Clone Sequence Records
BS15502.3prime Sequence
417 bp (417 high quality bases) assembled on 2006-12-21
> BS15502.3prime
ATGGTCTAGAAAGCTTCTACCCTCCGCGCTCCTTGGATTGGGTGGCGTGC
GTCAGGATCCACGACTTGTAGTCGCGCTTCTTCATCGACATCTGCTTGTG
GCGTGGATGCGTGGGGCAGATGACATAACCGCGCTCCTGGCGCACCACGA
TGTAGCAGTCCTTGCAGCGTCGCTTCAGGCGTCCCTTGACCTTGAATCCC
GCCACCTGCTGGACCAAAGTGGAGCCAGGCGTCAGCAGACCCGACGTCTG
ACAGATTCCAGTTGTGGCGGCCACAAGTTGCGAGCTTTGAATTGATACAA
TTGCAGGAGCCGCCGGCCGGGTGAGAAGGTGGAAACCACGCGCGGCACTG
AGACCATTCCACAAGCGGGAACCTTGTTGCAGTATTCTACTAGCCAGGGA
CATGTCGACTGATAACT
BS15502.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18767-PA | 387 | mRpL36-RA | 1..380 | 403..24 | 1900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL36-RA | 495 | CG18767-RA | 41..420 | 403..24 | 1900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8124659..8125038 | 24..403 | 1900 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:56:17 has no hits.
BS15502.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:29 Download gff for
BS15502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18767-PA | 1..387 | 17..403 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:56 Download gff for
BS15502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18767-PA | 1..387 | 17..403 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:55:04 Download gff for
BS15502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 41..428 | 16..403 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:49 Download gff for
BS15502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 41..428 | 16..403 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:49 Download gff for
BS15502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8124651..8125042 | 16..408 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:55:04 Download gff for
BS15502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8117751..8118142 | 16..408 | 98 | | Plus |
BS15502.5prime Sequence
417 bp (417 high quality bases) assembled on 2006-12-21
> BS15502.5prime
GAAGTTATCCTTCGACATGTCCCTGGCTAGTAGAATACTGCAACAAGGTT
CCCGCTTGTGGAATGGTCTCAGTGCCGCGCGTGGTTTCCACCTTCTCACC
CGGCCGGCGGCTCCTGCAATTGTATCAATTCAAAGCTCGCAACTTGTGGC
CGCCACAACTGGAATCTGTCAGACGTCGGGTCTGCTGACGCCTGGCTCCA
CTTTGGTCCAGCAGGTGGCGGGATTCAAGGTCAAGGGACGCCTGAAGCGA
CGCTGCAAGGACTGCTACATCGTGGTGCGCCAGGAGCGCGGTTATGTCAT
CTGCCCCACGCATCCACGCCACAAGCAGATGTCGATGAAGAAGCGCGACT
ACAAGTCGTGGATCCTGACGCACGCCACCCAATCCAAGGAGCGCGGCTAT
TAGAAGCTTTCTAGACC
BS15502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18767-PA | 387 | mRpL36-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL36-RA | 495 | CG18767-RA | 41..428 | 17..404 | 1940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8124651..8125038 | 404..17 | 1940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:21:35 has no hits.
BS15502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:30 Download gff for
BS15502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18767-PA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:05:58 Download gff for
BS15502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18767-PA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:46:18 Download gff for
BS15502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 41..431 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:28 Download gff for
BS15502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 41..431 | 17..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:28 Download gff for
BS15502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8124648..8125045 | 7..408 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:46:18 Download gff for
BS15502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8117748..8118145 | 7..408 | 98 | | Minus |
BS15502.complete Sequence
419 bp assembled on 2006-11-29
GenBank Submission: FJ637937
> BS15502.complete
GAAGTTATCAGTCGACATGTCCCTGGCTAGTAGAATACTGCAACAAGGTT
CCCGCTTGTGGAATGGTCTCAGTGCCGCGCGTGGTTTCCACCTTCTCACC
CGGCCGGCGGCTCCTGCAATTGTATCAATTCAAAGCTCGCAACTTGTGGC
CGCCACAACTGGAATCTGTCAGACGTCGGGTCTGCTGACGCCTGGCTCCA
CTTTGGTCCAGCAGGTGGCGGGATTCAAGGTCAAGGGACGCCTGAAGCGA
CGCTGCAAGGACTGCTACATCGTGGTGCGCCAGGAGCGCGGTTATGTCAT
CTGCCCCACGCATCCACGCCACAAGCAGATGTCGATGAAGAAGCGCGACT
ACAAGTCGTGGATCCTGACGCACGCCACCCAATCCAAGGAGCGCGGCTAT
TAGAAGCTTTCTAGACCAT
BS15502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL36-RA | 387 | CG18767-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL36-RA | 495 | CG18767-RA | 41..428 | 17..404 | 1940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8124651..8125038 | 404..17 | 1940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:54:56 has no hits.
BS15502.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:30 Download gff for
BS15502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 1..387 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:59 Download gff for
BS15502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 22..412 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:20 Download gff for
BS15502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 41..427 | 17..403 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:31 Download gff for
BS15502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 22..412 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:46 Download gff for
BS15502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL36-RA | 41..427 | 17..403 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:46 Download gff for
BS15502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8124652..8125038 | 17..403 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:20 Download gff for
BS15502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8117752..8118138 | 17..403 | 100 | | Minus |
BS15502.pep Sequence
Translation from 16 to 402
> BS15502.pep
MSLASRILQQGSRLWNGLSAARGFHLLTRPAAPAIVSIQSSQLVAATTGI
CQTSGLLTPGSTLVQQVAGFKVKGRLKRRCKDCYIVVRQERGYVICPTHP
RHKQMSMKKRDYKSWILTHATQSKERGY*
BS15502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL36-PA | 128 | CG18767-PA | 1..128 | 1..128 | 664 | 100 | Plus |
