Clone Sequence Records
BS15483.complete Sequence
3635 bp assembled on 2009-12-07
GenBank Submission: KX803473
> BS15483.complete
GAAGTTATCAGTCGACATGTCATGTCAGCAAGCCTCCAGATTCCATTCAG
CCACCGCTACAGCCACATTAGCCAAGAGCACAGCCACCAGAAGGATTGCC
ACAGCAGCAGCAGCCGCAACAGCAACAGCGATAGCCGCAGCAACAGCCGC
AGCAGCAGCAGCAACGCTGACGCCCGTGGAGAGCATTGCCGGCAAGACGA
CGTCCGAGGACTCGGATCCCTATGCCTTCACCGAGACTGTGGCCGTCACA
CCACCCATTCTATTCAATGCACAGAAATCGAGAGCCCGCCTAACCGACAG
CAATAGAGGCAGCAACAAGAGGCAGACGGCAGCAACAGCTGCGGCCAACA
GAAAGGCGAACCTGGTGGCCCAACTGAGTGTCACAGAGGCAGCAAAGGCG
CAGGCGTCTTTGGCAAGCAACAACACAACGAATTTCCATCATGTCACGCA
ATCTCAGAGACAGTCGACGGCGCTGCAGTTGCAATTGCCACTGCAATCCC
AGTCACAGTCGCAGGCCTCGCCGAAGCGGGCCACCAACGTGTGCATAGTC
CGCCCGCAGCAACAGCAGCTGGAGAAGATAGCCACCTCGGAGTCCTGCCA
GTCGCCGGCAGCACCACCACCGCTTTACGCCCACACTCCATCGCTGTGGC
AGACGCCGCTGCTCATAGACAATGGGCAAAAGCAACAGCTCCTCCAGCAG
CAGCATCAGCAACCGCAACAGCAACAGTCCGTTGCTATTGCGTTGGTCAG
TCCGCCCACATCGCCCGCCTCATTACCTTCGCCCACTCTGCCGCCTGCCA
CCGCTGCAGTGACCGCCATGGTGGCACCGATTTCCGTATCGCCCAAGGGT
GGATTACCTTTGCCGCCATCGAAGTTCCATCACACCACACTGGCGCAACA
TCTGCAGAAGGTGGAGTGCTTGAAAAAAAAGAAATCCTTGCCACTGGCCT
GCCAAAACAACAACAATAACAGCAATTTGCCGAATAACAACAATGTGGAG
TCGCTTAAGAAACCGGTGGTGCAGGGAACGAGCTACAATCAGACTCATCC
GCCACCGCTGATGGTTTTCAATACGGGAACAGTTGCAGTTCCCGCGCAGA
GTCCGCAGACTGCTGCTCCACAGAAACATTCCACCGGCAACAGCGTAGAT
GACAGCGATCTCAACGAGATACCCGTCAATGTTATCTTCAGAAAGCCGCA
AGAGGCAGGCGGAGCGGCGAAAACAGGTGGACCGGGAGGATTAAGTGCAC
CTGTTTCGGGAACGCCGCAAACTCGTCCAGCTGAAGTGAAAATGGTGACT
CCTCTCACGCCGCCCACTCCACCAGAGATGAGCGCACCGCCCCTGCTAGC
GCAAATGCAACCCCCGCAGATACCCACGTCTTGTGTTCCAGCTTTAGCTC
CCAGCTTCAAAGTGTCGTCACCAGCAGTTCTCAGCCCGAAGGTGATCTCA
CCAGCTCCTGCAAGCCCAAAGCTCTTGTGTCCGACAGCACCCGCTTCAAC
GAACTCACTGCAAATTGCGCCAAAAGCTGTTCCAGCCACTACAACCTCAT
CTGCACCAGCATTAGCCACGAAATCAGAACAAATGTCTTCCAAAGTGGCC
AATTTAAACGCCTTCAACCGTCAAGCACCCATAGCTTCAAAGGGCGTTAG
AAATGGCATCACTAACAACAATAACAACAGAAACAGCAATGTCGTTGCGA
AGAAATCGTCACCAACTTCGATGCCGCCTCCAAAGGATCCGATTGCACCG
ATTGCAGCAAACGAGTTGACGGATTCCGAACATCGTCAGCGACGCCGCAA
GCCCGCCTCCGCCTGCAGACGCAGCTTGGACACTCTGAGTGAGAACGAGT
CCTTTTCAGTGGATTCGCCCTACTGCCTACAACAGCATTGGCTGCACTCC
GGCTTTAATAATAAGTCCCACGACGCGCCACTATCGCAAAGTAACCGGCG
TGAGGATCGAATTGCTGTTCGTAAAGGAGCCCTGAGGCGACAAGCGCTGC
AGCTACTGTCTACGCGCTCCCTGCAGGAGCTTCCCATGCGAGCGGCCAAA
CAGCGGCTGCAGTGCGTCCAGAACATGCTGATCAAGTACCAAGATCACGC
TGGCCAGCAGCAGGGAATTGGAATTGGCAACCACTGTCTGGTGGCCAGCT
GCAAGCAGCCCACGCTTAGTATGGCAGCGCACTGCGAGCGTCACATCGTG
AACAACAGCACCCAGCAGCTTTTCCAGCCTTGCGTCGCCTGGCGGATGGA
TGGAACCGCTTGCCAGGCTCCTGTCTTCGATGTGCTGCACACATTGGCGC
TCTGCAAGGTGCACAGCCACCTGCGTTCTGGTATGGATGGAGCCCGTCCA
GCATCGAAACAGCCGCCCGTTAGTTTACCAGTCGCTGGAGTGGCGACTCT
TTATGTGCCTGTGAAGCAGCAGCGAAAGCGCAAGGCTAATACGAATGCCG
TGGCTCGTCCTCAGAAACGTGGTAGGAAGCCGGCGAATGAACCGATTGCT
AACCAGATCAGCAGCCAGATAAACAAACTGATACCTGGGGCAGGAATGCA
GCGTAAAAGCAGCACCACATCGCTTGAGTCCATTGCCAGTAATTCGCAAT
CGTCGGCCACCTCACACTCACAGCCGCCTTACAAGCCCGGAAATGTGTTG
GCCGCTGTACCTGCAGCACAGAACTTGTCCCAACGGTCCATTCCTCCAGC
GCTGGCTCCGCTCAGCAGTGATTTTCAACCCAACCATCAGCAGCAGGAAC
CGCTTTTGGTTCCCAAGTTGGAGGTGGATTCATTGTTTAAATTTGATGCC
GATCAACAGCAAAATCAGCAGCAGCAATCGACTTTGGACCCCAGCTTACT
