGAACATCGACGAGCTCCTGGCCGAAACGGAGAGCAT
ACAACCGCAGGCAGCTCGAAATATTGTAAAGCTCTTCGAGGATGAAAATA
CCATACCTTTTATTTGCAGGTACCGTCGAGATCTGGTGGATCACATCGCT
CCAGATCGCCTTAGAGATATTCGGAACACGTACACAGAGATCGTCGATCT
GCGGAAAAGAGCTGAGAATATTATTGGTAAATTGCAGCGTGAAAACATCA
TGACTCCGGAAATAAGAGAGGAGCTAATGTGCGCCAAGTCCAACGAAGAA
CTGGAGTTCCTTTATGCCCCCTATAAGCCGGCCAGTAAGGGCACTTTGGC
GGAACGCGCCAAAGCTTTGGGCTTGCAGGTGTACGCCGATTGTTTACTGT
ACGGCTCAGCACCTAAGGTCAACCTTTCTGAAATTGTGGACCGCCGAAAT
GAGGCTTTAGCTACGGAGGCACTTGTGATGTCTGGAATCTGCCAAATTAT
TATTCACAACATCAGCAAAAACACAAATGTTTTGGAGGAAATACGCAGAT
TGCAAAACGTGCACCGGGTATTCCTCAAGTGCAGCAAGACCAAGGAGGCG
AAATCGTCTAAATCTAGTTCTTCTAGTAAAGCAAGCTCCAGTAAAGGATC
CAACCAAAATGCAGATAAGAAATTGGATAGCTCAAAGTTTGAGAATTATT
TCAACTTCCAGGGTGATGTTAAAACTATAAAACCTTATCAAATGTTAGCC
ATCAATCGTGGGGAGAAGCACAAATGGCTTTCTGTCAAGATAGAAACGAA
CGATTACCTTAAAAGAGATCTGATGCGCTATATAACCGATCAGTACATGA
ACCAAGGCTTGCAATATCCATTAAGAAGGGAGGTGTTCACAAAATCCTTA
GAGGAGTGCTACGCGAAGAAGTTGCAGCCCTTGATGTGCAGGCAGATTCG
AGCGGCTTTAAAAGAAAAAGGCACAAAGGCAGCCATCGATGTGTTTGCCA
AGAACCTGAAGCAACTACTGTTGATATCCCCCTTGAAAGGCGAACGCATT
TTGGGCATAGATCCGGGTTTTATAAATGGATGCAAGCTGGCACTTATATC
CGAGACTGCTGATGTGCTGTACACTGGTGTTATTTACCCTCATGGTGCCA
TGTCAAACAAGCGGGCTGCCGAACAGAAATTGGTTCAGCTTCTTTCAGAT
CATAACTGTAAAATTATTGGCCTGGGCAATGGTACTGCCTGTCGCGAAAC
TGAGCACTGGCTAACTGGTATGTTTCATGCCGGCGTTCTGGACAGCAGGA
TCATTCGCTACAGCATCGTTAACGAGAATGGAGCATCTATTTACTCCTGC
AGCAATGTGGCCGCCAAGGAGTTTCCCAAAATGGATACAAACGAAAGGAG
CGCAGTGTCCATAGCGCGTCGTTTGAATGATCCATTGAGTGAATATGTTA
AAATAGAGCCCCGTCACCTGGGGGTTGGTATGTACCAGCACGATGTTCCC
GAGAAGATTTTGACGGCATCGCTGAATGACGTTGTGTCCGAGTGTGTCAG
TTATGTTGGCGTTGATCTCAACACAGCCAGTCTGAGTGTACTCAAGCACA
TTGCTGGTCTGTCGGAAAAGAAAGCGGAAAAGATCATTGAGCATCGTACG
CAGAAAGGACCATTCAAGACACGGAAGGATCTGCTCTCCGTGCGAAGCAT
AGGTGAGAAATCGTTTGTCCAGTGCGCCGGTTTTGTGCGCATCGAACCCC
GAAGCGTTGGAGGACAACTACAGAATCCATTAGATTGCACTTGGGTGCAT
CCTGAGAGCTACAACGTTGTGGAAAGTATTGTCGGAGAATGTGACTTAAA
GCTGTCGGATGTGGGCAAGGCTGCCTTTATAGCTAGCATCAAGCAGTTTG
CCTCATCCCAGCCTAATCTCGATCGCATTGCCAAGCAGCACAAGCTGCCC
ATGGAGCGATTGGAGTTCCTGTTGGTTGCCCTGCAGCGCGAATTACTTCA
GGATTATCGAGCAGATCTGGACAAGAGGCCACTGTTCAAACAAGGTCTAA
CTAGGCTGGATGATCTTAGCATGGGCGAGGTGGTCACTGGTGCCGTGACC
AACGTAACCCAGTTTGGCGCCTTCGTGGACGTTGGAGTGGAGCGCAATGG
CCTCATACACAACAGTAACATGAATAATTCGCAGCTGAGCGTTGGCGATC
GCATTGTGGCATCGGTGGTAAAGGTGGATCTGAAGCGACGCCAGTTGGAA
TTACGTTTGGAAAATATGCTGATGGAGACGGATACCTCGTTTAAGTTCAA
GGCGGAGGATTAGAAGCTTTCTAGACCAT

