Clone Sequence Records
BS15482.3prime Sequence
803 bp (767 high quality bases) assembled on 2006-12-21
> BS15482.3prime
ATGGTCTAGAAAGCTTTTACCTTGATAAACTTTGTTTCCTTATTAAAACT
AGATGCGACGGTAGCTTGATTTCTAGAGCCCACCTTGTAAAAATTACGCA
CTCTTTGGGTTTTGCTAACTGGCGTTTCAGTACTACTTTTTTTTATATTT
AACTTGTTGGGCTTCCGTGGAATTACGTTTTGACGAAGTTTAGCTGGAAA
CAAATGATGACTAACTTCAAAGTCTTTTGTATTAAATACTTCACAGTCTA
CTTGGATCATTTTCATTTTACCGTTAATTCCCGGATTTTCTAAGGGAAGT
ACCAACGACAATTTTGGGCGATAACTACTGTTGTAACTTAATGCTGGAAG
TAGTGCATGATCCATATTAAATGAAAATACGTAAAAAGTATCATCCCTTC
TCTCAATTTTACTAATTACATTTATTTGTTCGCGCATATTTTCAAAAGAT
TTCGTATTGTTTAGTTTTTGCTGTTTTTCTGGCAAAACAGATGTGTAATC
ATTTAAATCAATAAACATTTTTCGCTTTTCGTGTTTGATGTGTATGTCAC
GTTTTTCCTCAAAATAATTATTAAAAAATTCAAAACCATTTGAATCCTCT
TTTTCCTTTGAAAAATTAGACACGTTTAAAGTGCCGCTAATCCATTTATG
CAAATTTTGAGCGAGCATAAAGTATTTTGATTGATTGGAAGAACCATTAT
GGGACCTGCACCTGTTTATACAGTTTCGTGTACTTAAATATGTTAAGGGT
GGAGGTTCATTATATGAGTAAGTATGAGATACATTTTTGGTAATGTTTTC
AAA
BS15482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3136-PC | 2226 | CG3136-RC | 1441..2222 | 803..22 | 3910 | 100 | Minus |
| CG3136-PA | 2220 | CG3136-RA | 1435..2216 | 803..22 | 3910 | 100 | Minus |
| CG3136-PB | 2220 | CG3136-RB | 1435..2216 | 803..22 | 3910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 3959 | CG3136-RB | 2448..3229 | 803..22 | 3910 | 100 | Minus |
| Atf6-RA | 3076 | CG3136-RA | 1565..2346 | 803..22 | 3910 | 100 | Minus |
| Atf6-RC | 2488 | CG3136-RC | 1539..2320 | 803..22 | 3910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5153245..5154026 | 803..22 | 3910 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 18:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 493..567 | 456..530 | 140 | 68.4 | Plus |
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 7310..7384 | 456..530 | 140 | 68.4 | Plus |
BS15482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:07 Download gff for
BS15482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1438..2220 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:25 Download gff for
BS15482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PB | 1438..2220 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:04:08 Download gff for
BS15482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 1542..2324 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:16 Download gff for
BS15482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 1542..2324 | 17..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:16 Download gff for
BS15482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5153248..5154030 | 17..800 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:04:08 Download gff for
BS15482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1040753..1041535 | 17..800 | 99 | | Minus |
