Clone Sequence Records
BS15549.3prime Sequence
690 bp (690 high quality bases) assembled on 2006-12-21
> BS15549.3prime
ATGGNCTAGAAAGCTTCTCCCTCGCTCGCTGTCCGGCGGTCAGTCGCTGA
GCGCCCACAGTGGGCGGGGCCGGGCGGACGGGCGGCTGTCGCTGATGGCG
CAACTCACGACGCTTCTCACGCAGAATGTGCTTGGTCTGGGAGGTGTCCA
GCTCCTCCCAGCCGCCGGCATTATCATCCACCCAGTCCTCGAGATCGGCA
TTTACGCTAATTGGCACCAAGTCCTGGGCCTGCAGTCTTGAAAAGTCACT
TTGTTGGCTGGTCGCCGCACTCGTGGATGGATCCTCCAGGTAGAACTTCA
TCTGCGGCTTGATGGTGGGCGTCAGCTCACTGAAGAAGTCCGGTTCGGGT
TCCTCCTTGGGCGGAGTGGGTGGCTGGGCCATTCGCTGGCGGTACTGCTC
GATGTGCTCCTCCACGGTGCGCGGACTGTCGTCCCAGGAGTTCCAGTCCC
GCTCGCGCGCCCCCGCTGTCCTGCCACCGCCGGCCTGGCCAGCGGAGGTG
GCGCCGGTGGCGGAGAAGTCGCCTCGCTCCACGATCACGTTGACCGCTTG
CAGTTGGTCGGCGGATCCGGTGGCGGAGCCGCTGTGGCTGAGCTTGCGGC
GCCTGGAGAAGCAGCACAAGGCACGCCGGCACAGCGTGATGATGCCCAGC
ACCAGCATCTTGATTTGCTGCAGCATGTCGACTGATAACT
BS15549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-PA | 660 | CG32536-RA | 1..654 | 676..23 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-RA | 887 | CG32536-RA | 75..728 | 676..23 | 3270 | 100 | Minus |
CG32537-RA | 2442 | CG32537-RA | 323..628 | 328..23 | 1530 | 100 | Minus |
CG32537-RA | 2442 | CG32537-RA | 1..64 | 391..328 | 320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19276476..19276824 | 328..676 | 1745 | 100 | Plus |
X | 23542271 | X | 19275163..19275339 | 23..199 | 885 | 100 | Plus |
X | 23542271 | X | 19275399..19275528 | 199..328 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 12:27:22 has no hits.
BS15549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:29:53 Download gff for
BS15549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-PA | 1..660 | 17..676 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:07:50 Download gff for
BS15549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-PA | 1..660 | 17..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:48 Download gff for
BS15549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 59..728 | 23..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:01:18 Download gff for
BS15549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 59..728 | 23..690 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:01:18 Download gff for
BS15549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19275163..19275339 | 23..199 | 100 | <- | Plus |
X | 19275400..19275528 | 200..328 | 100 | <- | Plus |
X | 19276477..19276840 | 329..690 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:48 Download gff for
BS15549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19169196..19169372 | 23..199 | 100 | <- | Plus |
arm_X | 19169433..19169561 | 200..328 | 100 | <- | Plus |
arm_X | 19170510..19170873 | 329..690 | 98 | | Plus |
BS15549.5prime Sequence
690 bp (690 high quality bases) assembled on 2006-12-21
> BS15549.5prime
GAAGTTATCCTTCGACATGCTGCAGCAAATCAAGATGCTGGTGCTGGGCA
TCATCACGCTGTGCCGGCGTGCCTTGTGCTGCTTCTCCAGGCGCCGCAAG
CTCAGCCACAGCGGCTCCGCCACCGGATCCGCCGACCAACTGCAAGCGGT
CAACGTGATCGTGGAGCGAGGCGACTTCTCCGCCACCGGCGCCACCTCCG
CTGGCCAGGCCGGCGGTGGCAGGACAGCGGGGGCGCGCGAGCGGGACTGG
AACTCCTGGGACGACAGTCCGCGCACCGTGGAGGAGCACATCGAGCAGTA
CCGCCAGCGAATGGCCCAGCCACCCACTCCGCCCAAGGAGGAACCCGAAC
CGGACTTCTTCAGTGAGCTGACGCCCACCATCAAGCCGCAGATGAAGTTC
TACCTGGAGGATCCATCCACGAGTGCGGCGACCAGCCAACAAAGTGACTT
TTCAAGACTGCAGGCCCAGGACTTGGTGCCAATTAGCGTAAATGCCGATC
TCGAGGACTGGGTGGATGATAATGCCGGCGGCTGGGAGGAGCTGGACACC
TCCCAGACCAAGCACATTCTGCGTGAGAAGCGTCGTGAGTTGCGCCATCA
GCGACAGCCGCCCGTCCGCCCGGCCCCGCCCACTGTGGGCGCTCAGCGAC
TGACCGCCGGACAGCGAGCGGCGTAGAAGCTTTCTAGACC
BS15549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-PA | 660 | CG32536-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-RA | 887 | CG32536-RA | 75..734 | 17..676 | 3300 | 100 | Plus |
CG32537-RA | 2442 | CG32537-RA | 323..634 | 365..676 | 1560 | 100 | Plus |
CG32537-RA | 2442 | CG32537-RA | 1..64 | 302..365 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19276476..19276824 | 365..17 | 1745 | 100 | Minus |
X | 23542271 | X | 19275157..19275339 | 676..494 | 915 | 100 | Minus |
X | 23542271 | X | 19275399..19275528 | 494..365 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:06:45 has no hits.
