Clone BS15555 Report

Search the DGRC for BS15555

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:155
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptSmurf-RA
Protein status:BS15555.pep: full length peptide match
Sequenced Size:3218

Clone Sequence Records

BS15555.complete Sequence

3218 bp assembled on 2009-12-07

GenBank Submission: KX804200

> BS15555.complete
GAAGTTATCAGTCCACATGAATAAATTGGATTACCCACGTCGCAATGGTA
CACACAAAGTTCGAATAACGATATTGTGTGCTAGAAACTTGGCCCGCAAG
GATTTATTTCGTCTACCCGATCCCTTTGCTAAGGTGCAGGTGGATGGAAC
TGGGCAGGTGTACTCGACGGAAATAAGCAAATCCTCTCTGGATCCAAAAT
GGAATGCACATTACGATTTGTTTTTGGGCATTGGGGATGCCATTACGATA
ACTGTGTGGAATCAGCGAAAGATACACAAGGGCAGTGGATTCCTGGGCTG
TGTGAGGATACCGGCGTTCAACATACAGAGCCTCAAAGGAGCTGGGTTTC
AACGCTTGGATCTGGGAAAACTGTCGCCGGATGACGATGAGCTTGTACGT
GGTCAAATCATCATTTCGTTGCTCTCGAAGGACGGTCCTAGTAGTGGTAA
TCCTCTGGCCATTGTAGGACCCAGTGGTGATGTCCGTGGACCGTCGGAAG
ATGACTCCTCGGAAGATAGTTTGCCAGAGGGTTGGGAGGAGCGGCGTACG
GACAACGGTCGAGTTTACTATGTGAACCATGCCACCAAATCGACGCAGTG
GGATCGACCAAGACAGCCAGGAGTAGTTGGATCCAGTCACGCCACTTCAC
CACAGCAACGGCACAACACGCACAATGGCAACAGCGGTGATCGACAAGCT
CCGGCTGGGCCAACCCGCTCTACAACTTGCACGAACCTGATGAATAACGG
TCATCGCAGCCGGGACTTGTCTGTGACGGCTTCAGATGAACGTAGACACT
CTACGGAAATCCTGTCCAGCGTGGGCAAGGAGAACACCAGCCCCACAACG
CCCGTTTCGGCCACGACAACGCCTGGCAAAAAAACATCCTCATCGAACTC
ATCCTCGGCAGGTGGTCGCACTTTGGAGCAGCGTCCGACAAACGAACCAG
CAACACCCACCAGCAGTACGACATCGGCGTCGGTTCGCCTGCATAGCAAC
GACAATCATGTAAAAACACCAAAGCACCAAACGAATGGCCATGCTCCGCC
AGAGTCCACGCCCACATCCCCCACGGGTCAGCAGAACTATGTAAATGGAA
ATGCTCAGAATGGAAGTACCAGCGGAAATGGAAGTGGCCAGGCGGCGCAG
CCCCAGAGTGCTAGTAACGGATGGACGCAAGAAGATGCCGCAACGACTAC
TTCACCTTCAACCACAACCTCTCCTCCCAGGCATAGTCAAAGTCCGCCAA
CTCCAAATATATCGCCGCCAGCTTCAGTGACACCCTCTGCAAATGGAAAT
GTGCACAGTCCGAATGCGAACAGCACACCAGCCGGAAGCGGAGGAGGAAG
TAGATCCTATACAGCAGCAACGCCCGGTCAACGCTCTCAGCGTCGGAGCT
