Clone Sequence Records
BS15524.3prime Sequence
768 bp (694 high quality bases) assembled on 2006-12-21
> BS15524.3prime
ATGGTCTAGAAAGCTTTTACCTTAACTCGGGCGCATCATCTTGCGTTATG
TCACCGTACTTCCAGATGGCCAGATGCGCGACCCGAGCTGCTTCCTGCGC
GGCTTTGTACTGGTCCACTAGTTCCTTGAGCTTCCGCTCTCCACGCTGTT
CGGCCAGAACAAGGCCCTCGGCTACAAGCTGCTTTCCAAAATCGACTTTA
GTAGTTGGATCGCGAAGAGTGGCCAAGTTCGGCGACCCAGTCACCTTTAG
CTCGACATTGAGTTGAACCTTATGGTTCAAAACGTCTTCGGAAAAGGCAC
GCAAGGCTTCTTCCTTATCTTCGTTGTCAGTTGGCAGGGCGACTAAGGCC
AAAGCATACTCCGTAGCGTAGGGCTTTTCGCTGCTGAAGGCTGGTGGCAG
GGCTGCCAAACGGTTGGTCGGAAGTGTCTCCTTGTTTCCATAATCGATGT
ACAGGACTGTAGCATTACTGCCCTGCACGCGTTCCACCTTGGCACGATAC
CACTGATTATCAAGTGTAAACTGAGCGGCCACCAGGTCACCACGCTTTGG
CGTGTACGATCCAGCGATGGGTGGGTTGGACTGGAAATCGGCGTGAAGTT
TGCTCATAAGCGACTCTAGCTTGGATCCGCTCTCCACAGATTGCGCGAAG
AATGTCAGAGTTTCGGTGATCTCAGTGACAATAACGTTTTCGTAGTTGAC
TTTACGCTCCGCCCCTACCTTGTCCTCCTTTTCTTCCTCCGGGACAGTTT
TTTCTTTAGGCCCTTCTT
BS15524.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7008-PA | 2781 | Tudor-SN-RA | 2030..2774 | 768..24 | 3625 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 3411 | CG7008-RB | 2200..2954 | 768..14 | 3670 | 99.1 | Minus |
| Tudor-SN-RA | 3159 | CG7008-RA | 2200..2954 | 768..14 | 3670 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 259500..259915 | 14..429 | 2035 | 99.3 | Plus |
| 3L | 28110227 | 3L | 260311..260651 | 428..768 | 1645 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:56:46 has no hits.
BS15524.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:29:07 Download gff for
BS15524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7008-PA | 2030..2781 | 17..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:46 Download gff for
BS15524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7008-PA | 2030..2781 | 17..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:38:12 Download gff for
BS15524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 2200..2954 | 14..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:25 Download gff for
BS15524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 2200..2954 | 14..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:25 Download gff for
BS15524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 259500..259913 | 14..427 | 99 | <- | Plus |
| 3L | 260311..260651 | 428..768 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:38:12 Download gff for
BS15524.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 259500..259913 | 14..427 | 99 | <- | Plus |
| arm_3L | 260311..260651 | 428..768 | 98 | | Plus |
BS15524.5prime Sequence
748 bp (747 high quality bases) assembled on 2006-12-21
> BS15524.5prime
GAAGTTATCCTTTGAGGTGGCAACAGCAGCGAACACCGCGACAGCTGCCG
GAGCAGCTAAAGACGCCCCGCCAGCGCCTACAAATTCGTTGTCCGGCATT
GTAAAGCAGGTTCTCTCCGGCGATACGGTAGTTATTCGCGCAACTAAGGG
TGCCCCGCCTCCGGAGAAACAAATTACTTTCTCGCATGTCCTTGCCCCGA
AGTTGGCCCGTCGTCCTGGCGCTGGCGGAGACGAGACCAAGGACGAGCCC
TGGGCTTGGGAGTCGCGGGAATTCTTGCGTAAAAAGTTGATAGGTGTGGA
