Clone Sequence Records
BS15486.3prime Sequence
876 bp (844 high quality bases) assembled on 2006-12-21
> BS15486.3prime
ATGGTCTAGAAAGCTTCTAATGTGGCGAGGACTCAGGCTCACTGGGTTCG
AATCCACCGTCGCACATTGGTCGATCACACGAAAACGCTGCTGTGGACTT
TGGCAAGTTGACTACATCGCGCCGAAATGTTGACATATTTTGGGTGAATT
TTTCTTTGTTTTTGCTGGAAACATTTCGCTCAATTCCGACCATTAGATCA
TCGAACCATTGCGCCATTGTCTGTTGCTTTTCAATTGGTTGAGCGCAGAT
AATTCTGTCCTTCAACGATCGGTAATAGTCCTCATAAAGCAATATGAGAA
CCAGTAATGGACGTGACATCGACCACTGATTTCGACAATCCTCTTGCAAA
ACGTTGTTAAGTAATGACGACATCATACTCTGCAGTAACTCAGAATTCAT
TTCAACAACTTTTAAAAACTGCACATTTTCTTGATTTAAGCTACGGAGCT
TTTTGTTTGGAAATGTGGAAACTTTCATCTGGAGCTGTTTAAAGATGTAC
GAAACAATACTATCCAAAATTGTGCAGCAACTTATATAAGTGGCGGAGTC
TAATGCGGCCAGTCCTTTGGTAAGACTTTTCAAAATGTAAACGAATGCGG
CTGGCTCCAATGCAGCCAAATAAGAAACATGATCTTGCGATAAACAATTT
AGTAAGTTGTAGTAAGCTGTTGATAATTTGGGATATTCAATTAAATCTCT
TTGTTCTATGGTGAGAATCAACTTGGCGATAATATTGAGTACACTGTCCA
ATGTATCGTCTCCGTACAATTTGAATACTCCACAATTGACATAGTTACCG
CCAAGTGAGTTCTTTAATATCAAAAAGCATATGGCAATTCCCTTTAGTCT
CATCGGGTAAAGTCGTTCCCTTGGAA
BS15486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33180-PB | 3297 | Ranbp16-RB | 2438..3297 | 876..17 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp16-RG | 3577 | CG33180-RG | 2572..3431 | 876..17 | 4300 | 100 | Minus |
| Ranbp16-RH | 3707 | CG33180-RH | 2702..3561 | 876..17 | 4300 | 100 | Minus |
| Ranbp16-RB | 3515 | CG33180-RB | 2510..3369 | 876..17 | 4300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15930322..15930510 | 688..876 | 945 | 100 | Plus |
| X | 23542271 | X | 15929658..15929797 | 270..409 | 700 | 100 | Plus |
| X | 23542271 | X | 15930117..15930255 | 550..688 | 695 | 100 | Plus |
| X | 23542271 | X | 15929472..15929592 | 150..270 | 605 | 100 | Plus |
| X | 23542271 | X | 15929981..15930060 | 472..551 | 400 | 100 | Plus |
| X | 23542271 | X | 15928860..15928933 | 17..90 | 370 | 100 | Plus |
| X | 23542271 | X | 15929851..15929917 | 407..473 | 335 | 100 | Plus |
| X | 23542271 | X | 15929341..15929402 | 88..149 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 02:24:46 has no hits.