BS15479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-RA 2847 CG31156-PA 1..2847 17..2863 14235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-RA 3193 CG31156-RA 155..3004 15..2864 14250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22612786..22613284 673..175 2495 100 Minus
3R 32079331 3R 22612292..22612727 1102..667 2180 100 Minus
3R 32079331 3R 22611863..22612233 1472..1102 1855 100 Minus
3R 32079331 3R 22611521..22611803 1755..1473 1415 100 Minus
3R 32079331 3R 22610722..22610952 2376..2146 1155 100 Minus
3R 32079331 3R 22608859..22609088 2864..2635 1135 99.6 Minus
3R 32079331 3R 22611252..22611451 1955..1756 1000 100 Minus
3R 32079331 3R 22611009..22611201 2146..1954 965 100 Minus
3R 32079331 3R 22613342..22613502 175..15 805 100 Minus
3R 32079331 3R 22609349..22609483 2509..2375 675 100 Minus
3R 32079331 3R 22609145..22609275 2640..2510 655 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:36:11 has no hits.

BS15479.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:38 Download gff for BS15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 128..2974 17..2863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:25 Download gff for BS15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 157..3003 17..2863 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:28 Download gff for BS15479.complete
Subject Subject Range Query Range Percent Splice Strand
CG31156-RA 157..3003 17..2863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:28 Download gff for BS15479.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22611521..22611803 1473..1755 100 <- Minus
3R 22611010..22611199 1956..2145 100 <- Minus
3R 22611252..22611451 1756..1955 100 <- Minus
3R 22608860..22609083 2640..2863 100 <- Minus
3R 22609146..22609275 2510..2639 100 <- Minus
3R 22609349..22609481 2377..2509 100 <- Minus
3R 22610722..22610952 2146..2376 100 <- Minus
3R 22611863..22612233 1102..1472 100 <- Minus
3R 22612293..22612724 670..1101 100 <- Minus
3R 22612790..22613284 175..669 100 <- Minus
3R 22613343..22613500 17..174 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:25 Download gff for BS15479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18436444..18436674 2146..2376 100 <- Minus
arm_3R 18434582..18434805 2640..2863 100 <- Minus
arm_3R 18434868..18434997 2510..2639 100 <- Minus
arm_3R 18435071..18435203 2377..2509 100 <- Minus
arm_3R 18436732..18436921 1956..2145 100 <- Minus
arm_3R 18436974..18437173 1756..1955 100 <- Minus
arm_3R 18437243..18437525 1473..1755 100 <- Minus
arm_3R 18437585..18437955 1102..1472 100 <- Minus
arm_3R 18438015..18438446 670..1101 100 <- Minus
arm_3R 18438512..18439006 175..669 100 <- Minus
arm_3R 18439065..18439222 17..174 100   Minus

BS15479.pep Sequence

Translation from 16 to 2862

> BS15479.pep
MSKRPRRAASTKKIVIEISDSDEEVNLTADDDYRPEETKSRIIDRAADAQ
TVVTKRQRFPTSKKTAAEGPAPKKKRGDKEKADENACPNENNPESVVQDT
PSTSNQRNGAVGTEHNSEAPAPKRKRARKDKEDLKTAANETNPEKGDVVP
STAVTQPNDIVASSSHNKSSTGRSSFWERRKVWNIDELLAETESIQPQAA
RNIVKLFEDENTIPFICRYRRDLVDHIAPDRLRDIRNTYTEIVDLRKRAE
NIIGKLQRENIMTPEIREELMCAKSNEELEFLYAPYKPASKGTLAERAKA
LGLQVYADCLLYGSAPKVNLSEIVDRRNEALATEALVMSGICQIIIHNIS
KNTNVLEEIRRLQNVHRVFLKCSKTKEAKSSKSSSSSKASSSKGSNQNAD
KKLDSSKFENYFNFQGDVKTIKPYQMLAINRGEKHKWLSVKIETNDYLKR
DLMRYITDQYMNQGLQYPLRREVFTKSLEECYAKKLQPLMCRQIRAALKE
KGTKAAIDVFAKNLKQLLLISPLKGERILGIDPGFINGCKLALISETADV
LYTGVIYPHGAMSNKRAAEQKLVQLLSDHNCKIIGLGNGTACRETEHWLT
GMFHAGVLDSRIIRYSIVNENGASIYSCSNVAAKEFPKMDTNERSAVSIA
RRLNDPLSEYVKIEPRHLGVGMYQHDVPEKILTASLNDVVSECVSYVGVD
LNTASLSVLKHIAGLSEKKAEKIIEHRTQKGPFKTRKDLLSVRSIGEKSF
VQCAGFVRIEPRSVGGQLQNPLDCTWVHPESYNVVESIVGECDLKLSDVG
KAAFIASIKQFASSQPNLDRIAKQHKLPMERLEFLLVALQRELLQDYRAD
LDKRPLFKQGLTRLDDLSMGEVVTGAVTNVTQFGAFVDVGVERNGLIHNS
NMNNSQLSVGDRIVASVVKVDLKRRQLELRLENMLMETDTSFKFKAED*

BS15479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31156-PA 948 CG31156-PA 1..948 1..948 4831 100 Plus