TTCTTTGGACATTGCGAATATCAAGGCCGAGGAGATTAGCCAAATTGTAG
CACAATTGGCGGCGGCCGGTGGTGATTTACAAAATCCCAACAATAATAAT
AACAACAACATAGGAATCCATAATAACAATAGCGTGCACTTCAACAACAA
CAACAACAATAGTATGAACTACAGCAACAATAACAATAACAGTTTCCCCT
CATTCAACACGGCCTTTGGCAACGCCATGGGCCAGCCAAGCAACACAATT
ACGCACAATGGCCACGCTGTTCCGGCAGTGCTGGCCAATACGGCCGATCT
TCTTGGCCAGGACATGTTTGGTATTTGCGAGAACAGCTCGGCATACGCCA
GTTCCGAGGATACCGGATTGGGCGGTCTCAGCGAGTCGGAGCTGATAGGC
ACTAACGATGCTGATGATATAGCATTGAATGGCGCCCACTTGCTGGAGGA
GCACGATCTGGTAAATGTGTTCGACACGCTGTCAGACGATGCCTTCAACG
AGCTGTTCCAATCCGTGCAACAAGCCGAGTGCGAGGCTATGGACCGGGCT
TTGGACCGGGCCTTACAGCAGACAATGGGCGGCTCGGCGGACAGCGCCTT
TCTTAACGATTTCCTGGACGTCGGCGACGATCTGCTGGCCGATGCTGTGA
TGCACTCACCAAACACGTCCGGCATCGATGCTCCTCCCCTCTTTGGGGAC
AGCAGCAGCGGCGGTGGCAATAGCAGCAGCAACGGCGCCTCCGACATCCG
GGGCTTGGTGCAGACCTAAAAGCTTTCTAGACCAT
BS15483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)L1231-RC | 3603 | CG7832-PC | 1..3603 | 17..3619 | 18015 | 100 | Plus |
| l(3)L1231-RD | 3603 | CG7832-PD | 1..3603 | 17..3619 | 18015 | 100 | Plus |
| l(3)L1231-RA | 3603 | CG7832-PA | 1..3603 | 17..3619 | 18015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)L1231-RC | 4010 | CG7832-RC | 139..3744 | 14..3619 | 18030 | 100 | Plus |
| l(3)L1231-RD | 6007 | CG7832-RD | 139..3744 | 14..3619 | 18030 | 100 | Plus |
| l(3)L1231-RA | 4227 | CG7832-RA | 356..3961 | 14..3619 | 18030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14646727..14648573 | 2118..272 | 9235 | 100 | Minus |
| 3R | 32079331 | 3R | 14645520..14646664 | 3263..2119 | 5725 | 100 | Minus |
| 3R | 32079331 | 3R | 14649010..14649270 | 274..14 | 1305 | 100 | Minus |
| 3R | 32079331 | 3R | 14644935..14645189 | 3619..3365 | 1275 | 100 | Minus |
| 3R | 32079331 | 3R | 14645296..14645398 | 3365..3263 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:45:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6828 | 676..726 | 174 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2395 | 677..726 | 169 | 82 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2407 | 676..726 | 165 | 80.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2390 | 677..727 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6786 | 676..726 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6807 | 676..726 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6900 | 676..726 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2374 | 677..726 | 151 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6774 | 676..726 | 147 | 76.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2527 | 554..726 | 146 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6795 | 677..726 | 142 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2441 | 643..727 | 135 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1169 | 643..729 | 135 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2620..2667 | 681..728 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6765 | 679..726 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2488 | 649..726 | 129 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6753 | 694..726 | 129 | 87.