BS15486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:13 Download gff for
BS15486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33180-PB | 2440..3297 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:34 Download gff for
BS15486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33180-PB | 2440..3297 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:27:51 Download gff for
BS15486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RB | 2486..3349 | 12..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:01:21 Download gff for
BS15486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RB | 2510..3373 | 12..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:01:21 Download gff for
BS15486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15930323..15930510 | 689..876 | 100 | | Plus |
| X | 15929341..15929402 | 88..149 | 100 | <- | Plus |
| X | 15929472..15929591 | 150..269 | 100 | <- | Plus |
| X | 15929658..15929797 | 270..409 | 100 | <- | Plus |
| X | 15929854..15929915 | 410..471 | 100 | <- | Plus |
| X | 15929981..15930058 | 472..549 | 100 | <- | Plus |
| X | 15930117..15930255 | 550..688 | 100 | <- | Plus |
| X | 15928856..15928930 | 12..87 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:27:51 Download gff for
BS15486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15824014..15824091 | 472..549 | 100 | <- | Plus |
| arm_X | 15824150..15824288 | 550..688 | 100 | <- | Plus |
| arm_X | 15822889..15822963 | 12..87 | 97 | <- | Plus |
| arm_X | 15823374..15823435 | 88..149 | 100 | <- | Plus |
| arm_X | 15823505..15823624 | 150..269 | 100 | <- | Plus |
| arm_X | 15823691..15823830 | 270..409 | 100 | <- | Plus |
| arm_X | 15823887..15823948 | 410..471 | 100 | <- | Plus |
| arm_X | 15824356..15824543 | 689..876 | 100 | | Plus |
BS15486.complete Sequence
3329 bp assembled on 2010-07-15
GenBank Submission: KX805838
> BS15486.complete
GAAGTTATCAGTCGACATGGATATACAACAACTGGAGGTGCTGTGCAAGC
AACTCTACGAAGCCACAGACATCAGAATTCGTTCCGAGGCGGAAAAAGCC
CTAGTCACATTCGTAAGCAGCCAGGATGCGCTGCCCAAATGCCAGTTGCT
GCTGCAAAGAGCCGATTCCAGCTACGCCCAGTTGCTGGCCGCTTCCACAC
TTACCAAACTCATTCAGGGATTGAGTCTACAGGAGCGGATCGACATTCGC
AGCTATGCCCTCAACTATCTGGCCACTGTGCCGAATCTGCAGCACTTCGT
TGTCCAGGCATTGGTCAGTCTGCTGGCGAAGCTCACAAAGTACGGATGGT
TCGATTCGTACAAGGAGGAAATGGTCTTCCAAAACCTCTTGGAAGATGTC
AAGAAGTTCTTGCAGGGCTCCGTTGAGCACTGCACCATTGGCGTCCAAAT
TCTATCACAACTGGTGTGTGAGATGAACTCAGTTGTCGAGATGGACGTGC
AGGTGTCCTTTTCCAAAATGCGCAAAATAGCCACATCTTTTCGGGACCAG
CAACTCCTAGAAACCTTTTTGCTATCCTGCTCTCTACTGGTCTCGGCCCG
TGATAACAGCAAAAACATAAGCTTCATGGATGAGTCGCAGCAAGCGTTAA
TATCACACGTCTTACGTTTAACGAAGAATTGTCTGAGCTTCGACTTCATT
GGCAGTTCGACAGATGAATCTGCTGATGATATGAACAACGTTCAGATACC
CACAGCTTGGCGTCCTGCATTCTTAGATTCGAACACACTTAAACTCTTTT
TTGATTTATATCAAATTTTGCCCAATGGTTTAGCTAGCTACTCCATATCC
TGCCTGGTTCAAATTACATCTGTGCGTCGCTCACTTTTTAATAATTCTGA
