Clone Sequence Records
BS15539.complete Sequence
2546 bp assembled on 2009-12-07
GenBank Submission: KX802202
> BS15539.complete
GAAGTTATCAGTCGACATGGGAAACACGGACTCCAAGTTGAACTTTCGCA
AGGCGATTGTGCAGCTGACGCAGAAGAACCAGAAGATCGACCCCAGCGAC
GAGCAGTTCTGGGAGCAGTTCTGGCAGGGCCACCAGACGACGCTGGAGGA
TGTGTTCGCGCTGGTCACCTCGAGCGAGATTCGCCAGATACGGAACGAGA
ATCCAGCCAACCTGGCCACCTTATGCTACAAGGCGGTGGAAAAGCTTGCC
CAGGCGGTAGACAGCAGTTGTCGCACGCAGGCGGAGCAGCAGTGCGTTTT
GAACTGCGTGCGGCTGCTCGTCCGGTGTCTGCCGTACATTTTCGAGGACG
AAAAGTGGCGCGACTTCTTCTGGAGCAGCCTGCCATCGCAGGACAAGACC
ATGCCGTTGGCTCAGTCACTGCTCAATGCCACCTGCGACCTTCTTTTCTG
TCCCGACTTCACGGTTACGGCCACGCGGCGTGCGGGCCCCGAGAAGGCCG
AGGAGTTGGCGAACATCGATAGCTGCGAGTACATTTGGGAAGCGGGCGTG
GGTTTCGCCCAGTCACCGCCCCACAACGCCCACATGGAGCGCAGGCGCAC
GGAGTTGCTGAAGCTATTACTCACCTGCTTCTCGGAGCCCATGTACCGAT
CGCCGCAGCAGTCCGAGGAGCCCAACAAGTGGATAGCATATTTCACCTCG
GCCGACAATCGCCATGCCCTGCCGCTGTTCACCTCGTTTCTGAACACCGT
GTGCTCCTACGATCCGGTGGGCTTCGGCGTGCCCTACAATCACCTGCTGT
TTGCAGACACCACAGAGCCCCTGGTGGAAGCGTGCCTTCAACTGCTCATT
GTCACCTTGGATCACGATATGGTGGTGCAGCAGCAACTCACACAACCCGG
ACAGGCGTCCTACGACGAGGGCAATTGCGGCGACAACTTGTTCATTAACT
ATCTTTCGAGGGTTCACCGCGACGAGGACTTTCACTTTGTGCTCAAGGGC
ATAACCAGGCTGCTGAACAACCCACTGGTCCAGAACTATTTGCCCAATTC
CACAAAGCGACTTCATTGCCACCAGGAGCTGCTTATTTTGTTTTGGAAAA
TATGCGACTACAACAAAAAGTTTCTGTATTTTGTGCTAAAGAGCTCCGAT
GTTCTGGACATCCTGATTCCCATTCTGTATCACCTAAACTACTCCCGAGC
GGATCAATCTCGAGTGGGCTTGATGCATATTGGAGTATTCATACTGTTGC
TCCTATCGGGTGAGCGAAACTTTGGGGTTCGGCTTAACAAAGCATACTCC
GCCACGGTGCCCATGGATATACCTGTGTTTACTGGAACCCATGCGGACTT
ACTCATCACTGTGTTCCACAAAATAATAGCCACTGGCCACCAGAGGCTGC
AGCCGCTTTTCGATTGTCTGCTGACCATTCTGGTAAATGTCTCACCATAT
CTGAAAACCCTCTCGATGGTGGCTAGTGTAAAGATGTTGCATCTCCTGGA
GGCTTTTAGCACACCCTGGTTTCTGCTATCGGCACCCAGCAATCATCATT
TGGTGTTTTTCCTGCTGGAGATCTTCAATAACATTATACAGTATCAGTTC
GATGGCAACTCGAATCTAGTCTACACCATAATTCGAAAGCGTCATGTGTT
CCATGCCATGGCAAATCTCCCGACCGATATGGCTGGCATAGCCAAGTGCC
TGAGTGGCCGTAAAACAGGTGGAAAGTTTAACTTGCCGCGGGTACCACAG
CGAAGAACGCCAGCTGTGTCCCAGGAACTGCCCTCGGCCCACGTGCCAGA
AGAGTACAACGAAGAAGACGAGGATGAGGACGAGGAGGAGATAATTAATG
AAGAGCCCAAGGCGGAAGAGGATCTCGAATCGGAGACAGAGTCTCATGAG
CGATCTCAGGCGGGGGAGCTGCAGTCGGACGTTCTCACGGCGCAGCCAGC
CGAGCCAGGAACACTGAAAACGTCCTTGTTGGACACCCCGGGCATTACTC
AGATGACGGAGCGGGAGCAGGCGCATCCAAATGACAAGCCTCAGGTGGAG
GATTCTACAGACATTGTGCCCTACGACAGATCAGCCGCTTCGACGCCAAC
TGACGAACGCAAGTCCACCTCACCCACGGAATTGTCCCGCTTGTCGGTGG
CCCACAGGGCCAGCATTCGCATGGTGCCTGGCGAGAGCGATCGTTGGACG
CCCACGCCCGAGTGGATCGTCTCCTGGCGCTCCAAGCTGCCGCTGCAGAC
CATCATGCGACTGCTTCAGGTCCTAGTGCCCCAGGTGGAGAAGATCTGCA
TTGACAAAGGACTGACCGACGAGTCGGAGATCCTCAAGTTTCTGCAACAC
GGAACGTTAGTGGGACTGCTCCCAGTGCCGCATCCCATTCTCATCCGAAA
GTACCAGGCCAATGCGGGCACAACGGCATGGTTCCGCACCTACATCTGGG
GTGTCATCTACCTGCGCAACGTGGAGCCTGCCATCTGGTACGATACGGAG
GTCAAGCTCTTCGAGATTCAGCGCGTCTAGAAGCTTTCTAGACCAT
BS15539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-RB | 2514 | CG8841-PB | 1..2514 | 17..2530 | 12570 | 100 | Plus |
