Clone BS15515 Report

Search the DGRC for BS15515

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:155
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptBrms1-RA
Protein status:BS15515.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15515.3prime Sequence

809 bp (713 high quality bases) assembled on 2006-12-21

> BS15515.3prime
ATGGTCTAGAAAGCTTCTACCCTTTAGCTCCTGCCATTGCTGGCAAACCG
GACAGGCTAACGCTTACGCCGGAAGTGGGCGTAACTGTGCCAGCAGCGGT
GGCCGACGAGGAGGATCGCTTGAGGGCCTTGCGTATAATCGTCCAGTCCT
CCATGATATCCTCCTCGCGCAGCATGTACACGACATAGGGACCCGTGACG
GTGACGGCCTTCTTGCGACCCGGTCCGCGCACCTTGCTCTGCCGCTTGTC
GGTGCCCCAGTCGGCCCACGAGATGTCCACGTTGTGGCGATCCTCCTCCA
GGCGACGGATGCGCTCCATGAACTCCTCGCGCAGATTGTCCAATGCCATG
TGTTTCTCGCTCTCAAAGTGCTGGACGGCAGCTTGTTCCTCGGACTGGTA
TTTGTGCTCGATATTCTGCAGTCGGTACTTGCGCAGGACGTCCGCCACCT
CGATCCTGGTGCGATACTTCTTGTCCAGTTCCTTTTGCGGCTGGACAAAC
TCCTCGGAACGCCCGGAACGCACCTCGGCCAATTGTCGTTCGATGAGATT
GATGCGCTCGACGTAGTACTGTTCCCGCAACTCGTTAAATTGGCGCTCCA
AGCTCAGCAAATCCTCGATGTGCTCTGCCCGCCGGCGGTCTATTTCACTG
GCATCCAACTCGGAGGAGTCATCCGAATCGCATTCGTTGGCCTCCTCCTC
GTCGGAGGTGTCGTGTGGCTGGCTGGAATTCGAGTGCTCCGATTCTCCGC
CAGAAACGTCGCCTTCGCCATCGGATTCGCCATTCTCACGGGCATGTCGA
CTGATAACT

BS15515.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4400-PA 780 CG4400-RA 11..772 786..25 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-RA 1323 CG4400-RA 186..957 795..25 3835 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12908352..12908690 25..363 1695 100 Plus
X 23542271 X 12908936..12909180 362..606 1225 100 Plus
X 23542271 X 12909248..12909427 607..786 900 100 Plus
Blast to na_te.dros performed on 2015-01-31 03:53:34 has no hits.

BS15515.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:53 Download gff for BS15515.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-PA 1..780 17..795 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:24 Download gff for BS15515.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-PA 1..780 17..795 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:51:52 Download gff for BS15515.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 177..965 17..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:24:18 Download gff for BS15515.3prime
Subject Subject Range Query Range Percent Splice Strand
Brms1-RA 177..965 17..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:24:18 Download gff for BS15515.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12908344..12908688 17..361 99 <- Plus
X 12908936..12909180 362..606 100 <- Plus
X 12909248..12909446 607..803 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:51:52 Download gff for BS15515.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12802969..12803213 362..606 100 <- Plus
arm_X 12802377..12802721 17..361 99 <- Plus
arm_X 12803281..12803479 607..803 97   Plus

BS15515.5prime Sequence

810 bp (810 high quality bases) assembled on 2006-12-21

> BS15515.5prime
GAAGTTATCCTTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAG
GCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACAC
GACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTC
CGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGG
ATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTAC
GTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGG
GCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATC
GCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAAT
ATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGA
GAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGC
GCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCC
GACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAA
GAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGG
AGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCC
TCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAG
CGTTAGCCTGTCCGGTTTGCCAGCAATGGCAGGAGCTAGCGGATAGAAGC
TTTCTAGACC

BS15515.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4400-PA 780 CG4400-RA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-RA 1323 CG4400-RA 186..965 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12908344..12908690 796..450 1735 100 Minus
X 23542271 X 12908936..12909180 451..207 1225 100 Minus
X 23542271 X 12909248..12909437 206..17 950 100 Minus
Blast to na_te.dros performed on 2015-01-30 02:50:51 has no hits.

BS15515.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:28:54 Download gff for BS15515.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:25 Download gff for BS15515.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:29:01 Download gff for BS15515.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 174..969 7..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:05:26 Download gff for BS15515.5prime
Subject Subject Range Query Range Percent Splice Strand
Brms1-RA 174..969 7..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:05:26 Download gff for BS15515.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12908340..12908688 452..802 99 <- Minus
X 12908936..12909180 207..451 100 <- Minus
X 12909248..12909449 7..206 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:29:01 Download gff for BS15515.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12802969..12803213 207..451 100 <- Minus
arm_X 12803281..12803482 7..206 98   Minus
arm_X 12802373..12802721 452..802 99 <- Minus

BS15515.complete Sequence

812 bp assembled on 2006-11-29

GenBank Submission: FJ637938

> BS15515.complete
GAAGTTATCAGTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAG
GCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACAC
GACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTC
CGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGG
ATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTAC
GTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGG
GCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATC
GCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAAT
ATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGA
GAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGC
GCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCC
GACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAA
GAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGG
AGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCC
TCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAG
CGTTAGCCTGTCCGGTTTGCCAGCAATGGCAGGAGCTAGCGGATAGAAGC
TTTCTAGACCAT

BS15515.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-RA 780 CG4400-PA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-RA 1323 CG4400-RA 186..965 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12908344..12908690 796..450 1735 100 Minus
X 23542271 X 12908936..12909180 451..207 1225 100 Minus
X 23542271 X 12909248..12909437 206..17 950 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:03:25 has no hits.

BS15515.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:32 Download gff for BS15515.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:00 Download gff for BS15515.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 153..945 9..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:55 Download gff for BS15515.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 186..965 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:32 Download gff for BS15515.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 153..945 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:25 Download gff for BS15515.complete
Subject Subject Range Query Range Percent Splice Strand
Brms1-RA 186..965 17..796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:25 Download gff for BS15515.complete
Subject Subject Range Query Range Percent Splice Strand
X 12908344..12908688 452..796 100 <- Minus
X 12908936..12909180 207..451 100 <- Minus
X 12909248..12909437 17..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:55 Download gff for BS15515.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12802377..12802721 452..796 100 <- Minus
arm_X 12802969..12803213 207..451 100 <- Minus
arm_X 12803281..12803470 17..206 100   Minus

BS15515.pep Sequence

Translation from 16 to 795

> BS15515.pep
MPVKNGESDGEGDVSGGESEHSNSSQPHDTSDEEEANECDSDDSSELDAS
EIDRRRAEHIEDLLSLERQFNELREQYYVERINLIERQLAEVRSGRSEEF
VQPQKELDKKYRTRIEVADVLRKYRLQNIEHKYQSEEQAAVQHFESEKHM
ALDNLREEFMERIRRLEEDRHNVDISWADWGTDKRQSKVRGPGRKKAVTV
TGPYVVYMLREEDIMEDWTIIRKALKRSSSSATAAGTVTPTSGVSVSLSG
LPAMAGASG*

BS15515.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-PA 259 CG4400-PA 1..259 1..259 1323 100 Plus
CG14220-PB 327 CG14220-PB 12..254 29..259 176 24.3 Plus
CG14220-PA 327 CG14220-PA 12..254 29..259 176 24.3 Plus