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6877 | 677..727 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2825..2876 | 676..727 | 125 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1132 | 3549..3600 | 125 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6824 | 3549..3598 | 124 | 72 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3230..3323 | 629..724 | 124 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1580 | 677..727 | 120 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1111 | 677..727 | 120 | 70.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 163..195 | 3549..3581 | 120 | 84.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9193..9225 | 3549..3581 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6770 | 3549..3586 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6791 | 3549..3586 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6824 | 3549..3586 | 118 | 78.9 | Plus |
BS15483.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:15 Download gff for
BS15483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 1..3603 | 17..3619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:03 Download gff for
BS15483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 344..3944 | 17..3617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:52 Download gff for
BS15483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 357..3957 | 17..3617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:09 Download gff for
BS15483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 344..3944 | 17..3617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:06 Download gff for
BS15483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 359..3959 | 17..3617 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:06 Download gff for
BS15483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14644937..14645188 | 3366..3617 | 100 | <- | Minus |
| 3R | 14645296..14645397 | 3264..3365 | 100 | <- | Minus |
| 3R | 14645520..14646664 | 2119..3263 | 100 | <- | Minus |
| 3R | 14646727..14648570 | 275..2118 | 100 | <- | Minus |
| 3R | 14649010..14649267 | 17..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:52 Download gff for
BS15483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10470659..10470910 | 3366..3617 | 100 | <- | Minus |
| arm_3R | 10471018..10471119 | 3264..3365 | 100 | <- | Minus |
| arm_3R | 10471242..10472386 | 2119..3263 | 100 | <- | Minus |
| arm_3R | 10472449..10474292 | 275..2118 | 100 | <- | Minus |
| arm_3R | 10474732..10474989 | 17..274 | 100 | | Minus |
BS15483.3prime Sequence
849 bp (774 high quality bases) assembled on 2006-12-21
> BS15483.3prime
ATGGTCTAGAAAGCTTTTAGGTCTGCACCAAGCCCCGGATGTCGGAGGCG
CCGTTGCTGCTGCTATTGCCACCGCCGCTGCTGCTGTCCCCAAAGAGGGG
AGGAGCATCGATGCCGGACGTGTTTGGTGAGTGCATCACAGCATCGGCCA
GCAGATCGTCGCCGACGTCCAGGAAATCGTTAAGAAAGGCGCTGTCCGCC
GAGCCGCCCATTGTCTGCTGTAAGGCCCGGTCCAAAGCCCGGTCCATAGC
CTCGCACTCGGCTTGTTGCACGGATTGGAACAGCTCGTTGAAGGCATCGT
CTGACAGCGTGTCGAACACATTTACCAGATCGTGCTCCTCCAGCAAGTGG
GCGCCATTCAATGCTATATCATCAGCATCGTTAGTGCCTATCAGCTCCGA