AAGAACAAAATTTCTAACGCACTTGGTCGAAGGAGTCAAAGATATTTTAA
CAACTCTGCACGGCTTGAGTGACCCAGATAACTATCACGAGTTCTGCCGT
TTGCTGGCTCGCCTTAAGTCTAATTATCAATTGGGTGAACTTATAGCGGT
GCCATGTTATCCAGAAGCAATTCAACTGATAGCTAAGTTTACTGTTGAAT
CCCTGCACCTATGGCTTTTTGCACCGAACAGTGTACATTACTTACTCACC
CTTTGGCAACGTATGGTTGCGTCTGTACCATATGTTAAGTCGCCGGATCC
GCATTTGCTAGGTACTTACACGCCGGAGGTTATTAAGGCGTATATTGAAT
CGCGCCTGGATGCTGTTCCTGTAATTATCCGTGACAATTTAGATGATCCA
CTCGACGATTTTTGCATGGTGCAGCAACAGCTGGAACAATTGTCGGTAAT
CGAAAGGTGCGAGTACAACAAGACGTGTAATCTTCTTGTCCAGCATTTCG
ATCAGAAGGCCCGAGAGTATGAGAATCTGTTGCAGACACCTAACGCCAAT
AGCATAGATATTACCATACATGAGCTACAACTAACGTGGTTGGTGTATAT
AATCGGGTCGGCCATAGTGGGTCGTCTCACCGTCGCGACCAGCGATGAGC
ATGACACAATGGACGCGGAGCTAGTGATAAGAGTCCTGCAACTGATGACC
CTCACCGATGCTCGATTGCCTCAAGCTGGTTGCGAAAAGCTGGAGCTGGC
GATACTGAGCTTTTTGGACCAGGTCCGAAAAATGCACAGCAGCGAGCAGG
CACAGAAAGCCAATTTGAACAAGAGACTTAGCGAAGTTTTTGGACTGACT
GACGAGCAAATGCTTTTAAGTTTTATTAATCGCAAAATCATTACAAATTT
AAAGTTTTGGGGACGCTCTGAGTCGATTATCACCAAAACCCTTATGTTAT
TATCCGAACTTTCTGTGCATTTTAATTCTGTGCGCAAACTGGCACGTCTA
GAAGAAGTCCAGTTTATGCTCACACATCACACAAGCGAACATTTCCCATT
CCTAGGAACTAATTCCTCTTTGAGCGAGATGAGATGTCGCACCATGTTCT
ACACTTCATTGGGCCGCTTACTGATGTTCGATTTGGGCGAGGATGAAGAA
AGATTCTACAATTTTTTGGAACCCTTAACGAATCAATTCGAGTCCCTTGG
CTCAGTGATGATGGACAATAACATATTTTCTAATGAAGAGGCTAAGAAGG
TCATTATTGGTTTGGCTCGAGACCTTCGTGGATTGGCACTGCCGCTCAAC
GCCCGCATTCAATATACCATGCTTTTTGAATGGCTATATTATGCGGACTA
TTTGCCGATACTCTTGCGTGCGATGGACCTGTGGGCTCACGATCCTGCCG
TTACGACACCAATTCTCAAATTGTTTGCCGAGCTGGTGCATTGCCGCACC
CAAAGACTGGCAGGCAATGTATCCAGCCCCATGGGCATTCTCCTATTCCG
CGAGGCCTCGAAACTTATTTGTATATACGGTAATCGCATTCTGCACCAGG
AAGTTCCAAGGGAACGACTTTACCCGATGAGACTAAAGGGAATTGCCATA
TGCTTTTTGATATTAAAGAACTCACTTGGCGGTAACTATGTCAATTGTGG
AGTATTCAAATTGTACGGAGACGATACATTGGACAGTGTACTCAATATTA
TCGCCAAGTTGATTCTCACCATAGAACAAAGAGATTTAATTGAATATCCC
AAATTATCAACAGCTTACTACAACTTACTAAATTGTTTATCGCAAGATCA
TGTTTCTTATTTGGCTGCATTGGAGCCAGCCGCATTCGTTTACATTTTGA
AAAGTCTTACCAAAGGACTGGCCGCATTAGACTCCGCCACTTATATAAGT
TGCTGCACAATTTTGGATAGTATTGTTTCGTACATCTTTAAACAGCTCCA
GATGAAAGTTTCCACATTTCCAAACAAAAAGCTCCGTAGCTTAAATCAAG
AAAATGTGCAGTTTTTAAAAGTTGTTGAAATGAATTCTGAGTTACTGCAG
AGTATGATGTCGTCATTACTTAACAACGTTTTGCAAGAGGATTGTCGAAA
TCAGTGGTCGATGTCACGTCCATTACTGGTTCTCATATTGCTTTATGAGG
ACTATTACCGATCGTTGAAGGACAGAATTATCTGCGCTCAACCAATTGAA
AAGCAACAGACAATGGCGCAATGGTTCGATGATCTAATGGTCGGAATTGA
GCGAAATGTTTCCAGCAAAAACAAAGAAAAATTCACCCAAAATATGTCAA
CATTTCGGCGCGATGTAGTCAACTTGCCAAAGTCCACAGCAGCGTTTTCG
TGTGATCGACCAATGTGCGACGGTGGATTCGAACCCAGTGAGCCTGAGTC
CTCGCCACATTAGAAGCTTTCTAGACCAT
BS15486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp16-RH | 3297 | CG33180-PH | 1..3297 | 17..3313 | 16485 | 100 | Plus |
| Ranbp16-RB | 3297 | CG33180-PB | 1..3297 | 17..3313 | 16485 | 100 | Plus |
