Clone Sequence Records
BS15501.3prime Sequence
346 bp (346 high quality bases) assembled on 2006-12-21
> BS15501.3prime
TCCCATAAAGGGGCGCGCCAAANGAATGGNCTAGAAAGCTTCTACCCTCA
GAGATTCGCGATGGCCTGAGCCGCATTAGCGGCTGCCACCTGTGGAGCGT
CCTCTGCCGGAATGCGTTTGCTTCGGAATAGAATCACATGCGGCTCCGGC
GCGTGGACCATGTAGTGCACCCAGCCGGGGCTCTGCTGCACGCCCAGGTT
GCGCCACTCCGTCTCGGTCATCAGATGAGCCTTCGGCACATGTTTGGCCA
AATCCGGTGGCAAGATAACATGCCTGTATTCAAAGTTGTCGTCGAAGTAC
TTCTCTGAGTATTGAATTTGATCGGCCGGCATGTCGACTGATAACT
BS15501.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9790-PA | 291 | Cks85A-RA | 1..284 | 332..49 | 1395 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 83..373 | 332..42 | 1410 | 99 | Minus |
| Cks85A-RB | 666 | CG9790-RB | 139..429 | 332..42 | 1410 | 99 | Minus |
| Cks85A-RA | 610 | CG9790-RA | 83..373 | 332..42 | 1410 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8715437..8715671 | 42..276 | 1130 | 98.7 | Plus |
| 3R | 32079331 | 3R | 8715738..8715797 | 273..332 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 21:39:20 has no hits.
BS15501.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:26 Download gff for
BS15501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9790-PA | 1..291 | 42..332 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:52 Download gff for
BS15501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9790-PA | 1..291 | 42..332 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:22:14 Download gff for
BS15501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 78..375 | 38..341 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:23:52 Download gff for
BS15501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 78..375 | 38..341 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:23:52 Download gff for
BS15501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8715435..8715668 | 38..273 | 97 | <- | Plus |
| 3R | 8715739..8715802 | 274..341 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:22:14 Download gff for
BS15501.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4541157..4541390 | 38..273 | 97 | <- | Plus |
| arm_3R | 4541461..4541524 | 274..341 | 94 | | Plus |
BS15501.5prime Sequence
321 bp (321 high quality bases) assembled on 2006-12-21
> BS15501.5prime
GAAGTTATCCTTCGACATGCCGGCCGATCAAATTCAATACTCAGAGAAGT
ACTTCGACGACAACTTTGAATACAGGCATGTTATCTTGCCACCGGATTTG
GCCAAACATGTGCCGAAGGCTCATCTGATGACCGAGACGGAGTGGCGCAA
CCTGGGCGTGCAGCAGAGCCCCGGCTGGGTGCACTACATGGTCCACGCGC
CGGAGCCGCATGTGATTCTATTCCGACGCAAACGCATTCCGGCAGAGGAC
GCTCCACAGGTGGCAGCCGCTAATGCGGCTCAGGCCATCGCGAATCTCTG
CGGTTAGAAGCTTTCTAGACC
BS15501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9790-PA | 291 | Cks85A-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 83..373 | 17..307 | 1455 | 100 | Plus |
| Cks85A-RB | 666 | CG9790-RB | 139..429 | 17..307 | 1455 | 100 | Plus |
| Cks85A-RA | 610 | CG9790-RA | 83..373 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8715437..8715671 | 307..73 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 8715738..8715797 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 14:56:51 has no hits.
BS15501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:27 Download gff for
BS15501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9790-PA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:54 Download gff for
BS15501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9790-PA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:21:45 Download gff for
BS15501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 77..375 | 11..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:18 Download gff for
BS15501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 77..375 | 11..311 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:18 Download gff for
BS15501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8715435..8715668 | 76..311 | 99 | <- | Minus |
| 3R | 8715739..8715803 | 11..75 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:21:45 Download gff for
BS15501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4541157..4541390 | 76..311 | 99 | <- | Minus |
| arm_3R | 4541461..4541525 | 11..75 | 96 | | Minus |
BS15501.complete Sequence
323 bp assembled on 2006-11-29
GenBank Submission: FJ637936
> BS15501.complete
GAAGTTATCAGTCGACATGCCGGCCGATCAAATTCAATACTCAGAGAAGT
ACTTCGACGACAACTTTGAATACAGGCATGTTATCTTGCCACCGGATTTG
GCCAAACATGTGCCGAAGGCTCATCTGATGACCGAGACGGAGTGGCGCAA
CCTGGGCGTGCAGCAGAGCCCCGGCTGGGTGCACTACATGGTCCACGCGC
CGGAGCCGCATGTGATTCTATTCCGACGCAAACGCATTCCGGCAGAGGAC
GCTCCACAGGTGGCAGCCGCTAATGCGGCTCAGGCCATCGCGAATCTCTG
CGGTTAGAAGCTTTCTAGACCAT
BS15501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 291 | CG9790-PC | 1..291 | 17..307 | 1455 | 100 | Plus |
| Cks85A-RB | 291 | CG9790-PB | 1..291 | 17..307 | 1455 | 100 | Plus |
| Cks85A-RA | 291 | CG9790-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 83..373 | 17..307 | 1455 | 100 | Plus |
| Cks85A-RB | 666 | CG9790-RB | 139..429 | 17..307 | 1455 | 100 | Plus |
| Cks85A-RA | 610 | CG9790-RA | 83..373 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8715437..8715671 | 307..73 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 8715738..8715797 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:03 has no hits.
BS15501.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:29 Download gff for
BS15501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:57 Download gff for
BS15501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 55..352 | 8..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:43 Download gff for
BS15501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 83..373 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:29 Download gff for
BS15501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 55..352 | 8..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:08 Download gff for
BS15501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 83..373 | 17..307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:08 Download gff for
BS15501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8715437..8715668 | 76..307 | 100 | <- | Minus |
| 3R | 8715739..8715797 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:43 Download gff for
BS15501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4541159..4541390 | 76..307 | 100 | <- | Minus |
| arm_3R | 4541461..4541519 | 17..75 | 100 | | Minus |
BS15501.pep Sequence
Translation from 16 to 306
> BS15501.pep
MPADQIQYSEKYFDDNFEYRHVILPPDLAKHVPKAHLMTETEWRNLGVQQ
SPGWVHYMVHAPEPHVILFRRKRIPAEDAPQVAAANAAQAIANLCG*
BS15501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-PC | 96 | CG9790-PC | 1..96 | 1..96 | 522 | 100 | Plus |
| Cks85A-PB | 96 | CG9790-PB | 1..96 | 1..96 | 522 | 100 | Plus |
| Cks85A-PA | 96 | CG9790-PA | 1..96 | 1..96 | 522 | 100 | Plus |
| Cks30A-PA | 74 | CG3738-PA | 5..72 | 6..73 | 288 | 67.6 | Plus |
