Clone Sequence Records
BS15495.3prime Sequence
734 bp (733 high quality bases) assembled on 2006-12-21
> BS15495.3prime
ATGGTCTAGAAAGCTTTTACTTTTTCTTGTTTTTATTGTTAGCTCCGCGT
GGCGGTGTCAAAGGACGTCCTGAGCTGCCAAAGTTGGGATAAACAAATCG
TCGCTTGTCGGCGGGTTTCAATATCTGGAAGGAGCACATCAATGTGTCGT
CCACGGACATCATGGCACCCGCGTTGTCGAATTCCCCGCAGTAGTTGGGC
GCCGAGAAGAGCGTCACCAGCTGACGTTTGGCGAAGAACTCATAACCGTC
CTCCACTACCTGATGAGCCCGACAGATCAGGTCAAATTCGTGCTTCTGTA
AAAATTTACCCACAACCTCTGCTCCAAATGTGAAGCTCACGCCGCGATCA
TTCTCGCCCCAGCCCATGGTATCCTTATCCGGATCCGACCACAGCAGATC
GCACAGCAGTCCCTGATCGGGCACGTCTGTGGGACGCATGATGCGTCGTA
TCTGCTCCATGGACGACAGATCTGGACTCAGGCCACCGTGGCAGCAGAAG
ATCTTCTCATCCACGATGGCGGCCACCGGCAGGCAGTTGAAGCAGTCCGT
GAAAGTTTTCCACAGCTTGATGGTGTAGCGACGTTTACATTCGTCATAGA
ACCCGTAGATGCGATTGATGCTGGCGCACTCATGGTTGCCGCGCAGCAAG
AAGAAGTTCTCCGCGTACTTGATCTTGTAGGCCAGCAGCAGGCATATCGT
CTCCAGGGATTGCTTGCCGCGATCGACATAGTCG
BS15495.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6593-PA | 984 | Pp1alpha-96A-RA | 267..980 | 734..21 | 3570 | 100 | Minus |
| CG5650-PA | 909 | Pp1-87B-RA | 267..518 | 734..483 | 635 | 90 | Minus |
| CG5650-PA | 909 | Pp1-87B-RA | 538..671 | 463..330 | 295 | 88.8 | Minus |
| CG2096-PB | 993 | flw-RB | 270..383 | 734..621 | 295 | 90.3 | Minus |
| CG2096-PA | 1386 | flw-RA | 663..776 | 734..621 | 295 | 90.3 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 283..383 | 718..618 | 205 | 88.1 | Minus |
| CG5650-PA | 909 | Pp1-87B-RA | 793..875 | 208..126 | 190 | 89.1 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 802..852 | 199..149 | 155 | 92.1 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 541..650 | 460..351 | 150 | 85.4 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 481..533 | 520..468 | 140 | 90.5 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 427..473 | 574..528 | 135 | 91.4 | Minus |
| CG2096-PB | 993 | flw-RB | 643..674 | 361..330 | 135 | 96.8 | Minus |
| CG2096-PA | 1386 | flw-RA | 1036..1067 | 361..330 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 656..1374 | 734..16 | 3580 | 99.9 | Minus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 656..1374 | 734..16 | 3580 | 99.9 | Minus |
| Pp1-87B-RA | 2203 | CG5650-RA | 496..1128 | 734..102 | 1815 | 86 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424790..12425422 | 102..734 | 1815 | 85.8 | Plus |
| 3R | 32079331 | 3R | 24519595..24519883 | 603..315 | 1445 | 100 | Minus |
| X | 23542271 | X | 15359439..15360055 | 102..718 | 1405 | 81.8 | Plus |
| 3R | 32079331 | 3R | 24519938..24520089 | 318..167 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 24520342..24520495 | 169..16 | 755 | 99.4 | Minus |
| 3R | 32079331 | 3R | 24519061..24519194 | 734..601 | 670 | 100 | Minus |
| X | 23542271 | X | 10406764..10407035 | 601..330 | 535 | 79.8 | Minus |
| 2R | 25286936 | 2R | 21881560..21882040 | 157..637 | 425 | 72.6 | Plus |
| X | 23542271 | X | 10406570..10406701 | 734..603 | 420 | 87.9 | Minus |
| X | 23542271 | X | 10407156..10407300 | 269..125 | 305 | 80.7 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:34:55 has no hits.
BS15495.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:24 Download gff for
BS15495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6593-PA | 267..963 | 38..734 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:49 Download gff for
BS15495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6593-PA | 267..963 | 38..734 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:51:02 Download gff for
BS15495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 656..1378 | 12..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:08:23 Download gff for
BS15495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 656..1378 | 12..734 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed on 2015-01-30 19:08:23 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 15:51:02 has no hits.
