Clone Sequence Records
BS15506.3prime Sequence
773 bp (767 high quality bases) assembled on 2006-12-21
> BS15506.3prime
ATGGTCTAGAAAGCTTTCACCCTTGTATCAGCACCCAGAAGCCCGTGGCG
TCATCCCGCCGGAAGTAGCGCGGCCGATTGTCCCTGAAAACGGTGACGGC
GGGGAACTGATTCTCCTGTATAAACCTAATGGTGGCACGCGTCTGAGGCG
CAAAGTGAGGCGGCTCCACGTCTGGACTGGAGGACAGGTGCTGCAACAGA
AACTCATCCGTTTGTGATAGCCACAGATCAGCGCCGCGCAAAGGATCGTA
GTTAAAGGGTCCAATGCGTAGCATGCCCAGCGAGGAGTCGTATATATCCA
GAACCGACTGCGCGCCCATGAAGATGCGAGCATCGCGTAGCTCCCGGTCG
GGTCCTCGGTCTGGAAAGGAGGCCGGAAAGATCTCACCAGTCTTGATGTT
CACGCCCACTCCATAGATGATGGGGCAGTTGATCTCGCCGCGCATCATGG
TATTTAGCTCGCCCACGCAAGCCTGCGTCAGATCGATTTCAAGTAGGTGA
TTGTGGAATGATTGCATAATGCTGAAGAATACGTCCTCGCCGTATCCCTT
GGCATCGCGATAGCCACCAATCAACTGCAACTCGATGCGACCCTCCGGAT
AGCCGACGGCCAGCTCCTGAACCCGCGACACCATGGTGCACACAGCCTCG
TCCACGCCGCTGCCATCGAAGTGCGCCAGGGCCACAGCACCAGATCCGGA
GTGCCGGACCACAACGATAATACAGGTGGTGGCATCGTCGGCACCGATGA
TGTTGACGTGCTTGTCGTGCGGG
BS15506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5473-PA | 933 | SP2637-RA | 177..928 | 773..22 | 3760 | 100 | Minus |
| CG5473-PB | 933 | SP2637-RB | 177..928 | 773..22 | 3760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-29 15:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP2637-RB | 1450 | CG5473-RB | 535..1286 | 773..22 | 3760 | 100 | Minus |
| SP2637-RA | 1340 | CG5473-RA | 425..1176 | 773..22 | 3760 | 100 | Minus |
| SP2637-RD | 1876 | CG5473-RD | 535..1279 | 773..29 | 3725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-29 15:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18641857..18642067 | 303..513 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 18642132..18642315 | 514..697 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 18641635..18641797 | 143..305 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 18641459..18641575 | 29..145 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 18642404..18642481 | 696..773 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-29 15:52:29 has no hits.
BS15506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:37 Download gff for
BS15506.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5473-PA | 177..933 | 17..773 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:08 Download gff for
BS15506.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5473-PB | 177..933 | 17..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 03:21:37 Download gff for
BS15506.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 425..1181 | 17..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-29 16:16:57 Download gff for
BS15506.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 425..1181 | 17..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-29 16:16:57 Download gff for
BS15506.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18641459..18641572 | 29..142 | 100 | <- | Plus |
| 2R | 18641635..18641796 | 143..304 | 100 | <- | Plus |
| 2R | 18641859..18642067 | 305..513 | 100 | <- | Plus |
| 2R | 18642132..18642314 | 514..696 | 100 | <- | Plus |
| 2R | 18642405..18642481 | 697..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 03:21:37 Download gff for
BS15506.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14528964..14529077 | 29..142 | 100 | <- | Plus |
| arm_2R | 14529140..14529301 | 143..304 | 100 | <- | Plus |
| arm_2R | 14529364..14529572 | 305..513 | 100 | <- | Plus |
| arm_2R | 14529637..14529819 | 514..696 | 100 | <- | Plus |
| arm_2R | 14529910..14529986 | 697..773 | 100 | | Plus |
BS15506.5prime Sequence
899 bp (791 high quality bases) assembled on 2006-12-21
> BS15506.5prime
GAAGTTATCCTTCGACATGGTGCTCGTGCTGAATGGTGTGCTGCAGGATG
ACTGCCCCATGGACACCAACAGCCTGTTCCTGCATCATCCCGTCTACAGA
GACTACGCCCAGCAGCTGCACTCCATTCAGGCCAAGTCGGTGGGTCCGGT
