Clone Sequence Records
BS15485.3prime Sequence
801 bp (783 high quality bases) assembled on 2006-12-21
> BS15485.3prime
ATGGTCTAGAAAGCTTTTACTGGTCCAAGATGCGCATATTGCCAGATACA
ATCTTGTTCTCCAGAATGGCTCCAGCTGGGATATCGATACGATCGCCATG
GTTAGCAATGATGATCACAGTGCCGCGCAAAGAAACGCCACGACCGAAAG
TCACATCTCCGCTCACGGTCAAGTGATCCAGCTCAATGATGTCCGGGATG
TTGGCAAAGCGACCCAGGAACTCCTTGACCTTCGAGAAGTGGTTCTCTCC
CAGCTTGACGAGCGGCGTGGTAGGGAACATTCGCTGTGGCGACATTACCA
GGCTGCCGTTCTTAAGCGTATATAAATTTGACATGACCAGCAGCAGATCT
GAAGATTTCTTCACGGGCAAGAAACGGGAACGCGGCACATTGATGCCGAT
GGCGCCATCAAAGCACTTCATGGCCGCACCCACAGCAGTCTCCAGCTGAA
TGACACGGGTTCCGTTCTCCAGCGTCTTGTTGTTCACAATAATTTCCATG
TTTAAGGTACGCTCACGCAAAACGCGATCAATGGCTGCCAGGTTGGCCCA
AATGTTGTTGGTGTTAAAGAACTTGAAGGTCTTAACCGACTTAAAGTCAT
CCACATGCTCTGGTGGCACTTGAGCAATTTCCAACAGGCGCAGCTTGTTT
TCCATTTGAATGAGAGTACCACCCTTAACGTCAGCACGGGTCTTGTCGGT
GACCTCCATGACAAACTCCACTGGAGTAGTGGCCCGCTCCTCGCCCACCA
GCTTATTGAGGATGTTCAGATCGACGGTGGCGCCCAGGTTATCGATGTTG
G
BS15485.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4347-PC | 1542 | UGP-RC | 758..1538 | 801..21 | 3905 | 100 | Minus |
| CG4347-PA | 1563 | UGP-RA | 779..1559 | 801..21 | 3905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RE | 2686 | CG4347-RE | 1026..1811 | 801..16 | 3915 | 99.9 | Minus |
| UGP-RD | 2093 | CG4347-RD | 1046..1831 | 801..16 | 3915 | 99.9 | Minus |
| UGP-RA | 2102 | CG4347-RA | 1032..1817 | 801..16 | 3915 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9351917..9352329 | 124..536 | 2065 | 100 | Plus |
| 3L | 28110227 | 3L | 9352405..9352545 | 535..675 | 705 | 100 | Plus |
| 3L | 28110227 | 3L | 9352601..9352729 | 673..801 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 9351742..9351850 | 16..124 | 530 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-01-31 03:29:48 has no hits.
BS15485.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:12 Download gff for
BS15485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4347-PC | 758..1542 | 17..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:32 Download gff for
BS15485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4347-PA | 779..1563 | 17..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:48:30 Download gff for
BS15485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 1032..1817 | 16..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:21:24 Download gff for
BS15485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 1032..1817 | 16..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:21:24 Download gff for
BS15485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9351742..9351850 | 16..124 | 99 | <- | Plus |
| 3L | 9351918..9352327 | 125..534 | 100 | <- | Plus |
| 3L | 9352405..9352543 | 535..673 | 100 | <- | Plus |
| 3L | 9352602..9352729 | 674..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:48:30 Download gff for
BS15485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9344842..9344950 | 16..124 | 99 | <- | Plus |
| arm_3L | 9345018..9345427 | 125..534 | 100 | <- | Plus |
| arm_3L | 9345505..9345643 | 535..673 | 100 | <- | Plus |
| arm_3L | 9345702..9345829 | 674..801 | 100 | | Plus |
BS15485.complete Sequence
1595 bp assembled on 2010-06-30
GenBank Submission: KX804281
> BS15485.complete
GAAGTTATCAGTCGACATGCCCTCCGGTATAAGACCCATCGATGTTCTGC
TGGAACGTGCCGGTGTGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAG
GAGTTCCATGAGGTGACCAAACGGGATGCACTTCGTCTGCTGGAGCACGA
TGTGGACCGTCTGCTGGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCA
AGGCAGAAATGGGTCGTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAA
GAGGGTCCCGCATTGGACTGGAACAAGATTCAGAAGCTGCCTGAGAATGC
TGTGATGAACTACTCGAATCTTAAGTCGCCCAAGAACGAGCAGAATGAGA
TCCGCAACATGTTGGATAAATTGGTGGTCATCAAGCTGAACGGTGGTTTG
GGCACCTCAATGGGTTGCCATGGTCCCAAGAGTGTGATTCCTGTGCGTTC
GGATCTTACTTTCCTGGATCTGACCGTGCAGCAAATCGAGCATCTCAACA
AGACCTACGATGCCAATGTTCCGCTGGTACTGATGAACTCCTTTAACACC
GACGAGGATACCGAGAAGATCGTGCGCAAGTACAAAGGATTCCGTGTGCA
GATCCACACCTTCAACCAGAGCTGCTTCCCGCGCATTAGTCGCGAGCACT
ACCTGCCGGTGGCCAAAGACTTTGATGTCGAAAAGGATATGGAAGCCTGG
TATCCACCTGGACACGGTGACTTCTACGATACCTTCCGCAACTCTGGCCT
GCTGAAGAAGTTCATCGAGGAGGGCCGCGAGTATTGTTTCTTGTCCAACA
TCGATAACCTGGGCGCCACCGTCGATCTGAACATCCTCAATAAGCTGGTG
GGCGAGGAGCGGGCCACTACTCCAGTGGAGTTTGTCATGGAGGTCACCGA
CAAGACCCGTGCTGACGTTAAGGGTGGTACTCTCATTCAAATGGAAAACA
AGCTGCGCCTGTTGGAAATTGCTCAAGTGCCACCAGAGCATGTGGATGAC
TTTAAGTCGGTTAAGACCTTCAAGTTCTTTAACACCAACAACATTTGGGC
