Clone BS15549 Report

Search the DGRC for BS15549

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:155
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG32536-RA
Protein status:BS15549.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15549.3prime Sequence

690 bp (690 high quality bases) assembled on 2006-12-21

> BS15549.3prime
ATGGNCTAGAAAGCTTCTCCCTCGCTCGCTGTCCGGCGGTCAGTCGCTGA
GCGCCCACAGTGGGCGGGGCCGGGCGGACGGGCGGCTGTCGCTGATGGCG
CAACTCACGACGCTTCTCACGCAGAATGTGCTTGGTCTGGGAGGTGTCCA
GCTCCTCCCAGCCGCCGGCATTATCATCCACCCAGTCCTCGAGATCGGCA
TTTACGCTAATTGGCACCAAGTCCTGGGCCTGCAGTCTTGAAAAGTCACT
TTGTTGGCTGGTCGCCGCACTCGTGGATGGATCCTCCAGGTAGAACTTCA
TCTGCGGCTTGATGGTGGGCGTCAGCTCACTGAAGAAGTCCGGTTCGGGT
TCCTCCTTGGGCGGAGTGGGTGGCTGGGCCATTCGCTGGCGGTACTGCTC
GATGTGCTCCTCCACGGTGCGCGGACTGTCGTCCCAGGAGTTCCAGTCCC
GCTCGCGCGCCCCCGCTGTCCTGCCACCGCCGGCCTGGCCAGCGGAGGTG
GCGCCGGTGGCGGAGAAGTCGCCTCGCTCCACGATCACGTTGACCGCTTG
CAGTTGGTCGGCGGATCCGGTGGCGGAGCCGCTGTGGCTGAGCTTGCGGC
GCCTGGAGAAGCAGCACAAGGCACGCCGGCACAGCGTGATGATGCCCAGC
ACCAGCATCTTGATTTGCTGCAGCATGTCGACTGATAACT

BS15549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32536-PA 660 CG32536-RA 1..654 676..23 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32536-RA 887 CG32536-RA 75..728 676..23 3270 100 Minus
CG32537-RA 2442 CG32537-RA 323..628 328..23 1530 100 Minus
CG32537-RA 2442 CG32537-RA 1..64 391..328 320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19276476..19276824 328..676 1745 100 Plus
X 23542271 X 19275163..19275339 23..199 885 100 Plus
X 23542271 X 19275399..19275528 199..328 650 100 Plus
Blast to na_te.dros performed on 2015-01-30 12:27:22 has no hits.

BS15549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:29:53 Download gff for BS15549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32536-PA 1..660 17..676 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:07:50 Download gff for BS15549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32536-PA 1..660 17..676 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:48 Download gff for BS15549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 59..728 23..690 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:01:18 Download gff for BS15549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 59..728 23..690 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:01:18 Download gff for BS15549.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19275163..19275339 23..199 100 <- Plus
X 19275400..19275528 200..328 100 <- Plus
X 19276477..19276840 329..690 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:48 Download gff for BS15549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19169196..19169372 23..199 100 <- Plus
arm_X 19169433..19169561 200..328 100 <- Plus
arm_X 19170510..19170873 329..690 98   Plus

BS15549.5prime Sequence

690 bp (690 high quality bases) assembled on 2006-12-21

> BS15549.5prime
GAAGTTATCCTTCGACATGCTGCAGCAAATCAAGATGCTGGTGCTGGGCA
TCATCACGCTGTGCCGGCGTGCCTTGTGCTGCTTCTCCAGGCGCCGCAAG
CTCAGCCACAGCGGCTCCGCCACCGGATCCGCCGACCAACTGCAAGCGGT
CAACGTGATCGTGGAGCGAGGCGACTTCTCCGCCACCGGCGCCACCTCCG
CTGGCCAGGCCGGCGGTGGCAGGACAGCGGGGGCGCGCGAGCGGGACTGG
AACTCCTGGGACGACAGTCCGCGCACCGTGGAGGAGCACATCGAGCAGTA
CCGCCAGCGAATGGCCCAGCCACCCACTCCGCCCAAGGAGGAACCCGAAC
CGGACTTCTTCAGTGAGCTGACGCCCACCATCAAGCCGCAGATGAAGTTC
TACCTGGAGGATCCATCCACGAGTGCGGCGACCAGCCAACAAAGTGACTT
TTCAAGACTGCAGGCCCAGGACTTGGTGCCAATTAGCGTAAATGCCGATC
TCGAGGACTGGGTGGATGATAATGCCGGCGGCTGGGAGGAGCTGGACACC
TCCCAGACCAAGCACATTCTGCGTGAGAAGCGTCGTGAGTTGCGCCATCA
GCGACAGCCGCCCGTCCGCCCGGCCCCGCCCACTGTGGGCGCTCAGCGAC
TGACCGCCGGACAGCGAGCGGCGTAGAAGCTTTCTAGACC

BS15549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32536-PA 660 CG32536-RA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32536-RA 887 CG32536-RA 75..734 17..676 3300 100 Plus
CG32537-RA 2442 CG32537-RA 323..634 365..676 1560 100 Plus
CG32537-RA 2442 CG32537-RA 1..64 302..365 320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19276476..19276824 365..17 1745 100 Minus
X 23542271 X 19275157..19275339 676..494 915 100 Minus
X 23542271 X 19275399..19275528 494..365 650 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:06:45 has no hits.