BS15482.5prime Sequence
798 bp (775 high quality bases) assembled on 2006-12-21
> BS15482.5prime
GAAGTTATCCTTCGACATGGACATCAATGAATATAATTTATACAACGATT
TATCGCTGTTGGGAGAAGTGACTGAAAATAACTACGACAATAATATTGTA
CACGACATTCTGAACTCATCAGCATTCTACAATGATACATCGTTAGATCT
AAGTGAATTAATACCTGATCTTCAAAAAGAAGCCTTTGGATTGCATTTCT
CGTCAAACCCAATAACTTCAGAATTTAGCTTGAGTTCCCCGATTTCTGGT
TTGAAACAAATTCCTTCAGCGTGTTCTGGTGAATTTAAAAGAAATGTAAA
TGACAATAATTTTCAATTGGATCTTACCAACAGTAGAAATGATTTACCTG
AGCCTAATTCGTCTCCCACAAGAAGCTTAAATCGTTCAAATGTAAATGGA
TGTTCTAACGAAGAGGCGGTCTATCCACTCTTAGTCGATTCAGATAAGTT
TGATCCATTTTTTGAACCTGCTAAAGTTCGGAGCCCCAACAAAGAATTCA
ACAGCACGATTTCTAATCTATCAGATATAAAAAACGAACTTCCGGAAACT
TCCCAAGACTTGGGTTTTAATTCATATAACACTTCAAGGAATAATTCAAC
TTTAACCAAAAGCTGGCCAATAAATACTGAGCTGAATCTAGATAATCAAG
TTCCAAAAACAGTTTTACCTTTGTCAAGGACAATTTATTTACCTTCACAT
GATTACAAAGGGCTTTTGCCAACAGTGAAATGTAACGGTGATAGAACCTT
AAAGAAAAATGTTAATGTCAGGTCTAAGATTTCTAATATCGTTATTAA
BS15482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3136-PC | 2226 | CG3136-RC | 1..782 | 17..798 | 3910 | 100 | Plus |
| CG3136-PA | 2220 | CG3136-RA | 23..776 | 45..798 | 3770 | 100 | Plus |
| CG3136-PB | 2220 | CG3136-RB | 23..776 | 45..798 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RC | 2488 | CG3136-RC | 99..880 | 17..798 | 3910 | 100 | Plus |
| Atf6-RB | 3959 | CG3136-RB | 1036..1789 | 45..798 | 3770 | 100 | Plus |
| Atf6-RA | 3076 | CG3136-RA | 153..906 | 45..798 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5148201..5148954 | 45..798 | 3770 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 12:18:01 has no hits.
BS15482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:08 Download gff for
BS15482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PC | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:27 Download gff for
BS15482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3136-PC | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:34:14 Download gff for
BS15482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 93..880 | 11..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 13:59:15 Download gff for
BS15482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 93..880 | 11..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 13:59:15 Download gff for
BS15482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5144825..5144858 | 11..44 | 91 | -> | Plus |
| 2R | 5148201..5148954 | 45..798 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:34:14 Download gff for
BS15482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1032330..1032363 | 11..44 | 91 | -> | Plus |
| arm_2R | 1035706..1036459 | 45..798 | 100 | | Plus |
BS15482.complete Sequence
2258 bp assembled on 2008-08-14
GenBank Submission: KX802135
> BS15482.complete