BS15549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:29:54 Download gff for
BS15549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:07:52 Download gff for
BS15549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:32:07 Download gff for
BS15549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 71..734 | 14..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:16 Download gff for
BS15549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 71..734 | 14..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:16 Download gff for
BS15549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19276477..19276828 | 14..364 | 99 | | Minus |
X | 19275157..19275339 | 494..676 | 100 | <- | Minus |
X | 19275400..19275528 | 365..493 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:32:07 Download gff for
BS15549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19169190..19169372 | 494..676 | 100 | <- | Minus |
arm_X | 19169433..19169561 | 365..493 | 100 | <- | Minus |
arm_X | 19170510..19170861 | 14..364 | 99 | | Minus |
BS15549.complete Sequence
692 bp assembled on 2006-11-29
GenBank Submission: FJ637939
> BS15549.complete
GAAGTTATCAGTCGACATGCTGCAGCAAATCAAGATGCTGGTGCTGGGCA
TCATCACGCTGTGCCGGCGTGCCTTGTGCTGCTTCTCCAGGCGCCGCAAG
CTCAGCCACAGCGGCTCCGCCACCGGATCCGCCGACCAACTGCAAGCGGT
CAACGTGATCGTGGAGCGAGGCGACTTCTCCGCCACCGGCGCCACCTCCG
CTGGCCAGGCCGGCGGTGGCAGGACAGCGGGGGCGCGCGAGCGGGACTGG
AACTCCTGGGACGACAGTCCGCGCACCGTGGAGGAGCACATCGAGCAGTA
CCGCCAGCGAATGGCCCAGCCACCCACTCCGCCCAAGGAGGAACCCGAAC
CGGACTTCTTCAGTGAGCTGACGCCCACCATCAAGCCGCAGATGAAGTTC
TACCTGGAGGATCCATCCACGAGTGCGGCGACCAGCCAACAAAGTGACTT
TTCAAGACTGCAGGCCCAGGACTTGGTGCCAATTAGCGTAAATGCCGATC
TCGAGGACTGGGTGGATGATAATGCCGGCGGCTGGGAGGAGCTGGACACC
TCCCAGACCAAGCACATTCTGCGTGAGAAGCGTCGTGAGTTGCGCCATCA
GCGACAGCCGCCCGTCCGCCCGGCCCCGCCCACTGTGGGCGCTCAGCGAC
TGACCGCCGGACAGCGAGCGGCGTAGAAGCTTTCTAGACCAT
BS15549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-RA | 660 | CG32536-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-RA | 887 | CG32536-RA | 75..734 | 17..676 | 3300 | 100 | Plus |
CG32537-RA | 2442 | CG32537-RA | 323..634 | 365..676 | 1560 | 100 | Plus |
CG32537-RA | 2442 | CG32537-RA | 1..64 | 302..365 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19276476..19276824 | 365..17 | 1745 | 100 | Minus |
X | 23542271 | X | 19275157..19275339 | 676..494 | 915 | 100 | Minus |
X | 23542271 | X | 19275399..19275528 | 494..365 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:49:55 has no hits.
BS15549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:33 Download gff for
BS15549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:02 Download gff for
BS15549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 33..708 | 3..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:20 Download gff for
BS15549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 75..734 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:33 Download gff for
BS15549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 33..708 | 3..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:12 Download gff for
BS15549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 75..734 | 17..676 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:12 Download gff for
BS15549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19275157..19275339 | 494..676 | 100 | <- | Minus |
X | 19275400..19275528 | 365..493 | 100 | <- | Minus |
X | 19276477..19276824 | 17..364 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:20 Download gff for
BS15549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19169190..19169372 | 494..676 | 100 | <- | Minus |
arm_X | 19169433..19169561 | 365..493 | 100 | <- | Minus |
arm_X | 19170510..19170857 | 17..364 | 100 | | Minus |
BS15549.pep Sequence
Translation from 16 to 675
> BS15549.pep
MLQQIKMLVLGIITLCRRALCCFSRRRKLSHSGSATGSADQLQAVNVIVE
RGDFSATGATSAGQAGGGRTAGARERDWNSWDDSPRTVEEHIEQYRQRMA
QPPTPPKEEPEPDFFSELTPTIKPQMKFYLEDPSTSAATSQQSDFSRLQA
QDLVPISVNADLEDWVDDNAGGWEELDTSQTKHILREKRRELRHQRQPPV
RPAPPTVGAQRLTAGQRAA*
BS15549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-PA | 219 | CG32536-PA | 1..219 | 1..219 | 1145 | 100 | Plus |