| Ranbp16-RE | 3243 | CG33180-PE | 1..3227 | 17..3243 | 16135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp16-RH | 3707 | CG33180-RH | 265..3561 | 17..3313 | 16485 | 100 | Plus |
| Ranbp16-RB | 3515 | CG33180-RB | 73..3369 | 17..3313 | 16485 | 100 | Plus |
| Ranbp16-RG | 3577 | CG33180-RG | 137..3431 | 19..3313 | 16475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15931307..15931986 | 1788..1109 | 3400 | 100 | Minus |
| X | 23542271 | X | 15930322..15930882 | 2642..2082 | 2805 | 100 | Minus |
| X | 23542271 | X | 15933142..15933539 | 416..19 | 1990 | 100 | Minus |
| X | 23542271 | X | 15930938..15931234 | 2085..1789 | 1470 | 99.7 | Minus |
| X | 23542271 | X | 15932848..15933081 | 647..414 | 1170 | 100 | Minus |
| X | 23542271 | X | 15932245..15932463 | 962..744 | 1095 | 100 | Minus |
| X | 23542271 | X | 15932039..15932190 | 1113..962 | 745 | 99.3 | Minus |
| X | 23542271 | X | 15929658..15929797 | 3060..2921 | 700 | 100 | Minus |
| X | 23542271 | X | 15930117..15930255 | 2780..2642 | 695 | 100 | Minus |
| X | 23542271 | X | 15929472..15929592 | 3180..3060 | 605 | 100 | Minus |
| X | 23542271 | X | 15932522..15932621 | 745..646 | 500 | 100 | Minus |
| X | 23542271 | X | 15929981..15930060 | 2858..2779 | 400 | 100 | Minus |
| X | 23542271 | X | 15928860..15928933 | 3313..3240 | 370 | 100 | Minus |
| X | 23542271 | X | 15929851..15929917 | 2923..2857 | 335 | 100 | Minus |
| X | 23542271 | X | 15929341..15929402 | 3242..3181 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:36:06 has no hits.
BS15486.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:20 Download gff for
BS15486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RB | 52..3348 | 17..3313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:02 Download gff for
BS15486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RB | 49..3345 | 17..3313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:13 Download gff for
BS15486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RB | 73..3369 | 17..3313 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:13 Download gff for
BS15486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15930117..15930255 | 2642..2780 | 100 | <- | Minus |
| X | 15928860..15928930 | 3243..3313 | 100 | <- | Minus |
| X | 15929341..15929402 | 3181..3242 | 100 | <- | Minus |
| X | 15929472..15929591 | 3061..3180 | 100 | <- | Minus |
| X | 15929658..15929797 | 2921..3060 | 100 | <- | Minus |
| X | 15929854..15929915 | 2859..2920 | 100 | <- | Minus |
| X | 15929981..15930058 | 2781..2858 | 100 | <- | Minus |
| X | 15930323..15930882 | 2082..2641 | 100 | <- | Minus |
| X | 15930942..15931234 | 1789..2081 | 100 | <- | Minus |
| X | 15931307..15931986 | 1109..1788 | 100 | <- | Minus |
| X | 15932044..15932190 | 962..1108 | 100 | <- | Minus |
| X | 15932246..15932461 | 746..961 | 100 | <- | Minus |