CTCGCTGAGACCGCCCAATCCGGTATCCTCGGAACTGGCGTATGCCGAGC
TGTTCTCGCAAATACCAAACATGTCCTGGCCAAGAAGATCGGCCGTATTG
GCCAGCACTGCCGGAACAGCGTGGCCATTGTGCGTAATTGTGTTGCTTGG
CTGGCCCATGGCGTTGCCAAAGGCCGTGTTGAATGAGGGGAAACTGTTAT
TGTTATTGTTGCTGTAGTTCATACTATTGTTGTTGTTGTTGTTGAAGTGC
ACGCTATTGTTATTATGGATTCCTATGTTGTTGTTATTATTATTGTTGGG
ATTTTGTAAATCACCACCGGCCGCCGCCAATTGTGCTACAATTTGGCTAA
TCTCCTCGGCCTTGATATTCGCAATGTCCAAAGAAAGTAAGCTGGGGTCC
AAAGTCGATTGCTGCTGCTGATTTTGCTGTTGATCGGCATCAAATTTAA
BS15483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7832-PA | 3603 | CG7832-RA | 2771..3603 | 849..17 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)L1231-RC | 4010 | CG7832-RC | 2912..3744 | 849..17 | 4165 | 100 | Minus |
| l(3)L1231-RD | 6007 | CG7832-RD | 2912..3744 | 849..17 | 4165 | 100 | Minus |
| l(3)L1231-RA | 4227 | CG7832-RA | 3129..3961 | 849..17 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14645520..14645996 | 373..849 | 2385 | 100 | Plus |
| 3R | 32079331 | 3R | 14644935..14645189 | 17..271 | 1275 | 100 | Plus |
| 3R | 32079331 | 3R | 14645296..14645398 | 271..373 | 515 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2905 | 691..541 | 156 | 57.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1132 | 87..36 | 125 | 71.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6824 | 87..38 | 124 | 72 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 163..195 | 87..55 | 120 | 84.8 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9193..9225 | 87..55 | 120 | 84.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6770 | 87..50 | 118 | 78.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6791 | 87..50 | 118 | 78.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6824 | 87..50 | 118 | 78.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2397 | 87..38 | 114 | 71.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6842 | 87..53 | 112 | 80 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1114..1148 | 87..53 | 112 | 80 | Minus |
BS15483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:09 Download gff for
BS15483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7832-PA | 2773..3603 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:29 Download gff for
BS15483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7832-PA | 2773..3603 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:04:15 Download gff for
BS15483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 3127..3959 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:27 Download gff for
BS15483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 3129..3961 | 17..849 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:27 Download gff for
BS15483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14644935..14645188 | 17..270 | 100 | <- | Plus |
| 3R | 14645296..14645397 | 271..372 | 100 | <- | Plus |
| 3R | 14645520..14645996 | 373..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:04:15 Download gff for
BS15483.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10470657..10470910 | 17..270 | 100 | <- | Plus |