GGGTCTGCTCTACGTGGGTCAGCGGGAGATGGCCGCCTCTGCCCCGCACG
ACAAGCACGTCAACATCATCGGTGCCGACGATGCCACCACCTGTATTATC
GTTGTGGTCCGGCACTCCGGATCTGGTGCTGTGGCCCTGGCGCACTTCGA
TGGCAGCGGCGTGGACGAGGCTGTGTGCACCATGGTGTCGCGGGTTCAGG
AGCTGGCCGTCGGCTATCCGGAGGGTCGCATCGAGTTGCAGTTGATTGGT
GGCTATCGCGATGCCAAGGGATACGGCGAGGACGTATTCTTCAGCATTAT
GCAATCATTCCACAATCACCTACTTGAAATCGATCTGACGCAGGCTTGCG
TGGGCGAGCTAAATACCATGATGCGCGGCGAGATCAACTGCCCCATCATC
TATGGAGTGGGCGTGAACATCAAGACTGGTGAGATCTTTCCGGCCTCCTT
TCCAGACCGAGGACCCGACCGGGAGCTACGCGATGCTCGCATCTTCATGG
GCGCGCAGTCGGTTCTGGATATATACGACTCCTCGCTGGGCATGCTACGC
ATTGGACCCTTTAACTACGATCCTTTGCGCGGCGCTGATCTGTGGCTATC
ACAAACGGATGAGTTTCTGTTGCAGCACCTGTCCTCCAGTCCAGACGTGG
AGCCGCCTCACTTTGCGCCTCAGACGCGTGCCACCATTANGTTTATACAG
GAGAATCAGTTCCCCGCCGTCACCGTTTTCAGGGACATCGGCCGCGCTA
BS15506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5473-PA | 933 | SP2637-RA | 1..871 | 17..887 | 4311 | 99.7 | Plus |
| CG5473-PB | 933 | SP2637-RB | 1..871 | 17..887 | 4311 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP2637-RD | 1876 | CG5473-RD | 359..1242 | 17..899 | 4369 | 99.7 | Plus |
| SP2637-RC | 1770 | CG5473-RC | 253..1136 | 17..899 | 4369 | 99.7 | Plus |
| SP2637-RB | 1450 | CG5473-RB | 359..1242 | 17..899 | 4369 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18642404..18642657 | 270..17 | 1255 | 99.6 | Minus |
| 2R | 25286936 | 2R | 18641857..18642067 | 663..453 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18642132..18642315 | 452..269 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 18641635..18641797 | 823..661 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 18641496..18641575 | 899..821 | 339 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-01-31 03:48:46 has no hits.
BS15506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:38 Download gff for
BS15506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5473-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:09 Download gff for
BS15506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5473-PB | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:51:11 Download gff for
BS15506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RB | 359..1241 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:23:38 Download gff for
BS15506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RB | 359..1241 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:23:38 Download gff for
BS15506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18641497..18641572 | 824..898 | 97 | <- | Minus |
| 2R | 18641635..18641796 | 662..823 | 100 | <- | Minus |
| 2R | 18641859..18642067 | 453..661 | 100 | <- | Minus |
| 2R | 18642132..18642314 | 270..452 | 100 | <- | Minus |
| 2R | 18642405..18642658 | 17..269 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:51:11 Download gff for
BS15506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14529002..14529077 | 824..898 | 97 | <- | Minus |
| arm_2R | 14529140..14529301 | 662..823 | 100 | <- | Minus |
| arm_2R | 14529364..14529572 | 453..661 | 100 | <- | Minus |
| arm_2R | 14529637..14529819 | 270..452 | 100 | <- | Minus |
| arm_2R | 14529910..14530163 | 17..269 | 99 | <- | Minus |
BS15506.complete Sequence
965 bp assembled on 2008-08-14
GenBank Submission: KX800574
> BS15506.complete
GAAGTTATCAGTCGACATGGTGCTCGTGCTGAATGGTGTGCTGCAGGATG
ACTGCCCCATGGACACCAACAGCCTGTTCCTGCAGCATCCCGTCTACAGA
GACTACGCCCAGCAGCTGCACTCCATTCAGGCCAAGTCGGTGGGTCCGGT
GGGTCTGCTCTACGTGGGTCAGCGGGAGATGGCCGCCTCTGCCCCGCACG
ACAAGCACGTCAACATCATCGGTGCCGACGATGCCACCACCTGTATTATC
GTTGTGGTCCGGCACTCCGGATCTGGTGCTGTGGCCCTGGCGCACTTCGA
TGGCAGCGGCGTGGACGAGGCTGTGTGCACCATGGTGTCGCGGGTTCAGG
AGCTGGCCGTCGGCTATCCGGAGGGTCGCATCGAGTTGCAGTTGATTGGT