CGCGGCAACAAGGTGAGGAGTCCTCCACCAGACGACGGTCTTCACGGGGA
ACAAGAAATGGGGGCACATCTGGCGGCGGAGGTGGAGGTGGATCTGGGCA
GAGGTACGCCTCGGCAGCCATTGCAGCTGCCAATCAGGCAGCACGACCAT
TTTTGGATCTGCCGCCCGGCTATGAAATGCGAACAACGCAACAAGGGCAG
GTATACTTTTATCACATACCCACTGGTGTATCCACGTGGCATGATCCTCG
GATACCCAGAGATTTCGACACCCAACATCTAACGCTTGACGCTATCGGAC
CATTGCCGAGTGGTTGGGAACAGCGAAAGACGGCCTCCGGAAGGGTTTAC
TTTGTGGACCACAACAACCGAACCACACAGTTTACGGATCCCCGGCTAAG
TGGCAGTATTTTGCAAATGATTCGACGTGGAACCGTACCACCAACATCCG
CTGCAAATGCTGGAACACCAGCTCCGCCATCGGCTACTCCTGCTACCCCC
TCGGCCGCAGCAGCAGTTCCACCACAGGCGACGCCGGCGAGCAACGCAAC
TCCAACGACGCTTACAACTACAACAAACCCGCCCCATCGTATTGTTCCGG
ATCTGCCACAGGGATTGCTTGAAGGCGCCGACCTTTTGCCCAAGTACCGC
CGCGATTTGGTTGGCAAGCTGCGGGCTCTGCGCACGGAGCTGCAAACGAT
GCAGCCGCAATCCGGCCACTGCCGTTTGGAGGTGTCACGCAACGAGATTT
TCGAGGAGAGCTATAGACTGATAATGAAAATGCGGGCCAAGGACATGCGA
AAGCGTCTAATGGTTAAATTTAAGGGCGAGGAGGGCCTGGACTATGGTGG
CGTAGCACGCGAGTGGTTGCATCTGCTTTCCCGAGAGATGTTGAATCCGC
AGTATGGCCTATTCCAGTACAGTAGGGATGATCACTACACGCTGCAAATT
AATCCAGACTCCGGTGTGAATCCCGATCACTTGTCCTATTTTCATTTCGT
GGGTCGCACACTAGGGATTGCCGTGTTCCACGGTCACTGTCTGGATGGTG
GGTTCACTACACCCTTCTACAAGCAGCTGCTGAACAAGCCGATTACGCTT
GGTGATATTGAAGGCGTGGATCCGGACCTACATCGCAGCCTCACCTGGAT
GCTGGAAAGCAACATCAGCGGCATCATTGAATCCACATTCAGTGTAGAGA
ACAATAGCTTTGGTGCTCTGGTGGTGCATGAACTGAAGCCTGGCGGTGCC
TCCATTCCAGTGACGGAGGAGAACAAACGCGAGTATGTCAAGCTCTATGT
GAACTATCGTTTTATGCGCGGCATTGAACAACAATTTTTGGCTCTGCAGA
AAGGTTTTTGTGAGCTTATACCCAGCCATCTCCTAAGACCGTTTGATGAG
CGCGAATTGGAATTGGTCATTGGTGGCATCTCTAGCATAGATGTCAACGA
CTGGCGGAACAATACGAGACTGAAGCACTGTACGAACGAAACGACGCAGG
TGTTGTGGTTCTGGCAGGTGGTCGAGTCCTATAGTTCTGAGATGAGAGCC
CGTCTGCTGCAATTCGTGACAGGATCATCGCGAGTGCCGCTGCAGGGCTT
CAGAGCGCTACAGGGCTCCACGGGAGCGGTGGGACCACGGCTGTTTACTA
TTCACCTGACTGCCGACGTGCCCACGCAGAACCTGCCCAAGGCGCACACC
TGCTTTAACCGGATCGATTTGCCGCCCTACGAGACGTACCAGCTACTTTG
CGACAAGCTGACGCAGGCCGTTGAGGAGACCTGTGGATTTGCCGTGGAGT
AAAAGCTTTCTAGACCAT