GGTGACTTTCACGTTTGACAAGCCAGCCAACTCGAACCGGGAGTACGGTT
TTGTGTGGATCGGTAAGGACAAGGAAACCGGTGAAAATGTGGTCGAGTCG
ATTGTCCGAGAGGGCCTGGTGTCGGTCCGTCGAGAGGGACGTCCCACAGC
CGAGCAGCAAACACTCATCGAGTTGGAGGACCAGGCGCGTGCAGCAGGCC
GCGGAAAATGGTCGCCCACCGCAAGTGCCGCCGACAAGGTTCGCAACATC
AAGTGGTCCCATGAGAATCCCGCACACCTGGTCGACATCTACGGAGGAAA
CCCCGTGAAGGCGATCATCGAGCACGTGCGCGATGGATCCACGGTCCGAG
CATTCTTGCTGCCGGACTTCCACTACATAACGCTAATGATTTCGGGCATC
CGTTGTCCAGGAGTGAAATTAGATGCTGATGGCAAGCCCGACCTCAGT
BS15524.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7008-PA | 2781 | Tudor-SN-RA | 2..732 | 18..748 | 3630 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 3411 | CG7008-RB | 172..902 | 18..748 | 3640 | 99.9 | Plus |
| Tudor-SN-RA | 3159 | CG7008-RA | 172..902 | 18..748 | 3640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 262180..262821 | 748..107 | 3210 | 100 | Minus |
| 3L | 28110227 | 3L | 264116..264209 | 111..18 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-01-30 12:21:04 has no hits.
BS15524.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:29:08 Download gff for
BS15524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7008-PA | 2..732 | 18..748 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:06:48 Download gff for
BS15524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7008-PA | 2..732 | 18..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:35:06 Download gff for
BS15524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 172..902 | 18..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 13:59:55 Download gff for
BS15524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 172..902 | 18..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 13:59:55 Download gff for
BS15524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 262180..262818 | 110..748 | 100 | <- | Minus |
| 3L | 264118..264209 | 18..109 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:35:06 Download gff for
BS15524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 264118..264209 | 18..109 | 98 | | Minus |
| arm_3L | 262180..262818 | 110..748 | 100 | <- | Minus |
BS15524.complete Sequence
2813 bp assembled on 2010-05-14
GenBank Submission: KX806385
> BS15524.complete
GAAGTTATCAGTCGACATGGCAACAGCAGCGAACACCGCGACAGCTGCCG
GAGCAGCTAAAGACGCCCCGCCAGCGCCTACAAAGTCGTTGTCCGGCATT
GTAAAGCAGGTTCTCTCCGGCGATACGGTAGTTATTCGCGCAACTAAGGG
TGCCCCGCCTCCGGAGAAACAAATTACTTTCTCGCATGTCCTTGCCCCGA
AGTTGGCCCGTCGTCCTGGCGCTGGCGGAGACGAGACCAAGGACGAGCCC
TGGGCTTGGGAGTCGCGGGAATTCTTGCGTAAAAAGTTGATAGGTGTGGA
GGTGACTTTCACGTTTGACAAGCCAGCCAACTCGAACCGGGAGTACGGTT
TTGTGTGGATCGGTAAGGACAAGGAAACCGGTGAAAATGTGGTCGAGTCG
ATTGTCCGAGAGGGCCTGGTGTCGGTCCGTCGAGAGGGACGTCCCACAGC
CGAGCAGCAAACACTCATCGAGTTGGAGGACCAGGCGCGTGCAGCAGGCC
GCGGAAAATGGTCGCCCACCGCAAGTGCCGCCGACAAGGTTCGCAACATC
AAGTGGTCCCATGAGAATCCCGCACACCTGGTCGACATCTACGGAGGAAA
CCCCGTGAAGGCGATCATCGAGCACGTGCGCGATGGATCCACGGTCCGAG
CATTCTTGCTGCCGGACTTCCACTACATAACGCTAATGATTTCGGGCATC