GAAGTTATCAGTCGACATGGACATCAATGAATATAATTTATACAACGATT
TATCGCTGTTGGGAGAAGTGACTGAAAATAACTACGACAATAATATTGTA
CACGACATTCTGAACTCATCAGCATTCTACAATGATACATCGTTAGATCT
AAGTGAATTAATACCTGATCTTCAAAAAGAAGCCTTTGGATTGCATTTCT
CGTCAAACCCAATAACTTCAGAATTTAGCTTGAGTTCCCCGATTTCTGGT
TTGAAACAAATTCCTTCAGCGTGTTCTGGTGAATTTAAAAGAAATGTAAA
TGACAATAATTTTCAATTGGATCTTACCAACAGTAGAAATGATTTACCTG
AGCCTAATTCGTCTCCCACAAGAAGCTTAAATCGTTCAAATGTAAATGGA
TGTTCTAACGAAGAGGCGGTCTATCCACTCTTAGTCGATTCAGATAAGTT
TGATCCATTTTTTGAACCTGCTAAAGTTCGGAGCCCCAACAAAGAATTCA
ACAGCACGATTTCTAATCTATCAGATATAAAAAACGAACTTCCGGAAACT
TCCCAAGACTTGGGTTTTAATTCATATAACACTTCAAGGAATAATTCAAC
TTTAACCAAAAGCTGGCCAATAAATACTGAGCTGAATCTAGATAATCAAG
TTCCAAAAACAGTTTTACCTTTGTCAAGGACAATTTATTTACCTTCACAT
GATTACAAAGGGCTTTTGCCAACAGTGAAATGTAACGGTGATAGAACCTT
AAAGAAAAATGTTAATGTCAGGTCTAAGATTTCTAATATCGTTATTAAGA
AAAAAAATGCAACTTTTATACAATCATTGAAAGAAAGCACTCCATCACAT
ACAATGGATGATAAGATCTACAAAAAATATCAACGTATGATTAAGAACCG
AGAGTCTGCTTCCTTATCACGCAAAAAAAGAAAGGAGTATGTTGTTTCAT
TAGAGACTCGAATAAATAAACTTGAAAAAGAATGCGATTCCCTAAAAGCT
GAAAATATAACATTACGGGATCAGATATTTCTGCTTGCCACCTCTTGTCA
GCGTGAATCTGGAAATGCAAATGGTCTTTTACATAACTATTCAGGATCTG
AACGAAGCGAAAATAAAAACGGAAGATTTACATCAAAGGCAAAGCATTGC
AATAAAAATAATACCACAGCAACCATTAAAAAAAATGTAGCTATATTATT
TGCTATGGCTTTTGTGGTATCTCTAAACGCTGGAAATTTTCAAAAGTATC
TCAACATACCAAATAACTTGGAAGGTAAAAGTGAGATTGAGCCTGTCGGA
AAACAATTAAGCATGTCCAATCGACGGTTACTATGGGCTGATTCAGAGGA
GGAATATAAAGAAAAAAACAATCTAAGTACATTTCTTTCAGGCAAACAGA
AAGAACCGTCTCTATATTTCTTAAATTCTGGTATACGCAACCACAAAATC
AATTCTTTTGAAAACATTACCAAAAATGTATCTCATACTTACTCATATAA
TGAACCTCCACCCTTAACATATTTAAGTACACGAAACTGTATAAACAGGT
GCAGGTCCCATAATGGTTCTTCCAATCAATCAAAATACTTTATGCTCGCT
CAAAATTTGCATAAATGGATTAGCGGCACTTTAAACGTGTCTAATTTTTC
AAAGGAAAAAGAGGATTCAAATGGTTTTGAATTTTTTAATAATTATTTTG
AGGAAAAACGTGACATACACATCAAACACGAAAAGCGAAAAATGTTTATT
GATTTAAATGATTACACATCTGTTTTGCCAGAAAAACAGCAAAAACTAAA
CAATACGAAATCTTTTGAAAATATGCGCGAACAAATAAATGTAATTAGTA
AAATTGAGAGAAGGGATGATACTTTTTACGTATTTTCATTTAATATGGAT
CATGCACTACTTCCAGCATTAAGTTACAACAGTAGTTATCGCCCAAAATT
GTCGTTGGTACTTCCCTTAGAAAATCCGGGAATTAACGGTAAAATGAAAA
TGATCCAAGTAGACTGTGAAGTATTTAATACAAAAGACTTTGAAGTTAGT
CATCATTTGTTTCCAGCTAAACTTCGTCAAAACGTAATTCCACGGAAGCC
CAACAAGTTAAATATAAAAAAAAGTAGTACTGAAACGCCAGTTAGCAAAA
CCCAAAGAGTGCGTAATTTTTACAAGGTGGGCTCTAGAAATCAAGCTACC
GTCGCATCTAGTTTTAATAAGGAAACAAAGTTTATCAACTAAAAGCTTTC
TAGACCAT
BS15482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RC | 2226 | CG3136-PC | 1..2226 | 17..2242 | 11130 | 100 | Plus |
| Atf6-RB | 2220 | CG3136-PB | 23..2220 | 45..2242 | 10990 | 100 | Plus |
| Atf6-RA | 2220 | CG3136-PA | 23..2220 | 45..2242 | 10990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RC | 2488 | CG3136-RC | 99..2324 | 17..2242 | 11130 | 100 | Plus |
| Atf6-RB | 3959 | CG3136-RB | 1036..3233 | 45..2242 | 10990 | 100 | Plus |