| X | 15932522..15932621 | 646..745 | 100 | <- | Minus |
| X | 15932850..15933079 | 416..645 | 100 | <- | Minus |
| X | 15933143..15933540 | 17..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:02 Download gff for
BS15486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15824150..15824288 | 2642..2780 | 100 | <- | Minus |
| arm_X | 15823691..15823830 | 2921..3060 | 100 | <- | Minus |
| arm_X | 15823887..15823948 | 2859..2920 | 100 | <- | Minus |
| arm_X | 15822893..15822963 | 3243..3313 | 100 | <- | Minus |
| arm_X | 15823374..15823435 | 3181..3242 | 100 | <- | Minus |
| arm_X | 15823505..15823624 | 3061..3180 | 100 | <- | Minus |
| arm_X | 15824014..15824091 | 2781..2858 | 100 | <- | Minus |
| arm_X | 15824356..15824915 | 2082..2641 | 100 | <- | Minus |
| arm_X | 15824975..15825267 | 1789..2081 | 100 | <- | Minus |
| arm_X | 15825340..15826019 | 1109..1788 | 100 | <- | Minus |
| arm_X | 15826077..15826223 | 962..1108 | 100 | <- | Minus |
| arm_X | 15826279..15826494 | 746..961 | 100 | <- | Minus |
| arm_X | 15826555..15826654 | 646..745 | 100 | <- | Minus |
| arm_X | 15826883..15827112 | 416..645 | 100 | <- | Minus |
| arm_X | 15827176..15827573 | 17..415 | 99 | | Minus |
BS15486.pep Sequence
Translation from 16 to 3312
> BS15486.pep
MDIQQLEVLCKQLYEATDIRIRSEAEKALVTFVSSQDALPKCQLLLQRAD
SSYAQLLAASTLTKLIQGLSLQERIDIRSYALNYLATVPNLQHFVVQALV
SLLAKLTKYGWFDSYKEEMVFQNLLEDVKKFLQGSVEHCTIGVQILSQLV
CEMNSVVEMDVQVSFSKMRKIATSFRDQQLLETFLLSCSLLVSARDNSKN
ISFMDESQQALISHVLRLTKNCLSFDFIGSSTDESADDMNNVQIPTAWRP
AFLDSNTLKLFFDLYQILPNGLASYSISCLVQITSVRRSLFNNSERTKFL
THLVEGVKDILTTLHGLSDPDNYHEFCRLLARLKSNYQLGELIAVPCYPE
AIQLIAKFTVESLHLWLFAPNSVHYLLTLWQRMVASVPYVKSPDPHLLGT
YTPEVIKAYIESRLDAVPVIIRDNLDDPLDDFCMVQQQLEQLSVIERCEY
NKTCNLLVQHFDQKAREYENLLQTPNANSIDITIHELQLTWLVYIIGSAI
VGRLTVATSDEHDTMDAELVIRVLQLMTLTDARLPQAGCEKLELAILSFL
DQVRKMHSSEQAQKANLNKRLSEVFGLTDEQMLLSFINRKIITNLKFWGR
SESIITKTLMLLSELSVHFNSVRKLARLEEVQFMLTHHTSEHFPFLGTNS
SLSEMRCRTMFYTSLGRLLMFDLGEDEERFYNFLEPLTNQFESLGSVMMD
NNIFSNEEAKKVIIGLARDLRGLALPLNARIQYTMLFEWLYYADYLPILL
RAMDLWAHDPAVTTPILKLFAELVHCRTQRLAGNVSSPMGILLFREASKL
ICIYGNRILHQEVPRERLYPMRLKGIAICFLILKNSLGGNYVNCGVFKLY
GDDTLDSVLNIIAKLILTIEQRDLIEYPKLSTAYYNLLNCLSQDHVSYLA
ALEPAAFVYILKSLTKGLAALDSATYISCCTILDSIVSYIFKQLQMKVST
FPNKKLRSLNQENVQFLKVVEMNSELLQSMMSSLLNNVLQEDCRNQWSMS
RPLLVLILLYEDYYRSLKDRIICAQPIEKQQTMAQWFDDLMVGIERNVSS
KNKEKFTQNMSTFRRDVVNLPKSTAAFSCDRPMCDGGFEPSEPESSPH*
BS15486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp16-PH | 1098 | CG33180-PH | 1..1098 | 1..1098 | 5602 | 100 | Plus |
| Ranbp16-PB | 1098 | CG33180-PB | 1..1098 | 1..1098 | 5602 | 100 | Plus |
| Ranbp16-PE | 1080 | CG33180-PE | 1..1076 | 1..1076 | 5471 | 100 | Plus |
| Ranbp16-PF | 1110 | CG33180-PF | 1..1075 | 1..1075 | 5467 | 100 | Plus |
| Ranbp16-PC | 1077 | CG33180-PC | 1..1075 | 1..1075 | 5467 | 100 | Plus |
