Clone Sequence Records
BS15491.complete Sequence
854 bp assembled on 2010-02-09
GenBank Submission: KX801726
> BS15491.complete
GAAGTTATCAGTCGACATGGTGCTAATCAAGGAGTATCGCGTATGCATGC
CGCTTACGGTGGAGGAGTACAAGATCGGACAGCTTTATATGATAGCGCGC
CACAGTCTGGAGCAATCGGAGGAGGGCGAGGGCGTTGAGGTGGTGGAGAA
CAAGCCCTGCGAGGATCCCGTTCACGGCAAGGGCCAGTACACGGAGAAGC
ACATTCACTTGTCCAGCCGACTGCCCTACTGGATCCAGGCCATTTGCCCC
CGAGTCTTCTATGTGATAGAGAAATCATGGAACTACTATCCGTACACGCT
AACAGAATACACGTGTTCCTTTATACCCAAACTAAATGTGCTCATCAAAA
CTAAGTACGAGGACAATAATGGCAGCACAGAAAACTGTCTGGATCTTACT
GAAGATGAGCTCAAAGTTCGAACTGTGGATCATTTGGACATAGCGTTCGA
TGAGGTCAGTGCCAAGCATTATAAGAAGGAAGAAGATCCCAAGTTCTTCA
AATCCGAAAAGACAAACCGTGGTCCATTGATTGAAGGATGGCGGGAAACG
GACAAGCCCATTATGTGCTCCTACAAGGTGGTCCACGCCAGCTTTGAGGT
ATGGGGTCTGCAGACCAAAGTGGAGGACTTCATTCAGCGCGGAATTCGGG
AGATTCTACTACTGGGACACCGGCAGGCTTTCGCATGGGTGGACGAATGG
CATGGCATGACCCTGGAGGATGTTCGCGCCTACGAGCGTCAAAAGCAGGC
CGAGACCAATGAGAAGATTCACAACACAAGTGGTGGCGCAAATGCAGCGG
CCAACGCCAAAGAGGCAAATGATGGCGATATTGATTGAAAGCTTTCTAGA
CCAT
BS15491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 822 | CG17818-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 1382 | CG17818-RA | 109..930 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17696228..17696550 | 838..516 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 17697985..17698135 | 216..66 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 17696612..17696741 | 515..386 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 17697832..17697923 | 305..214 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 17696801..17696873 | 385..313 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 17698204..17698254 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:21:51 has no hits.
BS15491.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:16 Download gff for
BS15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:26 Download gff for
BS15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 108..928 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:38 Download gff for
BS15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 109..929 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:57 Download gff for
BS15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 108..928 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:43 Download gff for
BS15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 109..929 | 17..837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:43 Download gff for
BS15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17697985..17698133 | 68..216 | 100 | <- | Minus |
| 2R | 17698204..17698254 | 17..67 | 100 | | Minus |
| 2R | 17696229..17696550 | 516..837 | 100 | <- | Minus |
| 2R | 17696612..17696741 | 386..515 | 100 | <- | Minus |
| 2R | 17696801..17696872 | 314..385 | 100 | <- | Minus |
| 2R | 17697825..17697920 | 217..313 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:38 Download gff for
BS15491.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13584117..13584246 | 386..515 | 100 | <- | Minus |
| arm_2R | 13584306..13584377 | 314..385 | 100 | <- | Minus |
| arm_2R | 13585330..13585425 | 217..313 | 93 | <- | Minus |
| arm_2R | 13585490..13585638 | 68..216 | 100 | <- | Minus |
| arm_2R | 13585709..13585759 | 17..67 | 100 | | Minus |
| arm_2R | 13583734..13584055 | 516..837 | 100 | <- | Minus |
BS15491.3prime Sequence
874 bp (837 high quality bases) assembled on 2006-12-21
> BS15491.3prime
TCCCTTAAAGGCGCGCGCCAAACGAATGGTCTAGAAAGCTTTCCCTCAAT
ATCGCCATCATTTGCCTCTTTGGCGTTGGCCGCTGCATTTGCGCCACCAC