BS15495.5prime Sequence
696 bp (508 high quality bases) assembled on 2006-12-21
> BS15495.5prime
GAAGTTATCCTTCGACATGTCGGATATCATGAACATCGACAGTATCATCT
CGCGCCTGCTGGAGGTGCGCGGTGCACGACCGGGAAAGAATGTTCAGCTA
TCAGAGAGCGAGATCCGCAGCCTGTGCCTCAAGTCCCGCGAGATATTCCT
GTCGCAGCCCATACTCCTGGAGCTGGAGGCACCGCTGAAGATCTGCGGCG
ACATACACGGACAATATTATGACCTCTTGCGCCTGTTCGAATACGGCGGC
TTTCCGCCCGAGTCAAACTACCTGTTCCTGGGCGACTATGTCGATCGCGG
CAAGCAATCCCTGGAGACGATATGCCTGCTGCTGGCCTACAAGATCAAGT
ACGCGGAGAACTTCTTCTTGCTGCGCGGCAACCATGAGTGCGCCAGCATC
AATCGCATCTACGGGTTCTATGACGAATGTAAACGTCGCTACACCATCAA
GCTGTGGAAAACTTTCACGGACTGCTTCAACTGCCTGCCGGTGGCCGCCA
TCGTGGATGAGAAGATCTTCTGCTGCCACGGTGGCCTGAGTCCAGATCTG
TCGTCCATGGAGCAGATACGACGCATCATGCGTCCCACAGACGTGCCCGA
TCAGGGACTGCTGTGCGATCTGCTGTGGTCGGATCCGGATAANGATACAA
TGGGCTGGGGCGAGAATGAATCGCGCGTGAGCTTCACATTTGGAGC
BS15495.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6593-PA | 984 | Pp1alpha-96A-RA | 1..653 | 17..669 | 3221 | 99.6 | Plus |
| CG5650-PA | 909 | Pp1-87B-RA | 211..518 | 227..534 | 740 | 89.6 | Plus |
| CG2096-PB | 993 | flw-RB | 253..383 | 266..396 | 330 | 90 | Plus |
| CG2096-PA | 1386 | flw-RA | 646..776 | 266..396 | 330 | 90 | Plus |
| CG5650-PA | 909 | Pp1-87B-RA | 538..647 | 554..663 | 231 | 88.1 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 283..383 | 299..399 | 205 | 88.1 | Plus |
| CG5650-PA | 909 | Pp1-87B-RA | 115..188 | 131..204 | 195 | 90.5 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 481..533 | 497..549 | 140 | 90.5 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 139..185 | 155..201 | 135 | 91.4 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 427..473 | 443..489 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 390..1069 | 17..696 | 3329 | 99.4 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 390..1069 | 17..696 | 3329 | 99.4 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 242..900 | 29..687 | 1859 | 85.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12425042..12425676 | 663..29 | 1844 | 86 | Minus |
| 3R | 32079331 | 3R | 24518843..24519194 | 65..416 | 1760 | 100 | Plus |
| X | 23542271 | X | 15359688..15360298 | 666..56 | 1454 | 82.5 | Minus |
| 3R | 32079331 | 3R | 24519595..24519877 | 414..696 | 1314 | 97.5 | Plus |
| X | 23542271 | X | 10406407..10406701 | 120..414 | 755 | 83.7 | Plus |
| X | 23542271 | X | 10406764..10407017 | 416..669 | 449 | 78.3 | Plus |
| 2R | 25286936 | 2R | 17955967..17956265 | 544..246 | 370 | 74.9 | Minus |
| 3R | 32079331 | 3R | 24518659..24518707 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:59:15 has no hits.
BS15495.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:25 Download gff for
BS15495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6593-PA | 1..680 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:51 Download gff for
BS15495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6593-PA | 1..680 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:37:43 Download gff for
BS15495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1069 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:16:24 Download gff for
BS15495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1069 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-11 02:16:24 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-21 16:37:43 has no hits.