| CG8841-RA | 2514 | CG8841-PA | 1..2514 | 17..2530 | 12570 | 100 | Plus |
| CG8841-RC | 2514 | CG8841-PC | 1..2514 | 17..2530 | 12570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-RB | 3539 | CG8841-RB | 216..2729 | 17..2530 | 12570 | 100 | Plus |
| CG8841-RA | 3460 | CG8841-RA | 137..2650 | 17..2530 | 12570 | 100 | Plus |
| CG8841-RC | 3530 | CG8841-RC | 207..2720 | 17..2530 | 12570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12323317..12324588 | 2530..1259 | 6360 | 100 | Minus |
| 2R | 25286936 | 2R | 12324653..12325900 | 1264..17 | 6240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:52:33 has no hits.
BS15539.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:35 Download gff for
BS15539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RB | 193..2706 | 17..2530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:13 Download gff for
BS15539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 207..2720 | 17..2530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:26 Download gff for
BS15539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RB | 193..2706 | 17..2530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:56 Download gff for
BS15539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 207..2720 | 17..2530 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:56 Download gff for
BS15539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12323317..12324587 | 1260..2530 | 100 | <- | Minus |
| 2R | 12324658..12325900 | 17..1259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:13 Download gff for
BS15539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8210822..8212092 | 1260..2530 | 100 | <- | Minus |
| arm_2R | 8212163..8213405 | 17..1259 | 100 | | Minus |
BS15539.3prime Sequence
773 bp (771 high quality bases) assembled on 2006-12-21
> BS15539.3prime
ATGGTCTAGAAAGCTTCTACACTCGCTGAATCTCGAAGAGCTTGACCTCC
GTATCGTACCAGATGGCAGGCTCCACGTTGCGCAGGTAGATGACACCCCA
GATGTAGGTGCGGAACCATGCCGTTGTGCCCGCATTGGCCTGGTACTTTC
GGATGAGAATGGGATGCGGCACTGGGAGCAGTCCCACTAACGTTCCGTGT
TGCAGAAACTTGAGGATCTCCGACTCGTCGGTCAGTCCTTTGTCAATGCA
GATCTTCTCCACCTGGGGCACTAGGACCTGAAGCAGTCGCATGATGGTCT
GCAGCGGCAGCTTGGAGCGCCAGGAGACGATCCACTCGGGCGTGGGCGTC
CAACGATCGCTCTCGCCAGGCACCATGCGAATGCTGGCCCTGTGGGCCAC
CGACAAGCGGGACAATTCCGTGGGTGAGGTGGACTTGCGTTCGTCAGTTG
GCGTCGAAGCGGCTGATCTGTCGTAGGGCACAATGTCTGTAGAATCCTCC
ACCTGAGGCTTGTCATTTGGATGCGCCTGCTCCCGCTCCGTCATCTGAGT
AATGCCCGGGGTGTCCAACAAGGACGTTTTCAGTGTTCCTGGCTCGGCTG
GCTGCGCCGTGAGAACGTCCGACTGCAGCTCCCCCGCCTGAGATCGCTCA
TGAGACTCTGTCTCCGATTCGAGATCCTCTTCCGCCTTGGGCTCTTCATT
AATTATCTCCTCCTCGTCCTCATCCTCGTCTTCTTCGTTGTACTCTTCTG
GCACGTGGGCCGAGGGCAGTTCC
BS15539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-PC | 2514 | CG8841-RC | 1758..2507 | 773..24 | 3750 | 100 | Minus |
| CG8841-PA | 2514 | CG8841-RA | 1758..2507 | 773..24 | 3750 | 100 | Minus |
