Clone BS15511 Report

Search the DGRC for BS15511

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:155
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptA16-RA
Protein status:BS15511.pep: full length peptide match
Sequenced Size:1163

Clone Sequence Records

BS15511.3prime Sequence

841 bp (796 high quality bases) assembled on 2006-12-21

> BS15511.3prime
ATGGTCTAGAAAGCTTCTACCATTCCGTGTATCGCTGTCGCAGACTCTGC
CTTTTGGCAACGTGATGCATCAAGCGCTGCTGACGTCGTTCTCGATTCAT
TTCGTAGGCCTTGAGCAGCGAGGGGCACGTGCGCTTGATGAACTCCTCCG
ATTGCCAGAAGAGTCCGCCTTGGTTCTCGTAGCGCAGAAGGAATTCAACC
TTTCCCGCCTTGGTCTCCTTGCCCAGAATGCGTTCAATGCCATTCTCGGG
CTTGATGCGTCTGAAGAAGTCCTCGTCGTTGTACTCGGTGACCACCTCCT
CGCCGACTTCGTTTAGCATATCCTCGATGCTGAGCAGTCCATCCTGCAGC
CGCTCGCCGTTCTGTTCGACGCGCTGCACGTATGTCAACGGGTGCTGCTT
GAGGTAATCCTCCGCCTCGGCGATTGTCTTGGCCAGATCGAACTCCTCCT
CCGCCTCCTCCTGCTCATCGTCATCGTTGTCCTCGTACTCACCGTCCAGC
TCCATGCCATCACAGTTAGCGCCGCTGGGCGAGGAGGTTCGTTTGGTATG
CATGGAGCGTCGCTTTCTTTTCATCCAGTTCCCGCCGTCGTTTTCCTTGA
CGTCCGGATGGAAGCGTACCTTCTTCACGCGCACGGACGACGAGGCGGAA
TCTGTTGTTTCGGGGGTGGACTGGCTGGGTGTCTGCTGCGACTCCAGCAT
GCTGCCGCTGATGCTACTAGAGGCGGACGTGGGTGTTGATGTGGATGTGG
ATGCTGATACGGAGGCGCCGGTGCTCTCCGCCAGCGTGGTTTCCTTGANG
TTCTGTGATATAAGCTTGACTTTCGTCTCGAAAGCAGTGCA

BS15511.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9933-PA 1131 A16-RA 307..1124 841..24 4046 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1366 CG9933-RA 441..1258 841..24 4064 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13020229..13020872 198..841 3194 99.7 Plus
2L 23513712 2L 13019798..13019928 71..201 655 100 Plus
2L 23513712 2L 13019683..13019730 24..71 240 100 Plus
Blast to na_te.dros performed on 2015-01-30 12:18:58 has no hits.

BS15511.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:46 Download gff for BS15511.3prime
Subject Subject Range Query Range Percent Splice Strand
A16-PA 308..1131 17..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:17 Download gff for BS15511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9933-PA 308..1131 17..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:34:29 Download gff for BS15511.3prime
Subject Subject Range Query Range Percent Splice Strand
A16-RA 442..1269 13..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 13:59:26 Download gff for BS15511.3prime
Subject Subject Range Query Range Percent Splice Strand
A16-RA 442..1269 13..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 13:59:26 Download gff for BS15511.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13019672..13019729 13..70 93 <- Plus
2L 13019798..13019926 71..199 100 <- Plus
2L 13020231..13020871 200..840 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:34:29 Download gff for BS15511.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13019672..13019729 13..70 93 <- Plus
arm_2L 13019798..13019926 71..199 100 <- Plus
arm_2L 13020231..13020871 200..840 99   Plus

BS15511.5prime Sequence

898 bp (759 high quality bases) assembled on 2006-12-21

> BS15511.5prime
GAAGTTATCCTTCGACATGGATACCAAGTCCAATGATGACTCGGCTGGCA
GTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGAGACA
ACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAG
CAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATGGAGG
GAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTCGTGC
GGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATCCGGC
CAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTCAAGC
TTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGGCGCC
TCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTAGTAG
CATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCCACCC
CCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGTACGC
TTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAAGAAA
GCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCTAACT
GTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGATGAG
CAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGC
GGAGGATTACCTNCAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAAC
AGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCATCGAGGATATGCTA
AACGAAGTCGGCGAGGAGGTGGTCACCGAGTACAACGACGAAGACTTC

BS15511.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9933-PA 1131 A16-RA 1..882 17..898 4341 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1366 CG9933-RA 133..1016 15..898 4379 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13020297..13021180 898..15 4379 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 09:17:00 has no hits.