TTGTGTTGTGAATCTTCTCATTGGTCTCGGCCTGCTTTTGACGCTCGTAG
GCGCGAACATCCTCCAGGGTCATGCCATGCCATTCGTCCACCCATGCGAA
AGCCTGCCGGTGTCCCAGTAGTAGAATCTCCCGAATTCCGCGCTGAATGA
AGTCCTCCACTTTGGTCTGCAGACCCCATACCTCAAAGCTGGCGTGGACC
ACCTTGTAGGAGCACATAATGGGCTTGTCCGTTTCCCGCCATCCTTCAAT
CAATGGACCACGGTTTGTCTTTTCGGATTTGAAGAACTTGGGATCTTCTT
CCTTCTTATAATGCTTGGCACTGACCTCATCGAACGCTATGTCCAAATGA
TCCACAGTTCGAACTTTGAGCTCATCTTCAGTAAGATCCAGACAGTTTTC
TGTGCTGCCATTATTGTCCTCGTACTTAGTTTTGATGAGCACATTTAGTT
TGGGTATAAAGGAACACGTGTATTCTGTTAGCGTGTACGGATAGTAGTTC
CATGATTTCTCTATCACATAGAAGACTCGGGGGCAAATGGCCTGGATCCA
GTAGGGCAGTCGGCTGGACAAGTGAATGTGCTTCTCCGTGTACTGGCCCT
TGCCGTGAACGGGATCCTCGCAGGGCTTGTTCTCCACCACCTCAACGCCC
TCGCCCTCCTCCGATTGCTCCAGACTGTGGCGCGCTATCATATAAAGCTG
TCCGATCTTGTACTCCTCCACCGTAAGCGGCATGCATACGCGATACTCCT
TGATTAGCACCATGTCGACTGATA
BS15491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17818-PA | 822 | rdgBbeta-RA | 1..818 | 863..46 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 1382 | CG17818-RA | 109..926 | 863..46 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17696232..17696550 | 46..364 | 1595 | 100 | Plus |
| 2R | 25286936 | 2R | 17697985..17698135 | 664..814 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 17696612..17696741 | 365..494 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 17697832..17697923 | 575..666 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 17696801..17696873 | 495..567 | 365 | 100 | Plus |
| 2R | 25286936 | 2R | 17698204..17698254 | 813..863 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:35:15 has no hits.
BS15491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:19 Download gff for
BS15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17818-PA | 1..822 | 42..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:41 Download gff for
BS15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17818-PA | 1..822 | 42..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:25:49 Download gff for
BS15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 102..930 | 42..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:23:38 Download gff for
BS15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 102..930 | 42..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:23:38 Download gff for
BS15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17696226..17696550 | 40..364 | 99 | <- | Plus |
| 2R | 17696612..17696741 | 365..494 | 100 | <- | Plus |
| 2R | 17696801..17696872 | 495..566 | 100 | <- | Plus |
| 2R | 17697825..17697920 | 567..663 | 93 | <- | Plus |
| 2R | 17697985..17698133 | 664..812 | 100 | <- | Plus |
| 2R | 17698204..17698261 | 813..871 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:25:49 Download gff for
BS15491.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13585709..13585766 | 813..871 | 93 | | Plus |
| arm_2R | 13584306..13584377 | 495..566 | 100 | <- | Plus |
| arm_2R | 13585330..13585425 | 567..663 | 93 | <- | Plus |
| arm_2R | 13585490..13585638 | 664..812 | 100 | <- | Plus |
| arm_2R | 13583731..13584055 | 40..364 | 99 | <- | Plus |
| arm_2R | 13584117..13584246 | 365..494 | 100 | <- | Plus |
BS15491.5prime Sequence
852 bp (804 high quality bases) assembled on 2006-12-21
> BS15491.5prime
GAAGTTATCCTTCGACATGGTGCTAATCAAGGAGTATCGCGTATGCATGC
CGCTTACGGTGGAGGAGTACAAGATCGGACAGCTTTATATGATAGCGCGC
CACAGTCTGGAGCAATCGGAGGAGGGCGAGGGCGTTGAGGTGGTGGAGAA
CAAGCCCTGCGAGGATCCCGTTCACGGCAAGGGCCAGTACACGGAGAAGC
ACATTCACTTGTCCAGCCGACTGCCCTACTGGATCCAGGCCATTTGCCCC
CGAGTCTTCTATGTGATAGAGAAATCATGGAACTACTATCCGTACACGCT
AACAGAATACACGTGTTCCTTTATACCCAAACTAAATGTGCTCATCAAAA