| CG8841-PB | 2514 | CG8841-RB | 1758..2507 | 773..24 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-RB | 3539 | CG8841-RB | 1973..2729 | 773..17 | 3755 | 99.7 | Minus |
| CG8841-RA | 3460 | CG8841-RA | 1894..2650 | 773..17 | 3755 | 99.7 | Minus |
| CG8841-RC | 3530 | CG8841-RC | 1964..2720 | 773..17 | 3755 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 00:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12323317..12324073 | 17..773 | 3755 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 00:02:51 has no hits.
BS15539.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:29:37 Download gff for
BS15539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-PB | 1758..2514 | 17..773 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:07:29 Download gff for
BS15539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-PB | 1758..2514 | 17..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:34:19 Download gff for
BS15539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 1964..2720 | 17..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:34:46 Download gff for
BS15539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 1964..2720 | 17..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:34:46 Download gff for
BS15539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12323317..12324073 | 17..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:34:19 Download gff for
BS15539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8210822..8211578 | 17..773 | 99 | | Plus |
BS15539.5prime Sequence
891 bp (865 high quality bases) assembled on 2006-12-21
> BS15539.5prime
GAAGTTATCCGTCGACATGGGAAACACGGACTCCAAGTTGAACTTTCGCA
AGGCGATTGTGCAGCTGACGCAGAAGAACCAGAAGATCGACCCCAGCGAC
GAGCAGTTCTGGGAGCAGTTCTGGCAGGGCCACCAGACGACGCTGGAGGA
TGTGTTCGCGCTGGTCACCTCGAGCGAGATTCGCCAGATACGGAACGAGA
ATCCAGCCAACCTGGCCACCTTATGCTACAAGGCGGTGGAAAAGCTTGCC
CAGGCGGTAGACAGCAGTTGTCGCACGCAGGCGGAGCAGCAGTGCGTTTT
GAACTGCGTGCGGCTGCTCGTCCGGTGTCTGCCGTACATTTTCGAGGACG
AAAAGTGGCGCGACTTCTTCTGGAGCAGCCTGCCATCGCAGGACAAGACC
ATGCCGTTGGCTCAGTCACTGCTCAATGCCACCTGCGACCTTCTTTTCTG
TCCCGACTTCACGGTTACGGCCACGCGGCGTGCGGGCCCCGAGAAGGCCG
AGGAGTTGGCGAACATCGATAGCTGCGAGTACATTTGGGAAGCGGGCGTG
GGTTTCGCCCAGTCACCGCCCCACAACGCCCACATGGAGCGCAGGCGCAC
GGAGTTGCTGAAGCTATTACTCACCTGCTTCTCGGAGCCCATGTACCGAT
CGCCGCAGCAGTCCGAGGAGCCCAACAAGTGGATAGCATATTTCACCTCG
GCCGACAATCGCCATGCCCTGCCGCTGTTCACCTCGTTTCTGAACACCGT
GTGCTCCTACGATCCGGTGGGCTTCGGCGTGCCCTACAATCACCTGCTGT
TTGCAGACACCACAGAGCCCCTGGTGGAAGCGTGCCCTTCACTGCTCATT
GTCACCTTGGATCACGATATGGTGGTGCAGCAGCAACTCAC
BS15539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-PC | 2514 | CG8841-RC | 1..820 | 17..836 | 4100 | 100 | Plus |
| CG8841-PA | 2514 | CG8841-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
| CG8841-PB | 2514 | CG8841-RB | 1..820 | 17..836 | 4100 | 100 | Plus |