| arm_3R | 10471018..10471119 | 271..372 | 100 | <- | Plus |
| arm_3R | 10471242..10471718 | 373..849 | 100 | | Plus |
BS15483.5prime Sequence
818 bp (795 high quality bases) assembled on 2006-12-21
> BS15483.5prime
GAAGTTATCACTCGACATGTCATGTCAGCAAGCCTCCAGATTCCATTCAG
CCACCGCTACAGCCACATTAGCCAAGAGCACAGCCACCAGAAGGATTGCC
ACAGCAGCAGCAGCCGCAACAGCAACAGCGATAGCCGCAGCAACAGCCGC
AGCAGCAGCAGCAACGCTGACGCCCGTGGAGAGCATTGCCGGCAAGACGA
CGTCCGAGGACTCGGATCCCTATGCCTTCACCGAGACTGTGGCCGTCACA
CCACCCATTCTATTCAATGCACAGAAATCGAGAGCCCGCCTAACCGACAG
CAATAGAGGCAGCAACAAGAGGCAGACGGCAGCAACAGCTGCGGCCAACA
GAAAGGCGAACCTGGTGGCCCAACTGAGTGTCACAGAGGCAGCAAAGGCG
CAGGCGTCTTTGGCAAGCAACAACACAACGAATTTCCATCATGTCACGCA
ATCTCAGAGACAGTCGACGGCGCTGCAGTTGCAATTGCCACTGCAATCCC
AGTCACAGTCGCAGGCCTCGCCGAAGCGGGCCACCAACGTGTGCATAGTC
CGCCCGCAGCAACAGCAGCTGGAGAAGATAGCCACCTCGGAGTCCTGCCA
GTCGCCGGCAGCACCACCACCGCTTTACGCCCACACTCCATCGCTGTGGC
AGACGCCGCTGCTCATAGACAATGGGCAAAAGCAACAGCTCCTCCAGCAG
CAGCATCAGCAACCGCAACAGCAACAGTCCGTTGCTATTGCGTTGGTCAG
TCCGCCCACATCGCCCGCCTCATTACCTTCGCCCACTCTGCCGCCTGCCC
ACGCTGCAGTGACCGCCA
BS15483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7832-PA | 3603 | CG7832-RA | 1..802 | 17..818 | 3960 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)L1231-RC | 4010 | CG7832-RC | 139..943 | 14..818 | 3995 | 99.8 | Plus |
| l(3)L1231-RD | 6007 | CG7832-RD | 139..943 | 14..818 | 3995 | 99.8 | Plus |
| l(3)L1231-RA | 4227 | CG7832-RA | 356..1160 | 14..818 | 3995 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14648027..14648573 | 818..272 | 2705 | 99.6 | Minus |
| 3R | 32079331 | 3R | 14649010..14649270 | 274..14 | 1305 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 16:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6828 | 676..726 | 174 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2395 | 677..726 | 169 | 82 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2407 | 676..726 | 165 | 80.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2390 | 677..727 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6786 | 676..726 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6807 | 676..726 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6900 | 676..726 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2374 | 677..726 | 151 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6774 | 676..726 | 147 | 76.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2527 | 554..726 | 146 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6795 | 677..726 | 142 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2441 | 643..727 | 135 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1169 | 643..729 | 135 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2620..2667 | 681..728 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6765 | 679..726 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2488 | 649..726 | 129 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6753 | 694..726 | 129 | 87.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6877 | 677..727 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2825..2876 | 676..727 | 125 | 71.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3230..3323 | 629..724 | 124 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1580 | 677..727 | 120 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1111 | 677..727 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2341 | 695..726 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6536..6572 | 695..731 | 113 | 78.4 | Plus |