BS15511.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:47 Download gff for BS15511.5prime
Subject Subject Range Query Range Percent Splice Strand
A16-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:18 Download gff for BS15511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9933-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:13:58 Download gff for BS15511.5prime
Subject Subject Range Query Range Percent Splice Strand
A16-RA 133..1016 15..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:46 Download gff for BS15511.5prime
Subject Subject Range Query Range Percent Splice Strand
A16-RA 133..1016 15..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:38:46 Download gff for BS15511.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13020297..13021180 15..898 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:13:58 Download gff for BS15511.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13020297..13021180 15..898 99   Minus

BS15511.complete Sequence

1163 bp assembled on 2008-08-14

GenBank Submission: KX800796

> BS15511.complete
GAAGTTATCCTTCGACATGGATACCAAGTCCAATGATGACTCGGCTGGCA
GTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGAGACA
ACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAG
CAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATGGAGG
GAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTCGTGC
GGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATCCGGC
CAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTCAAGC
TTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGGCGCC
TCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTAGTAG
CATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCCACCC
CCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGTACGC
TTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAAGAAA
GCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCTAACT
GTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGATGAG
CAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGC
GGAGGATTACCTCAAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAAC
AGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCATCGAGGATATGCTA
AACGAAGTCGGCGAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTT
CAGACGCATCAAGCCCGAGAATGGCATTGAACGCATTCTGGGCAAGGAGA
CCAAGGCGGGAAAGGTTGAATTCCTTCTGCGCTACGAGAACCAAGGCGGA
CTCTTCTGGCAATCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGCTGCT
CAAGGCCTACGAAATGAATCGAGAACGACGTCAGCAGCGCTTGATGCATC
ACGTTGCCAAAAGGCAGAGTCTGCGACAGCGATACACGGATTTCTAGAAG
CTTTCTAGACCAT

BS15511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1131 CG9933-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
A16-RA 1366 CG9933-RA 133..1269 15..1151 5670 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13020229..13021180 966..15 4760 100 Minus
2L 23513712 2L 13019798..13019928 1093..963 655 100 Minus
2L 23513712 2L 13019672..13019730 1151..1093 280 98.3 Minus
Blast to na_te.dros performed on 2014-11-27 06:39:35 has no hits.

BS15511.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:08 Download gff for BS15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 128..1269 15..1157 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:59 Download gff for BS15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 135..1265 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:36 Download gff for BS15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 130..1260 17..1147 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:00 Download gff for BS15511.complete
Subject Subject Range Query Range Percent Splice Strand
A16-RA 135..1265 17..1147 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:00 Download gff for BS15511.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13019676..13019729 1094..1147 100 <- Minus
2L 13019798..13019926 965..1093 100 <- Minus
2L 13020231..13021178 17..964 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:59 Download gff for BS15511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13019676..13019729 1094..1147 100 <- Minus
arm_2L 13019798..13019926 965..1093 100 <- Minus
arm_2L 13020231..13021178 17..964 100   Minus

BS15511.pep Sequence

Translation from 16 to 1146

> BS15511.pep
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESINKESGSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTSTPTSASSSISGSM
LESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMH
TKRTSSPSGANCDGMELDGEYEDNDDDEQEEAEEEFDLAKTIAEAEDYLK
QHPLTYVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWQSEEFIKRTCPSLLKAYEM
NRERRQQRLMHHVAKRQSLRQRYTDF*

BS15511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
A16-PA 376 CG9933-PA 1..376 1..376 1938 100 Plus