BS15555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-RB 3186 CG4943-PB 1..3186 17..3202 15930 100 Plus
Smurf-RA 3186 CG4943-PA 1..3186 17..3202 15930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-RB 5365 CG4943-RB 905..4090 17..3202 15930 100 Plus
Smurf-RA 4885 CG4943-RA 905..4090 17..3202 15930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17600142..17602348 348..2554 11035 100 Plus
2R 25286936 2R 17602900..17603186 2916..3202 1435 100 Plus
2R 25286936 2R 17599850..17600086 111..347 1185 100 Plus
2R 25286936 2R 17602404..17602607 2554..2757 1020 100 Plus
2R 25286936 2R 17602661..17602829 2752..2920 845 100 Plus
2R 25286936 2R 17593850..17593904 17..71 275 100 Plus
2R 25286936 2R 17593966..17594006 72..112 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:22:13 has no hits.

BS15555.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:57 Download gff for BS15555.complete
Subject Subject Range Query Range Percent Splice Strand
lack-RA 882..4065 17..3200 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:37 Download gff for BS15555.complete
Subject Subject Range Query Range Percent Splice Strand
lack-RA 905..4088 17..3200 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:31 Download gff for BS15555.complete
Subject Subject Range Query Range Percent Splice Strand
lack-RA 882..4065 17..3200 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:00 Download gff for BS15555.complete
Subject Subject Range Query Range Percent Splice Strand
Smurf-RA 905..4088 17..3200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:00 Download gff for BS15555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17602902..17603184 2918..3200 100   Plus
2R 17602663..17602826 2754..2917 100 -> Plus
2R 17593850..17593904 17..71 100 -> Plus
2R 17593966..17594004 72..110 100 -> Plus
2R 17599850..17600086 111..347 100 -> Plus
2R 17600142..17602347 348..2553 100 -> Plus
2R 17602404..17602603 2554..2753 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:37 Download gff for BS15555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13481355..13481409 17..71 100 -> Plus
arm_2R 13481471..13481509 72..110 100 -> Plus
arm_2R 13487355..13487591 111..347 100 -> Plus
arm_2R 13487647..13489852 348..2553 100 -> Plus
arm_2R 13489909..13490108 2554..2753 100 -> Plus
arm_2R 13490168..13490331 2754..2917 100 -> Plus
arm_2R 13490407..13490689 2918..3200 100   Plus

BS15555.3prime Sequence

795 bp (749 high quality bases) assembled on 2006-12-21

> BS15555.3prime
ATGGTCTAGAAAGCTTTTACTCCTCGGCAAATCCACAGGTCTCCTCAACG
GCCTGCGTCAGCTTGTCGCAAAGTAGCTGGTACGTCTCGTAGGGCGGCAA
ATCGATCCGGTTAAAGCAGGTGTGCGCCTTGGGCAGGTTCTGCGTGGGCA
CGTCGGCAGTCAGGTGAATAGTAAACAGCCGTGGTCCCACCGCTCCCGTG
GAGCCCTGTAGCGCTCTGAAGCCCTGCAGCGGCACTCGCGATGATCCTGT
CACGAATTGCAGCAGACGGGCTCTCATCTCAGAACTATAGGACTCGACCA
CCTGCCAGAACCACAACACCTGCGTCGTTTCGTTCGTACAGTGCTTCAGT
CTCGTATTGTTCCGCCAGTCGTTGACATCTATGCTAGAGATGCCACCAAT
GACCAATTCCAATTCGCGCTCATCAAACGGTCTTAGGAGATGGCTGGGTA
TAAGCTCACAAAAACCTTTCTGCAGAGCCAAAAATTGTTGTTCAATGCCG
CGCATAAAACGATAGTTCACATAGAGCTTGACATACTCGCGTTTGTTCTC
CTCCGTCACTGGAATGGAGGCACCGCCAGGCTTCAGTTCATGCACCACCA
GAGCACCAAAGCTATTGTTCTCTACACTGAATGTGGATTCAATGATGCCG
CTGATGTTGCTTTCCAGCATCCAGGTGAGGCTGCGATGTANGTCCGGATC
CACGCCTTCAATATCACCAAGCGTAATCGGCTTGTTCAGCAGCTGCTTGT
AGAANGGTGTAGTGAACCCACCATCCAGACAGTGACCGTGGAACA

BS15555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4943-PA 3186 lack-RA 2408..3186 795..17 3832 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-RB 5365 CG4943-RB 3312..4090 795..17 3858 99.6 Minus
Smurf-RA 4885 CG4943-RA 3312..4090 795..17 3858 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17602900..17603186 303..17 1420 99.7 Minus
2R 25286936 2R 17602404..17602607 665..462 1020 100 Minus
2R 25286936 2R 17602661..17602829 467..299 845 100 Minus
2R 25286936 2R 17602218..17602348 795..665 633 98.5 Minus
Blast to na_te.dros performed on 2015-02-05 21:31:38 has no hits.