GGCTATCGCGATGCCAAGGGATACGGCGAGGACGTATTCTTCAGCATTAT
GCAATCATTCCACAATCACCTACTTGAAATCGATCTGACGCAGGCTTGCG
TGGGCGAGCTAAATACCATGATGCGCGGCGAGATCAACTGCCCCATCATC
TATGGAGTGGGCGTGAACATCAAGACTGGTGAGATCTTTCCGGCCTCCTT
TCCAGACCGAGGACCCGACCGGGAGCTACGCGATGCTCGCATCTTCATGG
GCGCGCAGTCGGTTCTGGATATATACGACTCCTCGCTGGGCATGCTACGC
ATTGGACCCTTTAACTACGATCCTTTGCGCGGCGCTGATCTGTGGCTATC
ACAAACGGATGAGTTTCTGTTGCAGCACCTGTCCTCCAGTCCAGACGTGG
AGCCGCCTCACTTTGCGCCTCAGACGCGTGCCACCATTAGGTTTATACAG
GAGAATCAGTTCCCCGCCGTCACCGTTTTCAGGGACAATCGGCCGCGCTA
CTTCCGGCGGGATGACGCCACGGGCTTCTGGGTGCTGATACAAGATTGAA
AGCTTTCTAGACCAT
BS15506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP2637-RB | 933 | CG5473-PB | 1..933 | 17..949 | 4665 | 100 | Plus |
| SP2637-RA | 933 | CG5473-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
| SP2637-RD | 933 | CG5473-PD | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP2637-RB | 1450 | CG5473-RB | 359..1291 | 17..949 | 4665 | 100 | Plus |
| SP2637-RA | 1340 | CG5473-RA | 249..1181 | 17..949 | 4665 | 100 | Plus |
| SP2637-RD | 1876 | CG5473-RD | 359..1279 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18642404..18642657 | 270..17 | 1270 | 100 | Minus |
| 2R | 25286936 | 2R | 18641857..18642067 | 663..453 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18642132..18642315 | 452..269 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 18641635..18641797 | 823..661 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 18641459..18641575 | 937..821 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:04:33 has no hits.
BS15506.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:48 Download gff for
BS15506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RB | 347..1290 | 9..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:51 Download gff for
BS15506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 249..1180 | 17..948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:09 Download gff for
BS15506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RB | 355..1286 | 17..948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:04 Download gff for
BS15506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 249..1180 | 17..948 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:04 Download gff for
BS15506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18641859..18642067 | 453..661 | 100 | <- | Minus |
| 2R | 18642132..18642314 | 270..452 | 100 | <- | Minus |
| 2R | 18642405..18642657 | 17..269 | 100 | | Minus |
| 2R | 18641635..18641796 | 662..823 | 100 | <- | Minus |
| 2R | 18641452..18641572 | 824..946 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:51 Download gff for
BS15506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14528957..14529077 | 824..946 | 96 | <- | Minus |
| arm_2R | 14529140..14529301 | 662..823 | 100 | <- | Minus |
| arm_2R | 14529364..14529572 | 453..661 | 100 | <- | Minus |
| arm_2R | 14529637..14529819 | 270..452 | 100 | <- | Minus |
| arm_2R | 14529910..14530162 | 17..269 | 100 | | Minus |
BS15506.pep Sequence
Translation from 16 to 948
> BS15506.pep
MVLVLNGVLQDDCPMDTNSLFLQHPVYRDYAQQLHSIQAKSVGPVGLLYV
GQREMAASAPHDKHVNIIGADDATTCIIVVVRHSGSGAVALAHFDGSGVD
EAVCTMVSRVQELAVGYPEGRIELQLIGGYRDAKGYGEDVFFSIMQSFHN
HLLEIDLTQACVGELNTMMRGEINCPIIYGVGVNIKTGEIFPASFPDRGP
DRELRDARIFMGAQSVLDIYDSSLGMLRIGPFNYDPLRGADLWLSQTDEF
LLQHLSSSPDVEPPHFAPQTRATIRFIQENQFPAVTVFRDNRPRYFRRDD
ATGFWVLIQD*
BS15506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP2637-PB | 310 | CG5473-PB | 1..310 | 1..310 | 1630 | 100 | Plus |
| SP2637-PA | 310 | CG5473-PA | 1..310 | 1..310 | 1630 | 100 | Plus |
| SP2637-PD | 310 | CG5473-PD | 1..309 | 1..309 | 1619 | 99.4 | Plus |
| SP2637-PC | 310 | CG5473-PC | 1..309 | 1..309 | 1619 | 99.4 | Plus |
