Clone Sequence Records
BS15515.3prime Sequence
809 bp (713 high quality bases) assembled on 2006-12-21
> BS15515.3prime
ATGGTCTAGAAAGCTTCTACCCTTTAGCTCCTGCCATTGCTGGCAAACCG
GACAGGCTAACGCTTACGCCGGAAGTGGGCGTAACTGTGCCAGCAGCGGT
GGCCGACGAGGAGGATCGCTTGAGGGCCTTGCGTATAATCGTCCAGTCCT
CCATGATATCCTCCTCGCGCAGCATGTACACGACATAGGGACCCGTGACG
GTGACGGCCTTCTTGCGACCCGGTCCGCGCACCTTGCTCTGCCGCTTGTC
GGTGCCCCAGTCGGCCCACGAGATGTCCACGTTGTGGCGATCCTCCTCCA
GGCGACGGATGCGCTCCATGAACTCCTCGCGCAGATTGTCCAATGCCATG
TGTTTCTCGCTCTCAAAGTGCTGGACGGCAGCTTGTTCCTCGGACTGGTA
TTTGTGCTCGATATTCTGCAGTCGGTACTTGCGCAGGACGTCCGCCACCT
CGATCCTGGTGCGATACTTCTTGTCCAGTTCCTTTTGCGGCTGGACAAAC
TCCTCGGAACGCCCGGAACGCACCTCGGCCAATTGTCGTTCGATGAGATT
GATGCGCTCGACGTAGTACTGTTCCCGCAACTCGTTAAATTGGCGCTCCA
AGCTCAGCAAATCCTCGATGTGCTCTGCCCGCCGGCGGTCTATTTCACTG
GCATCCAACTCGGAGGAGTCATCCGAATCGCATTCGTTGGCCTCCTCCTC
GTCGGAGGTGTCGTGTGGCTGGCTGGAATTCGAGTGCTCCGATTCTCCGC
CAGAAACGTCGCCTTCGCCATCGGATTCGCCATTCTCACGGGCATGTCGA
CTGATAACT
BS15515.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4400-PA | 780 | CG4400-RA | 11..772 | 786..25 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-RA | 1323 | CG4400-RA | 186..957 | 795..25 | 3835 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12908352..12908690 | 25..363 | 1695 | 100 | Plus |
X | 23542271 | X | 12908936..12909180 | 362..606 | 1225 | 100 | Plus |
X | 23542271 | X | 12909248..12909427 | 607..786 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 03:53:34 has no hits.
BS15515.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:53 Download gff for
BS15515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-PA | 1..780 | 17..795 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:24 Download gff for
BS15515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-PA | 1..780 | 17..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:51:52 Download gff for
BS15515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 177..965 | 17..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:24:18 Download gff for
BS15515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Brms1-RA | 177..965 | 17..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:24:18 Download gff for
BS15515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12908344..12908688 | 17..361 | 99 | <- | Plus |
X | 12908936..12909180 | 362..606 | 100 | <- | Plus |
X | 12909248..12909446 | 607..803 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:51:52 Download gff for
BS15515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12802969..12803213 | 362..606 | 100 | <- | Plus |
arm_X | 12802377..12802721 | 17..361 | 99 | <- | Plus |
arm_X | 12803281..12803479 | 607..803 | 97 | | Plus |
BS15515.5prime Sequence
810 bp (810 high quality bases) assembled on 2006-12-21
> BS15515.5prime
GAAGTTATCCTTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAG
GCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACAC
GACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTC
CGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGG
ATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTAC
GTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGG
GCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATC
GCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAAT
ATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGA
GAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGC
GCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCC
GACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAA
GAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGG
AGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCC
TCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAG
CGTTAGCCTGTCCGGTTTGCCAGCAATGGCAGGAGCTAGCGGATAGAAGC
TTTCTAGACC
BS15515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4400-PA | 780 | CG4400-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-RA | 1323 | CG4400-RA | 186..965 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12908344..12908690 | 796..450 | 1735 | 100 | Minus |
X | 23542271 | X | 12908936..12909180 | 451..207 | 1225 | 100 | Minus |
X | 23542271 | X | 12909248..12909437 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 02:50:51 has no hits.
BS15515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:54 Download gff for
BS15515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:25 Download gff for
BS15515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:29:01 Download gff for
BS15515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 174..969 | 7..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:05:26 Download gff for
BS15515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Brms1-RA | 174..969 | 7..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:05:26 Download gff for
BS15515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12908340..12908688 | 452..802 | 99 | <- | Minus |
X | 12908936..12909180 | 207..451 | 100 | <- | Minus |
X | 12909248..12909449 | 7..206 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:29:01 Download gff for
BS15515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12802969..12803213 | 207..451 | 100 | <- | Minus |
arm_X | 12803281..12803482 | 7..206 | 98 | | Minus |
arm_X | 12802373..12802721 | 452..802 | 99 | <- | Minus |
BS15515.complete Sequence
812 bp assembled on 2006-11-29
GenBank Submission: FJ637938
> BS15515.complete
GAAGTTATCAGTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAG
GCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACAC
GACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTC
CGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGG
ATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTAC
GTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGG
GCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATC
GCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAAT
ATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGA
GAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGC
GCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCC
GACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAA
GAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGG
AGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCC
TCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAG
CGTTAGCCTGTCCGGTTTGCCAGCAATGGCAGGAGCTAGCGGATAGAAGC
TTTCTAGACCAT
BS15515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-RA | 780 | CG4400-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-RA | 1323 | CG4400-RA | 186..965 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12908344..12908690 | 796..450 | 1735 | 100 | Minus |
X | 23542271 | X | 12908936..12909180 | 451..207 | 1225 | 100 | Minus |
X | 23542271 | X | 12909248..12909437 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:25 has no hits.
BS15515.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:32 Download gff for
BS15515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:00 Download gff for
BS15515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 153..945 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:55 Download gff for
BS15515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 186..965 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:32 Download gff for
BS15515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 153..945 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:25 Download gff for
BS15515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Brms1-RA | 186..965 | 17..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:25 Download gff for
BS15515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12908344..12908688 | 452..796 | 100 | <- | Minus |
X | 12908936..12909180 | 207..451 | 100 | <- | Minus |
X | 12909248..12909437 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:55 Download gff for
BS15515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12802377..12802721 | 452..796 | 100 | <- | Minus |
arm_X | 12802969..12803213 | 207..451 | 100 | <- | Minus |
arm_X | 12803281..12803470 | 17..206 | 100 | | Minus |
BS15515.pep Sequence
Translation from 16 to 795
> BS15515.pep
MPVKNGESDGEGDVSGGESEHSNSSQPHDTSDEEEANECDSDDSSELDAS
EIDRRRAEHIEDLLSLERQFNELREQYYVERINLIERQLAEVRSGRSEEF
VQPQKELDKKYRTRIEVADVLRKYRLQNIEHKYQSEEQAAVQHFESEKHM
ALDNLREEFMERIRRLEEDRHNVDISWADWGTDKRQSKVRGPGRKKAVTV
TGPYVVYMLREEDIMEDWTIIRKALKRSSSSATAAGTVTPTSGVSVSLSG
LPAMAGASG*
BS15515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-PA | 259 | CG4400-PA | 1..259 | 1..259 | 1323 | 100 | Plus |
CG14220-PB | 327 | CG14220-PB | 12..254 | 29..259 | 176 | 24.3 | Plus |
CG14220-PA | 327 | CG14220-PA | 12..254 | 29..259 | 176 | 24.3 | Plus |