CGTTGTCCAGGAGTGAAATTAGATGCTGATGGCAAGCCCGACCTCAGTGT
AAAGGTGCCTTTTGCTGACGAAGCTCGCTACTATGTGGAAACCCGCCTGT
TGCAACGCGATGTGGAAATCCGACTGGAATCGGTTAACAACTCTAACTTC
ATTGGAACTATTCTGTATCCCAAGGGAAACATTGCAGAATCACTCCTGCG
AGAGGGACTTGCCAAGTGTGTGGACTGGTCAATGGCTGTTATGAAGACAG
GCACCGATAAACTGCGGGCTGCGGAGCGTTTTGCCAAGGAGAAGCGTCTT
CGCCAATGGCAGGACTACCAAGCTAAAACTCCTGCTTTCAACTCGAAGGA
GAAAGACTTCTCTGGAACAGTGGTGGAAGTCTTCAATGGCGATGCTATTA
ATGTACGTCTTTCCAATGGACAAGTAAAGAAGGTTTTCTTCTCGTCTATC
AGGCCGCCGCGTGACCAACGCGCGGTTGTTGGCACCGATGGCGAGGAAAT
CGTCAAGGCACCACCACGCGGAAAAAACTACAGACCACTTTACGAAATTC
CACACATGTTCGATGCCCGTGAGTTTCTGCGTAAAAAACTAATTAATAAA
AAAGTTCAATGCAACCTGGACTACATCTCACCGCCGCGCGAAAACTTCCC
TGAGAAATACTGCTATACCGTCTCTATTGGCGGTCAGAACGTGGCTGAGG
CAATGGTAGCCAAAGGTTTGGCAACATGTGTTCGCTATCGCCAGGACGAC
GATCAGAGATCTTCCGCCTATGATCAATTGATTGCCGCCGAACAGCAAGC
CATCAAGGGACTAAAGGGACTGCACGCAAAGAAGGATAACGCCACACTGC
GTGTTAACGACCTGACTGTTGATCATTCCCGAATTAAAGTTCAATACTTG
CCATCGTGGCAGCGTGCTTTGCGTACTGAAGCCATTGTAGAGTTTGTCGC
CAGCGGATCCCGCCTCCGAATCTTTGTACCGAAGGACAGTTGCCTGGTAA
CATTCCTGCTTGCTGGGATTTCATGTCCGCGTTCCTCTCGTCCAGCGCTT
AATGGCGTTCCTGCCCAAGAGGGGGAACCATTTGGCGACGAGGCTTTGAC
CTTTACCAGGGAGCGTGTCTTGCAACGCGACGTTTCTGTTCATATCGATA
CCACCGACAAGGCAGGATCTTCAGTGATTGGTTGGCTCTGGACGGACAGC
GGCGCCAACTTGTCAGTTGCTCTTGTCGAAGAGGGTCTTGCTGAAGTGCA
CTTTAGTGCTGAAAAATCTGAATACTACCGCCAGTTGAAGATTGCTGAAG
ACCGTGCCAAGGCCGCCAAAAAGAACATCTGGACAAACTACGTAGAAGAA
GTGCCTAAAGAAAAAACTGTCACCGAGGAAGAAAAGGAGGACAAGGTAGT
GGCGGAGCGTAAAGTCAACTACGAAAACGTTATTGTCACTGAGATCACCG
AAACTCTGACATTCTTCGCGCAATCTGTGGAGAGCGGATCCAAGCTAGAG
TCGCTTATGAGCAAACTTCACGCCGATTTCCAGTCCAACCCACCCATCGC
TGGATCGTACACGCCAAAGCGTGGTGACCTGGTGGCCGCTCAGTTTACAC
TTGATAATCAGTGGTATCGTGCCAAGGTGGAACGCGTGCAGGGCAGTAAT
GCTACAGTCCTGTACATCGATTATGGAAACAAGGAGACACTTCCGACCAA
CCGTTTGGCAGCCCTGCCACCAGCCTTCAGCAGCGAAAAGCCCTACGCTA
CGGAGTATGCTTTGGCCTTAGTCGCCCTGCCAACTGACAACGAAGATAAG
GAAGAAGCCTTGCGTGCCTTTTCCGAAGACGTTTTGAACCATAAGGTTCA
ACTCAATGTCGAGCTAAAGGTGACTGGGTCGCCGAACTTGGCCACTCTTC
GCGATCCAACTACTAAAGTCGATTTTGGAAAGCAGCTTGTAGCCGAGGGC
CTTGTTCTGGCCGAACAGCGTGGAGAGCGGAAGCTCAAGGAACTAGTGGA
CCAGTACAAAGCCGCGCAGGAAGCAGCTCGGGTCGCGCATCTGGCCATCT
GGAAGTACGGTGACATAACGCAAGATGATGCGCCCGAGTTCCGCTAAAAG
CTTTCTAGACCAT
BS15524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 2781 | CG7008-PB | 1..2781 | 17..2797 | 13905 | 100 | Plus |
| Tudor-SN-RA | 2781 | CG7008-PA | 1..2781 | 17..2797 | 13905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 3411 | CG7008-RB | 171..2954 | 17..2800 | 13920 | 100 | Plus |
| Tudor-SN-RA | 3159 | CG7008-RA | 171..2954 | 17..2800 | 13920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 260311..261749 | 2386..948 | 7195 | 100 | Minus |
| 3L | 28110227 | 3L | 261977..262821 | 951..107 | 4225 | 100 | Minus |
| 3L | 28110227 | 3L | 259500..259915 | 2800..2385 | 2080 | 100 | Minus |
| 3L | 28110227 | 3L | 264116..264210 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:57:34 has no hits.