BS15549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:29:54 Download gff for BS15549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32536-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:07:52 Download gff for BS15549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32536-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:32:07 Download gff for BS15549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 71..734 14..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:16 Download gff for BS15549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 71..734 14..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:16 Download gff for BS15549.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19276477..19276828 14..364 99   Minus
X 19275157..19275339 494..676 100 <- Minus
X 19275400..19275528 365..493 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:32:07 Download gff for BS15549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19169190..19169372 494..676 100 <- Minus
arm_X 19169433..19169561 365..493 100 <- Minus
arm_X 19170510..19170861 14..364 99   Minus

BS15549.complete Sequence

692 bp assembled on 2006-11-29

GenBank Submission: FJ637939

> BS15549.complete
GAAGTTATCAGTCGACATGCTGCAGCAAATCAAGATGCTGGTGCTGGGCA
TCATCACGCTGTGCCGGCGTGCCTTGTGCTGCTTCTCCAGGCGCCGCAAG
CTCAGCCACAGCGGCTCCGCCACCGGATCCGCCGACCAACTGCAAGCGGT
CAACGTGATCGTGGAGCGAGGCGACTTCTCCGCCACCGGCGCCACCTCCG
CTGGCCAGGCCGGCGGTGGCAGGACAGCGGGGGCGCGCGAGCGGGACTGG
AACTCCTGGGACGACAGTCCGCGCACCGTGGAGGAGCACATCGAGCAGTA
CCGCCAGCGAATGGCCCAGCCACCCACTCCGCCCAAGGAGGAACCCGAAC
CGGACTTCTTCAGTGAGCTGACGCCCACCATCAAGCCGCAGATGAAGTTC
TACCTGGAGGATCCATCCACGAGTGCGGCGACCAGCCAACAAAGTGACTT
TTCAAGACTGCAGGCCCAGGACTTGGTGCCAATTAGCGTAAATGCCGATC
TCGAGGACTGGGTGGATGATAATGCCGGCGGCTGGGAGGAGCTGGACACC
TCCCAGACCAAGCACATTCTGCGTGAGAAGCGTCGTGAGTTGCGCCATCA
GCGACAGCCGCCCGTCCGCCCGGCCCCGCCCACTGTGGGCGCTCAGCGAC
TGACCGCCGGACAGCGAGCGGCGTAGAAGCTTTCTAGACCAT

BS15549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32536-RA 660 CG32536-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32536-RA 887 CG32536-RA 75..734 17..676 3300 100 Plus
CG32537-RA 2442 CG32537-RA 323..634 365..676 1560 100 Plus
CG32537-RA 2442 CG32537-RA 1..64 302..365 320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19276476..19276824 365..17 1745 100 Minus
X 23542271 X 19275157..19275339 676..494 915 100 Minus
X 23542271 X 19275399..19275528 494..365 650 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:49:55 has no hits.

BS15549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:33 Download gff for BS15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:02 Download gff for BS15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 33..708 3..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:20 Download gff for BS15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 75..734 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:33 Download gff for BS15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 33..708 3..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:12 Download gff for BS15549.complete
Subject Subject Range Query Range Percent Splice Strand
CG32536-RA 75..734 17..676 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:12 Download gff for BS15549.complete
Subject Subject Range Query Range Percent Splice Strand
X 19275157..19275339 494..676 100 <- Minus
X 19275400..19275528 365..493 100 <- Minus
X 19276477..19276824 17..364 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:20 Download gff for BS15549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19169190..19169372 494..676 100 <- Minus
arm_X 19169433..19169561 365..493 100 <- Minus
arm_X 19170510..19170857 17..364 100   Minus

BS15549.pep Sequence

Translation from 16 to 675

> BS15549.pep
MLQQIKMLVLGIITLCRRALCCFSRRRKLSHSGSATGSADQLQAVNVIVE
RGDFSATGATSAGQAGGGRTAGARERDWNSWDDSPRTVEEHIEQYRQRMA
QPPTPPKEEPEPDFFSELTPTIKPQMKFYLEDPSTSAATSQQSDFSRLQA
QDLVPISVNADLEDWVDDNAGGWEELDTSQTKHILREKRRELRHQRQPPV
RPAPPTVGAQRLTAGQRAA*

BS15549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32536-PA 219 CG32536-PA 1..219 1..219 1145 100 Plus