| Atf6-RA | 3076 | CG3136-RA | 153..2350 | 45..2242 | 10990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5152789..5154030 | 1001..2242 | 6210 | 100 | Plus |
| 2R | 25286936 | 2R | 5148201..5149157 | 45..1001 | 4785 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 493..567 | 1804..1730 | 140 | 68.4 | Minus |
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 7310..7384 | 1804..1730 | 140 | 68.4 | Minus |
BS15482.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:55 Download gff for
BS15482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 135..2365 | 17..2250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:34 Download gff for
BS15482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 99..2322 | 17..2240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:36 Download gff for
BS15482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 135..2358 | 17..2240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:25 Download gff for
BS15482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RC | 99..2322 | 17..2240 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:25 Download gff for
BS15482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5144831..5144858 | 17..44 | 100 | -> | Plus |
| 2R | 5148201..5149156 | 45..1000 | 100 | -> | Plus |
| 2R | 5152789..5154028 | 1001..2240 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:34 Download gff for
BS15482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1032336..1032363 | 17..44 | 100 | -> | Plus |
| arm_2R | 1035706..1036661 | 45..1000 | 100 | -> | Plus |
| arm_2R | 1040294..1041533 | 1001..2240 | 100 | | Plus |
BS15482.pep Sequence
Translation from 16 to 2241
> BS15482.pep
MDINEYNLYNDLSLLGEVTENNYDNNIVHDILNSSAFYNDTSLDLSELIP
DLQKEAFGLHFSSNPITSEFSLSSPISGLKQIPSACSGEFKRNVNDNNFQ
LDLTNSRNDLPEPNSSPTRSLNRSNVNGCSNEEAVYPLLVDSDKFDPFFE
PAKVRSPNKEFNSTISNLSDIKNELPETSQDLGFNSYNTSRNNSTLTKSW
PINTELNLDNQVPKTVLPLSRTIYLPSHDYKGLLPTVKCNGDRTLKKNVN
VRSKISNIVIKKKNATFIQSLKESTPSHTMDDKIYKKYQRMIKNRESASL
SRKKRKEYVVSLETRINKLEKECDSLKAENITLRDQIFLLATSCQRESGN
ANGLLHNYSGSERSENKNGRFTSKAKHCNKNNTTATIKKNVAILFAMAFV
VSLNAGNFQKYLNIPNNLEGKSEIEPVGKQLSMSNRRLLWADSEEEYKEK
NNLSTFLSGKQKEPSLYFLNSGIRNHKINSFENITKNVSHTYSYNEPPPL
TYLSTRNCINRCRSHNGSSNQSKYFMLAQNLHKWISGTLNVSNFSKEKED
SNGFEFFNNYFEEKRDIHIKHEKRKMFIDLNDYTSVLPEKQQKLNNTKSF
ENMREQINVISKIERRDDTFYVFSFNMDHALLPALSYNSSYRPKLSLVLP
LENPGINGKMKMIQVDCEVFNTKDFEVSHHLFPAKLRQNVIPRKPNKLNI
KKSSTETPVSKTQRVRNFYKVGSRNQATVASSFNKETKFIN*
BS15482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-PC | 741 | CG3136-PC | 1..741 | 1..741 | 3853 | 100 | Plus |
| Atf6-PB | 739 | CG3136-PB | 8..739 | 10..741 | 3798 | 99.9 | Plus |
| Atf6-PA | 739 | CG3136-PA | 8..739 | 10..741 | 3798 | 99.9 | Plus |