CTAAGTACGAGGACAATAATGGCAGCACAGAAAACTGTCTGGATCTTACT
GAAGATGAGCTCAAAGTTCGAACTGTGGATCATTTGGACATAGCGTTCGA
TGAGGTCAGTGCCAAGCATTATAAGAAGGAAGAAGATCCCAAGTTCTTCA
AATCCGAAAAGACAAACCGTGGTCCATTGATTGAAGGATGGCGGGAAACG
GACAAGCCCATTATGTGCTCCTACAAGGTGGTCCACGCCAGCTTTGAGGT
ATGGGGTCTGCAGACCAAAGTGGAGGACTTCATTCAGCGCGGAATTCGGG
AGATTCTACTACTGGGACACCGGCAGGCTTTCGCATGGGTGGACGAATGG
CATGGCATGACCCTGGAGGATGTTCGCGCCTACGAGCGTCAAAAGCAGGC
CGAGACCAATGAGAAGATTCACAACACAAGTGGTGGCGCAGATGCAGCGG
GCCACGCCAAAGAGGCAAATGATGGCGATATTGATTGAAAGCTTTCTAGA
CC
BS15491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17818-PA | 822 | rdgBbeta-RA | 1..822 | 17..838 | 4035 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 1382 | CG17818-RA | 109..930 | 17..838 | 4065 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17696228..17696550 | 838..516 | 1570 | 99.1 | Minus |
| 2R | 25286936 | 2R | 17697985..17698135 | 216..66 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 17696612..17696741 | 515..386 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 17697832..17697923 | 305..214 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 17696801..17696873 | 385..313 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 17698204..17698254 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:39:04 has no hits.
BS15491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:20 Download gff for
BS15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17818-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:43 Download gff for
BS15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17818-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:51:50 Download gff for
BS15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 101..936 | 9..845 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:09:00 Download gff for
BS15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 101..936 | 9..845 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:09:00 Download gff for
BS15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17696222..17696550 | 516..845 | 98 | <- | Minus |
| 2R | 17696612..17696741 | 386..515 | 100 | <- | Minus |
| 2R | 17696801..17696872 | 314..385 | 100 | <- | Minus |
| 2R | 17697825..17697920 | 217..313 | 93 | <- | Minus |
| 2R | 17697985..17698133 | 68..216 | 100 | <- | Minus |
| 2R | 17698204..17698262 | 9..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:51:50 Download gff for
BS15491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13585709..13585767 | 9..67 | 93 | | Minus |
| arm_2R | 13583727..13584055 | 516..845 | 98 | <- | Minus |
| arm_2R | 13584117..13584246 | 386..515 | 100 | <- | Minus |
| arm_2R | 13584306..13584377 | 314..385 | 100 | <- | Minus |
| arm_2R | 13585330..13585425 | 217..313 | 93 | <- | Minus |
| arm_2R | 13585490..13585638 | 68..216 | 100 | <- | Minus |
BS15491.pep Sequence
Translation from 16 to 837
> BS15491.pep
MVLIKEYRVCMPLTVEEYKIGQLYMIARHSLEQSEEGEGVEVVENKPCED
PVHGKGQYTEKHIHLSSRLPYWIQAICPRVFYVIEKSWNYYPYTLTEYTC
SFIPKLNVLIKTKYEDNNGSTENCLDLTEDELKVRTVDHLDIAFDEVSAK
HYKKEEDPKFFKSEKTNRGPLIEGWRETDKPIMCSYKVVHASFEVWGLQT
KVEDFIQRGIREILLLGHRQAFAWVDEWHGMTLEDVRAYERQKQAETNEK
IHNTSGGANAAANAKEANDGDID*
BS15491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-PA | 273 | CG17818-PA | 1..273 | 1..273 | 1471 | 100 | Plus |
| rdgB-PG | 1237 | CG11111-PG | 1..267 | 2..251 | 607 | 45.7 | Plus |
| rdgB-PE | 1241 | CG11111-PE | 1..267 | 2..251 | 607 | 45.7 | Plus |
| rdgB-PF | 1250 | CG11111-PF | 1..267 | 2..251 | 607 | 45.7 | Plus |
| rdgB-PB | 1250 | CG11111-PB | 1..267 | 2..251 | 607 | 45.7 | Plus |