BS15483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:11 Download gff for
BS15483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7832-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:31 Download gff for
BS15483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7832-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:30:51 Download gff for
BS15483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 349..1157 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:25 Download gff for
BS15483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 351..1159 | 9..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:25 Download gff for
BS15483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14648028..14648570 | 275..817 | 99 | <- | Minus |
| 3R | 14649010..14649275 | 9..274 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:30:51 Download gff for
BS15483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10473750..10474292 | 275..817 | 99 | <- | Minus |
| arm_3R | 10474732..10474997 | 9..274 | 99 | | Minus |
BS15483.pep Sequence
Translation from 16 to 3618
> BS15483.pep
MSCQQASRFHSATATATLAKSTATRRIATAAAAATATAIAAATAAAAAAT
LTPVESIAGKTTSEDSDPYAFTETVAVTPPILFNAQKSRARLTDSNRGSN
KRQTAATAAANRKANLVAQLSVTEAAKAQASLASNNTTNFHHVTQSQRQS
TALQLQLPLQSQSQSQASPKRATNVCIVRPQQQQLEKIATSESCQSPAAP
PPLYAHTPSLWQTPLLIDNGQKQQLLQQQHQQPQQQQSVAIALVSPPTSP
ASLPSPTLPPATAAVTAMVAPISVSPKGGLPLPPSKFHHTTLAQHLQKVE
CLKKKKSLPLACQNNNNNSNLPNNNNVESLKKPVVQGTSYNQTHPPPLMV
FNTGTVAVPAQSPQTAAPQKHSTGNSVDDSDLNEIPVNVIFRKPQEAGGA
AKTGGPGGLSAPVSGTPQTRPAEVKMVTPLTPPTPPEMSAPPLLAQMQPP
QIPTSCVPALAPSFKVSSPAVLSPKVISPAPASPKLLCPTAPASTNSLQI
APKAVPATTTSSAPALATKSEQMSSKVANLNAFNRQAPIASKGVRNGITN
NNNNRNSNVVAKKSSPTSMPPPKDPIAPIAANELTDSEHRQRRRKPASAC
RRSLDTLSENESFSVDSPYCLQQHWLHSGFNNKSHDAPLSQSNRREDRIA
VRKGALRRQALQLLSTRSLQELPMRAAKQRLQCVQNMLIKYQDHAGQQQG
IGIGNHCLVASCKQPTLSMAAHCERHIVNNSTQQLFQPCVAWRMDGTACQ
APVFDVLHTLALCKVHSHLRSGMDGARPASKQPPVSLPVAGVATLYVPVK
QQRKRKANTNAVARPQKRGRKPANEPIANQISSQINKLIPGAGMQRKSST
TSLESIASNSQSSATSHSQPPYKPGNVLAAVPAAQNLSQRSIPPALAPLS
SDFQPNHQQQEPLLVPKLEVDSLFKFDADQQQNQQQQSTLDPSLLSLDIA
NIKAEEISQIVAQLAAAGGDLQNPNNNNNNNIGIHNNNSVHFNNNNNNSM
NYSNNNNNSFPSFNTAFGNAMGQPSNTITHNGHAVPAVLANTADLLGQDM
FGICENSSAYASSEDTGLGGLSESELIGTNDADDIALNGAHLLEEHDLVN
VFDTLSDDAFNELFQSVQQAECEAMDRALDRALQQTMGGSADSAFLNDFL
DVGDDLLADAVMHSPNTSGIDAPPLFGDSSSGGGNSSSNGASDIRGLVQT
*
BS15483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)L1231-PC | 1200 | CG7832-PC | 1..1200 | 1..1200 | 6140 | 100 | Plus |
| l(3)L1231-PD | 1200 | CG7832-PD | 1..1200 | 1..1200 | 6140 | 100 | Plus |
| l(3)L1231-PA | 1200 | CG7832-PA | 1..1200 | 1..1200 | 6140 | 100 | Plus |
