Clone Sequence Records
BS15511.3prime Sequence
841 bp (796 high quality bases) assembled on 2006-12-21
> BS15511.3prime
ATGGTCTAGAAAGCTTCTACCATTCCGTGTATCGCTGTCGCAGACTCTGC
CTTTTGGCAACGTGATGCATCAAGCGCTGCTGACGTCGTTCTCGATTCAT
TTCGTAGGCCTTGAGCAGCGAGGGGCACGTGCGCTTGATGAACTCCTCCG
ATTGCCAGAAGAGTCCGCCTTGGTTCTCGTAGCGCAGAAGGAATTCAACC
TTTCCCGCCTTGGTCTCCTTGCCCAGAATGCGTTCAATGCCATTCTCGGG
CTTGATGCGTCTGAAGAAGTCCTCGTCGTTGTACTCGGTGACCACCTCCT
CGCCGACTTCGTTTAGCATATCCTCGATGCTGAGCAGTCCATCCTGCAGC
CGCTCGCCGTTCTGTTCGACGCGCTGCACGTATGTCAACGGGTGCTGCTT
GAGGTAATCCTCCGCCTCGGCGATTGTCTTGGCCAGATCGAACTCCTCCT
CCGCCTCCTCCTGCTCATCGTCATCGTTGTCCTCGTACTCACCGTCCAGC
TCCATGCCATCACAGTTAGCGCCGCTGGGCGAGGAGGTTCGTTTGGTATG
CATGGAGCGTCGCTTTCTTTTCATCCAGTTCCCGCCGTCGTTTTCCTTGA
CGTCCGGATGGAAGCGTACCTTCTTCACGCGCACGGACGACGAGGCGGAA
TCTGTTGTTTCGGGGGTGGACTGGCTGGGTGTCTGCTGCGACTCCAGCAT
GCTGCCGCTGATGCTACTAGAGGCGGACGTGGGTGTTGATGTGGATGTGG
ATGCTGATACGGAGGCGCCGGTGCTCTCCGCCAGCGTGGTTTCCTTGANG
TTCTGTGATATAAGCTTGACTTTCGTCTCGAAAGCAGTGCA
BS15511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9933-PA | 1131 | A16-RA | 307..1124 | 841..24 | 4046 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-RA | 1366 | CG9933-RA | 441..1258 | 841..24 | 4064 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13020229..13020872 | 198..841 | 3194 | 99.7 | Plus |
2L | 23513712 | 2L | 13019798..13019928 | 71..201 | 655 | 100 | Plus |
2L | 23513712 | 2L | 13019683..13019730 | 24..71 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 12:18:58 has no hits.
BS15511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:46 Download gff for
BS15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-PA | 308..1131 | 17..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:17 Download gff for
BS15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9933-PA | 308..1131 | 17..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:34:29 Download gff for
BS15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 442..1269 | 13..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 13:59:26 Download gff for
BS15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 442..1269 | 13..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 13:59:26 Download gff for
BS15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13019672..13019729 | 13..70 | 93 | <- | Plus |
2L | 13019798..13019926 | 71..199 | 100 | <- | Plus |
2L | 13020231..13020871 | 200..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:34:29 Download gff for
BS15511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13019672..13019729 | 13..70 | 93 | <- | Plus |
arm_2L | 13019798..13019926 | 71..199 | 100 | <- | Plus |
arm_2L | 13020231..13020871 | 200..840 | 99 | | Plus |
BS15511.5prime Sequence
898 bp (759 high quality bases) assembled on 2006-12-21
> BS15511.5prime
GAAGTTATCCTTCGACATGGATACCAAGTCCAATGATGACTCGGCTGGCA
GTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGAGACA
ACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAG
CAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATGGAGG
GAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTCGTGC
GGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATCCGGC
CAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTCAAGC
TTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGGCGCC
TCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTAGTAG
CATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCCACCC
CCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGTACGC
TTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAAGAAA
GCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCTAACT
GTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGATGAG
CAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGC
GGAGGATTACCTNCAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAAC
AGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCATCGAGGATATGCTA
AACGAAGTCGGCGAGGAGGTGGTCACCGAGTACAACGACGAAGACTTC
BS15511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9933-PA | 1131 | A16-RA | 1..882 | 17..898 | 4341 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-RA | 1366 | CG9933-RA | 133..1016 | 15..898 | 4379 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13020297..13021180 | 898..15 | 4379 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:17:00 has no hits.