BS15555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:00 Download gff for BS15555.3prime
Subject Subject Range Query Range Percent Splice Strand
lack-PA 2409..3186 17..794 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:01 Download gff for BS15555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4943-PA 2409..3186 17..794 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:21:05 Download gff for BS15555.3prime
Subject Subject Range Query Range Percent Splice Strand
lack-RA 3313..4090 17..794 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:22:50 Download gff for BS15555.3prime
Subject Subject Range Query Range Percent Splice Strand
Smurf-RA 3313..4090 17..794 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:22:50 Download gff for BS15555.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17602219..17602347 666..794 98 -> Minus
2R 17602404..17602603 466..665 100 -> Minus
2R 17602663..17602826 302..465 100 -> Minus
2R 17602902..17603186 17..301 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:21:05 Download gff for BS15555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13489724..13489852 666..794 98 -> Minus
arm_2R 13489909..13490108 466..665 100 -> Minus
arm_2R 13490168..13490331 302..465 100 -> Minus
arm_2R 13490407..13490691 17..301 99   Minus

BS15555.5prime Sequence

874 bp (786 high quality bases) assembled on 2006-12-21

> BS15555.5prime
GAAGTTATCCTTCGACATGAATAAATTGGATTACCCACGTCGCAATGGTA
CACACAAAGTTCGAATAACGATATTGTGTGCTAGAAACTTGGCCCGCAAG
GATTTATTTCGTCTACCCGATCCCTTTGCTAAGGTGCAGGTGGATGGAAC
TGGGCAGGTGTACTCGACGGAAATAAGCAAATCCTCTCTGGATCCAAAAT
GGAATGCACATTACGATTTGTTTTTGGGCATTGGGGATGCCATTACGATA
ACTGTGTGGAATCAGCGAAAGATACACAAGGGCAGTGGATTCCTGGGCTG
TGTGAGGATACCGGCGTTCAACATACAGAGCCTCAAAGGAGCTGGGTTTC
AACGCTTGGATCTGGGAAAACTGTCGCCGGATGACGATGAGCTTGTACGT
GGTCAAATCATCATTTCGTTGCTCTCGAAGGACGGTCCTAGTAGTGGTAA
TCCTCTGGCCATTGTAGGACCCAGTGGTGATGTCCGTGGACCGTCGGAAG
ATGACTCCTCGGAAGATAGTTTGCCAGAGGGTTGGGAGGAGCGGCGTACG
GACAACGGTCGAGTTTACTATGTGAACCATGCCACCAAATCGACGCAGTG
GGATCGACCAAGACAGCCAGGAGTAGTTGGATCCAGTCACGCCACTTCAC
CACAGCAACGGCACAACACGCACAATGGCAACAGCGGTGATCGACAAGCT
CCGGCTGGGCCAACCCGCTCTACAACTTGCACGAACCTGATGAATAACGG
TCATCGCAGCCGGGACTTGTCTGTGACGGCTTCAGATGAACGTAGACACT
CTACGGAAATCCTGTCCAGCGTGGGCAAGGAGAACACCAGCCCCACCACG
CCCGTTTCGGCCACGAACACGCCT

BS15555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4943-PA 3186 lack-RA 1..850 17..866 4225 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-RB 5365 CG4943-RB 905..1762 17..874 4245 99.7 Plus
Smurf-RA 4885 CG4943-RA 905..1762 17..874 4245 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17600142..17600668 348..874 2590 99.4 Plus
2R 25286936 2R 17599850..17600086 111..347 1185 100 Plus
2R 25286936 2R 17593850..17593904 17..71 275 100 Plus
2R 25286936 2R 17593966..17594006 72..112 205 100 Plus
Blast to na_te.dros performed on 2015-02-02 14:04:22 has no hits.