| CG8841-PC | 2514 | CG8841-RC | 825..875 | 841..891 | 255 | 100 | Plus |
| CG8841-PA | 2514 | CG8841-RA | 825..875 | 841..891 | 255 | 100 | Plus |
| CG8841-PB | 2514 | CG8841-RB | 825..875 | 841..891 | 255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-RB | 3539 | CG8841-RB | 216..1090 | 17..891 | 4330 | 99.8 | Plus |
| CG8841-RA | 3460 | CG8841-RA | 137..1011 | 17..891 | 4330 | 99.8 | Plus |
| CG8841-RC | 3530 | CG8841-RC | 207..1081 | 17..891 | 4330 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 00:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12325026..12325900 | 891..17 | 4330 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-06 00:02:35 has no hits.
BS15539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:29:39 Download gff for
BS15539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-PB | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:07:31 Download gff for
BS15539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-PB | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:34:17 Download gff for
BS15539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 198..1081 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:34:45 Download gff for
BS15539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 198..1081 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:34:45 Download gff for
BS15539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12325026..12325909 | 9..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:34:17 Download gff for
BS15539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8212531..8213414 | 9..891 | 99 | | Minus |
BS15539.pep Sequence
Translation from 16 to 2529
> BS15539.pep
MGNTDSKLNFRKAIVQLTQKNQKIDPSDEQFWEQFWQGHQTTLEDVFALV
TSSEIRQIRNENPANLATLCYKAVEKLAQAVDSSCRTQAEQQCVLNCVRL
LVRCLPYIFEDEKWRDFFWSSLPSQDKTMPLAQSLLNATCDLLFCPDFTV
TATRRAGPEKAEELANIDSCEYIWEAGVGFAQSPPHNAHMERRRTELLKL
LLTCFSEPMYRSPQQSEEPNKWIAYFTSADNRHALPLFTSFLNTVCSYDP
VGFGVPYNHLLFADTTEPLVEACLQLLIVTLDHDMVVQQQLTQPGQASYD
EGNCGDNLFINYLSRVHRDEDFHFVLKGITRLLNNPLVQNYLPNSTKRLH
CHQELLILFWKICDYNKKFLYFVLKSSDVLDILIPILYHLNYSRADQSRV
GLMHIGVFILLLLSGERNFGVRLNKAYSATVPMDIPVFTGTHADLLITVF
HKIIATGHQRLQPLFDCLLTILVNVSPYLKTLSMVASVKMLHLLEAFSTP
WFLLSAPSNHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRKRHVFHAMAN
LPTDMAGIAKCLSGRKTGGKFNLPRVPQRRTPAVSQELPSAHVPEEYNEE
DEDEDEEEIINEEPKAEEDLESETESHERSQAGELQSDVLTAQPAEPGTL
KTSLLDTPGITQMTEREQAHPNDKPQVEDSTDIVPYDRSAASTPTDERKS
TSPTELSRLSVAHRASIRMVPGESDRWTPTPEWIVSWRSKLPLQTIMRLL
QVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPHPILIRKYQANA
GTTAWFRTYIWGVIYLRNVEPAIWYDTEVKLFEIQRV*
BS15539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-PB | 837 | CG8841-PB | 1..837 | 1..837 | 4411 | 100 | Plus |
| CG8841-PA | 837 | CG8841-PA | 1..837 | 1..837 | 4411 | 100 | Plus |
| CG8841-PC | 837 | CG8841-PC | 1..837 | 1..837 | 4411 | 100 | Plus |