BS15495.complete Sequence
1016 bp assembled on 2008-08-14
GenBank Submission: KX804433
> BS15495.complete
GAAGTTATCAGTCGACATGTCGGATATCATGAACATCGACAGTATCATCT
CGCGCCTGCTGGAGGTGCGCGGTGCACGACCGGGAAAGAATGTTCAGCTA
TCAGAGAGCGAGATCCGCAGCCTGTGCCTCAAGTCCCGCGAGATATTCCT
GTCGCAGCCCATACTCCTGGAGCTGGAGGCACCGCTGAAGATCTGCGGCG
ACATACACGGACAATATTATGACCTCTTGCGCCTGTTCGAATACGGCGGC
TTTCCGCCCGAGTCAAACTACCTGTTCCTGGGCGACTATGTCGATCGCGG
CAAGCAATCCCTGGAGACGATATGCCTGCTGCTGGCCTACAAGATCAAGT
ACGCGGAGAACTTCTTCTTGCTGCGCGGCAACCATGAGTGCGCCAGCATC
AATCGCATCTACGGGTTCTATGACGAATGTAAACGTCGCTACACCATCAA
GCTGTGGAAAACTTTCACGGACTGCTTCAACTGCCTGCCGGTGGCCGCCA
TCGTGGATGAGAAGATCTTCTGCTGCCACGGTGGCCTGAGTCCAGATCTG
TCGTCCATGGAGCAGATACGACGCATCATGCGTCCCACAGACGTGCCCGA
TCAGGGACTGCTGTGCGATCTGCTGTGGTCGGATCCGGATAAGGATACCA
TGGGCTGGGGCGAGAATGATCGCGGCGTGAGCTTCACATTTGGAGCAGAG
GTTGTGGGTAAATTTTTACAGAAGCACGAATTTGACCTGATCTGTCGGGC
TCATCAGGTAGTGGAGGACGGTTATGAGTTCTTCGCCAAACGTCAGCTGG
TGACGCTCTTCTCGGCGCCCAACTACTGCGGGGAATTCGACAACGCGGGT
GCCATGATGTCCGTGGACGACACATTGATGTGCTCCTTCCAGATATTGAA
ACCCGCCGACAAGCGACGATTTGTTTATCCCAACTTTGGCAGCTCAGGAC
GTCCTTTGACACCGCCACGCGGAGCTAACAATAAAAACAAGAAAAAATAA
AAGCTTTCTAGACCAT
BS15495.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 984 | CG6593-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| Pp1alpha-96A-RA | 984 | CG6593-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
| Pp1-87B-RA | 909 | CG5650-PA | 13..899 | 29..915 | 2410 | 84.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 390..1374 | 17..1001 | 4925 | 100 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 390..1374 | 17..1001 | 4925 | 100 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 242..1128 | 29..915 | 2410 | 84.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424790..12425676 | 915..29 | 2410 | 84.8 | Minus |
| X | 23542271 | X | 15359439..15360298 | 915..56 | 1915 | 81.5 | Minus |
| 3R | 32079331 | 3R | 24518843..24519194 | 65..416 | 1760 | 100 | Plus |
| 3R | 32079331 | 3R | 24519595..24519883 | 414..702 | 1445 | 100 | Plus |
| 3R | 32079331 | 3R | 24520342..24520495 | 848..1001 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 24519938..24520089 | 699..850 | 760 | 100 | Plus |
| X | 23542271 | X | 10406407..10406701 | 120..414 | 755 | 83.7 | Plus |
| X | 23542271 | X | 10406764..10407035 | 416..687 | 535 | 79.8 | Plus |
| Y | 3667352 | Y | 3539716..3540455 | 889..150 | 430 | 70.5 | Minus |
| 2R | 25286936 | 2R | 21881560..21882040 | 860..380 | 425 | 72.6 | Minus |
| 2R | 25286936 | 2R | 17955967..17956265 | 544..246 | 370 | 74.9 | Minus |
| X | 23542271 | X | 10407156..10407300 | 748..892 | 305 | 80.7 | Plus |
| 3R | 32079331 | 3R | 24518659..24518707 | 17..65 | 245 | 100 | Plus |
| Y | 3667352 | Y | 10568..10706 | 731..869 | 185 | 75.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:27:51 has no hits.
BS15495.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:57 Download gff for
BS15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 403..1362 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:45 Download gff for
BS15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1349 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:15 Download gff for
BS15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 403..1362 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:11 Download gff for
BS15495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1349 | 17..976 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 08:11:11 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 05:15:45 has no hits.
BS15495.pep Sequence
Translation from 16 to 999
> BS15495.pep
MSDIMNIDSIISRLLEVRGARPGKNVQLSESEIRSLCLKSREIFLSQPIL
LELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLE
TICLLLAYKIKYAENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTF
TDCFNCLPVAAIVDEKIFCCHGGLSPDLSSMEQIRRIMRPTDVPDQGLLC
DLLWSDPDKDTMGWGENDRGVSFTFGAEVVGKFLQKHEFDLICRAHQVVE
DGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPADKR
RFVYPNFGSSGRPLTPPRGANNKNKKK*
BS15495.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-PB | 327 | CG6593-PB | 1..327 | 1..327 | 1754 | 100 | Plus |
| Pp1alpha-96A-PA | 327 | CG6593-PA | 1..327 | 1..327 | 1754 | 100 | Plus |
| Pp1-87B-PA | 302 | CG5650-PA | 1..301 | 1..301 | 1573 | 96.7 | Plus |
| Pp1-13C-PA | 302 | CG9156-PA | 1..301 | 1..301 | 1522 | 92.4 | Plus |
| flw-PC | 330 | CG2096-PC | 6..330 | 5..327 | 1451 | 82.2 | Plus |