BS15555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:01 Download gff for BS15555.5prime
Subject Subject Range Query Range Percent Splice Strand
lack-PA 1..858 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:02 Download gff for BS15555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4943-PA 1..858 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:14:01 Download gff for BS15555.5prime
Subject Subject Range Query Range Percent Splice Strand
lack-RA 903..1762 11..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:51:09 Download gff for BS15555.5prime
Subject Subject Range Query Range Percent Splice Strand
Smurf-RA 903..1762 11..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:51:09 Download gff for BS15555.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17593848..17593904 11..71 93 -> Plus
2R 17593966..17594004 72..110 100 -> Plus
2R 17599850..17600086 111..347 100 -> Plus
2R 17600142..17600668 348..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:14:01 Download gff for BS15555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13481353..13481409 11..71 93 -> Plus
arm_2R 13481471..13481509 72..110 100 -> Plus
arm_2R 13487355..13487591 111..347 100 -> Plus
arm_2R 13487647..13488173 348..874 99   Plus

BS15555.pep Sequence

Translation from 16 to 3201

> BS15555.pep
MNKLDYPRRNGTHKVRITILCARNLARKDLFRLPDPFAKVQVDGTGQVYS
TEISKSSLDPKWNAHYDLFLGIGDAITITVWNQRKIHKGSGFLGCVRIPA
FNIQSLKGAGFQRLDLGKLSPDDDELVRGQIIISLLSKDGPSSGNPLAIV
GPSGDVRGPSEDDSSEDSLPEGWEERRTDNGRVYYVNHATKSTQWDRPRQ
PGVVGSSHATSPQQRHNTHNGNSGDRQAPAGPTRSTTCTNLMNNGHRSRD
LSVTASDERRHSTEILSSVGKENTSPTTPVSATTTPGKKTSSSNSSSAGG
RTLEQRPTNEPATPTSSTTSASVRLHSNDNHVKTPKHQTNGHAPPESTPT
SPTGQQNYVNGNAQNGSTSGNGSGQAAQPQSASNGWTQEDAATTTSPSTT
TSPPRHSQSPPTPNISPPASVTPSANGNVHSPNANSTPAGSGGGSRSYTA
ATPGQRSQRRSSRQQGEESSTRRRSSRGTRNGGTSGGGGGGGSGQRYASA
AIAAANQAARPFLDLPPGYEMRTTQQGQVYFYHIPTGVSTWHDPRIPRDF
DTQHLTLDAIGPLPSGWEQRKTASGRVYFVDHNNRTTQFTDPRLSGSILQ
MIRRGTVPPTSAANAGTPAPPSATPATPSAAAAVPPQATPASNATPTTLT
TTTNPPHRIVPDLPQGLLEGADLLPKYRRDLVGKLRALRTELQTMQPQSG
HCRLEVSRNEIFEESYRLIMKMRAKDMRKRLMVKFKGEEGLDYGGVAREW
LHLLSREMLNPQYGLFQYSRDDHYTLQINPDSGVNPDHLSYFHFVGRTLG
IAVFHGHCLDGGFTTPFYKQLLNKPITLGDIEGVDPDLHRSLTWMLESNI
SGIIESTFSVENNSFGALVVHELKPGGASIPVTEENKREYVKLYVNYRFM
RGIEQQFLALQKGFCELIPSHLLRPFDERELELVIGGISSIDVNDWRNNT
RLKHCTNETTQVLWFWQVVESYSSEMRARLLQFVTGSSRVPLQGFRALQG
STGAVGPRLFTIHLTADVPTQNLPKAHTCFNRIDLPPYETYQLLCDKLTQ
AVEETCGFAVE*

BS15555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
Smurf-PB 1061 CG4943-PB 1..1061 1..1061 5617 100 Plus
Smurf-PA 1061 CG4943-PA 1..1061 1..1061 5617 100 Plus
Su(dx)-PF 949 CG4244-PF 230..949 360..1061 1125 36.8 Plus
Su(dx)-PE 949 CG4244-PE 230..949 360..1061 1125 36.8 Plus
Su(dx)-PA 949 CG4244-PA 230..949 360..1061 1125 36.8 Plus