CAACCTGGCAGCCATTGATCGCGTTTTGCGTGAGCGTACCTTAAACATGG
AAATTATTGTGAACAACAAGACGCTGGAGAACGGAACCCGTGTCATTCAG
CTGGAGACTGCTGTGGGTGCGGCCATGAAGTGCTTTGATGGCGCCATCGG
CATCAATGTGCCGCGTTCCCGTTTCTTGCCCGTGAAGAAATCTTCAGATC
TGCTGCTGGTCATGTCAAATTTATATACGCTTAAGAACGGCAGCCTGGTA
ATGTCGCCACAGCGAATGTTCCCTACCACGCCGCTCGTCAAGCTGGGAGA
GAACCACTTCTCGAAGGTCAAGGAGTTCCTGGGTCGCTTTGCCAACATCC
CGGACATCATTGAGCTGGATCACTTGACCGTGAGCGGAGATGTGACTTTC
GGTCGTGGCGTTTCTTTGCGCGGCACTGTGATCATCATTGCTAACCATGG
CGATCGTATCGATATCCCAGCTGGAGCCATTCTGGAGAACAAGATTGTAT
CTGGCAATATGCGCATCTTGGACCACTAAAAGCTTTCTAGACCAT
BS15485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RA | 1563 | CG4347-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| UGP-RE | 1557 | CG4347-PE | 1..1557 | 17..1579 | 7690 | 99.6 | Plus |
| UGP-RC | 1542 | CG4347-PC | 28..1542 | 65..1579 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RA | 2102 | CG4347-RA | 254..1817 | 17..1580 | 7820 | 100 | Plus |
| UGP-RE | 2686 | CG4347-RE | 254..1811 | 17..1580 | 7695 | 99.6 | Plus |
| UGP-RC | 2099 | CG4347-RC | 322..1837 | 65..1580 | 7580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9351917..9352329 | 1472..1060 | 2065 | 100 | Minus |
| 3L | 28110227 | 3L | 9352882..9353230 | 696..348 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352601..9352827 | 923..697 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354074 | 251..65 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 9352405..9352545 | 1061..921 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 9351742..9351850 | 1580..1472 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 343..250 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 9357581..9357630 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:35:51 has no hits.
BS15485.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-30 18:17:12 Download gff for
BS15485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 262..1822 | 17..1577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:06 Download gff for
BS15485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 254..1814 | 17..1577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:22 Download gff for
BS15485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 254..1814 | 17..1577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:22 Download gff for
BS15485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9351745..9351850 | 1472..1577 | 100 | <- | Minus |
| 3L | 9351918..9352327 | 1062..1471 | 100 | <- | Minus |
| 3L | 9352405..9352543 | 923..1061 | 100 | <- | Minus |
| 3L | 9352602..9352827 | 697..922 | 100 | <- | Minus |
| 3L | 9352882..9353228 | 350..696 | 100 | <- | Minus |
| 3L | 9353729..9353829 | 252..349 | 96 | <- | Minus |
| 3L | 9353888..9354074 | 65..251 | 100 | <- | Minus |
| 3L | 9357583..9357630 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:06 Download gff for
BS15485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9344845..9344950 | 1472..1577 | 100 | <- | Minus |
| arm_3L | 9345018..9345427 | 1062..1471 | 100 | <- | Minus |
| arm_3L | 9345505..9345643 | 923..1061 | 100 | <- | Minus |
| arm_3L | 9345702..9345927 | 697..922 | 100 | <- | Minus |
| arm_3L | 9345982..9346328 | 350..696 | 100 | <- | Minus |
| arm_3L | 9346829..9346929 | 252..349 | 96 | <- | Minus |
| arm_3L | 9346988..9347174 | 65..251 | 100 | <- | Minus |
| arm_3L | 9350683..9350730 | 17..64 | 100 | | Minus |
BS15485.pep Sequence
Translation from 16 to 1578
> BS15485.pep
MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL
ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS
NLKSPKNEQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFL
DLTVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFN
QSCFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFI
EEGREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRAD
VKGGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAI
DRVLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPR
SRFLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSK
VKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDI
PAGAILENKIVSGNMRILDH*
BS15485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-PA | 520 | CG4347-PA | 1..520 | 1..520 | 2686 | 100 | Plus |
| UGP-PE | 518 | CG4347-PE | 1..518 | 1..520 | 2662 | 99.6 | Plus |
| UGP-PC | 513 | CG4347-PC | 8..513 | 15..520 | 2608 | 99.8 | Plus |
| UGP-PD | 511 | CG4347-PD | 8..511 | 15..520 | 2584 | 99.4 | Plus |