BS15524.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-14 10:00:51 Download gff for
BS15524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 169..2947 | 17..2795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:56 Download gff for
BS15524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 171..2949 | 17..2795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:01 Download gff for
BS15524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 171..2949 | 17..2795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:01 Download gff for
BS15524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 259505..259913 | 2387..2795 | 100 | <- | Minus |
| 3L | 260311..261746 | 951..2386 | 100 | <- | Minus |
| 3L | 261978..262818 | 110..950 | 100 | <- | Minus |
| 3L | 264118..264210 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:56 Download gff for
BS15524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 259505..259913 | 2387..2795 | 100 | <- | Minus |
| arm_3L | 260311..261746 | 951..2386 | 100 | <- | Minus |
| arm_3L | 261978..262818 | 110..950 | 100 | <- | Minus |
| arm_3L | 264118..264210 | 17..109 | 100 | | Minus |
BS15524.pep Sequence
Translation from 16 to 2796
> BS15524.pep
MATAANTATAAGAAKDAPPAPTKSLSGIVKQVLSGDTVVIRATKGAPPPE
KQITFSHVLAPKLARRPGAGGDETKDEPWAWESREFLRKKLIGVEVTFTF
DKPANSNREYGFVWIGKDKETGENVVESIVREGLVSVRREGRPTAEQQTL
IELEDQARAAGRGKWSPTASAADKVRNIKWSHENPAHLVDIYGGNPVKAI
IEHVRDGSTVRAFLLPDFHYITLMISGIRCPGVKLDADGKPDLSVKVPFA
DEARYYVETRLLQRDVEIRLESVNNSNFIGTILYPKGNIAESLLREGLAK
CVDWSMAVMKTGTDKLRAAERFAKEKRLRQWQDYQAKTPAFNSKEKDFSG
TVVEVFNGDAINVRLSNGQVKKVFFSSIRPPRDQRAVVGTDGEEIVKAPP
RGKNYRPLYEIPHMFDAREFLRKKLINKKVQCNLDYISPPRENFPEKYCY
TVSIGGQNVAEAMVAKGLATCVRYRQDDDQRSSAYDQLIAAEQQAIKGLK
GLHAKKDNATLRVNDLTVDHSRIKVQYLPSWQRALRTEAIVEFVASGSRL
RIFVPKDSCLVTFLLAGISCPRSSRPALNGVPAQEGEPFGDEALTFTRER
VLQRDVSVHIDTTDKAGSSVIGWLWTDSGANLSVALVEEGLAEVHFSAEK
SEYYRQLKIAEDRAKAAKKNIWTNYVEEVPKEKTVTEEEKEDKVVAERKV
NYENVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTP
KRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAAL
PPAFSSEKPYATEYALALVALPTDNEDKEEALRAFSEDVLNHKVQLNVEL
KVTGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAA
QEAARVAHLAIWKYGDITQDDAPEFR*
BS15524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-PB | 926 | CG7008-PB | 1..926 | 1..926 | 4758 | 100 | Plus |
| Tudor-SN-PA | 926 | CG7008-PA | 1..926 | 1..926 | 4758 | 100 | Plus |