BS15511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:47 Download gff for
BS15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:18 Download gff for
BS15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9933-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:13:58 Download gff for
BS15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 133..1016 | 15..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:46 Download gff for
BS15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 133..1016 | 15..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:38:46 Download gff for
BS15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13020297..13021180 | 15..898 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:13:58 Download gff for
BS15511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13020297..13021180 | 15..898 | 99 | | Minus |
BS15511.complete Sequence
1163 bp assembled on 2008-08-14
GenBank Submission: KX800796
> BS15511.complete
GAAGTTATCCTTCGACATGGATACCAAGTCCAATGATGACTCGGCTGGCA
GTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATGGTGGAGACA
ACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAG
CAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTTCGATGGAGG
GAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCGGGGTCGTGC
GGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGAACATCCGGC
CAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGAAAGTCAAGC
TTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGCACCGGCGCC
TCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGCCTCTAGTAG
CATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCCAGTCCACCC
CCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAGAAGGTACGC
TTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGATGAAAAGAAA
GCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGCGGCGCTAACT
GTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGATGACGATGAG
CAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGC
GGAGGATTACCTCAAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAAC
AGAACGGCGAGCGGCTGCAGGATGGACTGCTCAGCATCGAGGATATGCTA
AACGAAGTCGGCGAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTT
CAGACGCATCAAGCCCGAGAATGGCATTGAACGCATTCTGGGCAAGGAGA
CCAAGGCGGGAAAGGTTGAATTCCTTCTGCGCTACGAGAACCAAGGCGGA
CTCTTCTGGCAATCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGCTGCT
CAAGGCCTACGAAATGAATCGAGAACGACGTCAGCAGCGCTTGATGCATC
ACGTTGCCAAAAGGCAGAGTCTGCGACAGCGATACACGGATTTCTAGAAG
CTTTCTAGACCAT
BS15511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-RA | 1131 | CG9933-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-RA | 1366 | CG9933-RA | 133..1269 | 15..1151 | 5670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13020229..13021180 | 966..15 | 4760 | 100 | Minus |
2L | 23513712 | 2L | 13019798..13019928 | 1093..963 | 655 | 100 | Minus |
2L | 23513712 | 2L | 13019672..13019730 | 1151..1093 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:39:35 has no hits.
BS15511.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:08 Download gff for
BS15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 128..1269 | 15..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:59 Download gff for
BS15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 135..1265 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:36 Download gff for
BS15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 130..1260 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:00 Download gff for
BS15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
A16-RA | 135..1265 | 17..1147 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:00 Download gff for
BS15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13019676..13019729 | 1094..1147 | 100 | <- | Minus |
2L | 13019798..13019926 | 965..1093 | 100 | <- | Minus |
2L | 13020231..13021178 | 17..964 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:59 Download gff for
BS15511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13019676..13019729 | 1094..1147 | 100 | <- | Minus |
arm_2L | 13019798..13019926 | 965..1093 | 100 | <- | Minus |
arm_2L | 13020231..13021178 | 17..964 | 100 | | Minus |
BS15511.pep Sequence
Translation from 16 to 1146
> BS15511.pep
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESINKESGSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTSTPTSASSSISGSM
LESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMH
TKRTSSPSGANCDGMELDGEYEDNDDDEQEEAEEEFDLAKTIAEAEDYLK
QHPLTYVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWQSEEFIKRTCPSLLKAYEM
NRERRQQRLMHHVAKRQSLRQRYTDF*
BS15511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
A16-PA | 376 | CG9933-PA | 1..376 | 1..376 | 1938 | 100 | Plus |