Clone Sequence Records
BS15558.complete Sequence
302 bp assembled on 2006-11-29
> BS15558.complete
GAAGTTATCAGTCGACATGAATAATGCGAAAGCCATTTTAGAGGGTCCGA
GACAACGGCGAAGAAAGGAGAAAGAAAGGCCGACCGCTGTGATAATACCC
GATGCTCCAAAACAAATTAGCATAATCAAGGCGCCTGCCCAATGGCTGAC
CATTGAGAGATACATACATCTATTGAGAAAAAAACGCACTTTTGTGCCGC
GATCATTAACGCGATCAAATGCAAATGAGGCGACATCAGTCAAGCGGCCG
AAAGCGAAATGTGCAGCAGCATCATCAGCTCGATAAAAGCTTTCTAGACC
AT
BS15558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 16:19:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42445-RA | 1043 | CG42445-RA | 133..402 | 17..286 | 1350 | 100 | Plus |
| CG42445-RB | 1062 | CG42445-RB | 235..493 | 28..286 | 1295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8155322..8155580 | 286..28 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:15 has no hits.
BS15558.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:34 Download gff for
BS15558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7498-RA | 1..270 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:04 Download gff for
BS15558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 121..400 | 9..293 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:52 Download gff for
BS15558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 133..400 | 17..284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:35 Download gff for
BS15558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7498-RA | 99..378 | 9..293 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:20 Download gff for
BS15558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 133..400 | 17..284 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:20 Download gff for
BS15558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8155324..8155587 | 21..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:52 Download gff for
BS15558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8148424..8148687 | 21..284 | 98 | | Minus |
BS15558.5prime Sequence
300 bp (300 high quality bases) assembled on 2006-12-21
> BS15558.5prime
GAAGTTATCCTTTGAGATGAATAATGCGAAAGCCATTTTAGAGGGTCCGA
GACAACGGCGAAGAAAGGAGAAAGAAAGGCCGACCGCTGTGATAATACCC
GATGCTCCAAAACAAATTAGCATAATCAAGGCGCCTGCCCAATGGCTGAC
CATTGAGAGATACATACATCTATTGAGAAAAAAACGCACTTTTGTGCCGC
GATCATTAACGCGATCAAATGCAAATGAGGCGACATCAGTCAAGCGGCCG
AAAGCGAAATGTGCAGCAGCATCATCAGCTCGATAAAAGCTTTCTAGACC
BS15558.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7498-PA | 270 | CG7498-RA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42445-RA | 1043 | CG42445-RA | 132..402 | 16..286 | 1355 | 100 | Plus |
| CG42445-RB | 1062 | CG42445-RB | 235..493 | 28..286 | 1295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8155322..8155580 | 286..28 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 03:14:57 has no hits.
BS15558.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:08 Download gff for
BS15558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7498-PA | 1..270 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:12 Download gff for
BS15558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7498-PA | 1..270 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:30:20 Download gff for
BS15558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 130..406 | 13..293 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:09:11 Download gff for
BS15558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 130..406 | 13..293 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:09:11 Download gff for
BS15558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8155318..8155579 | 29..293 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:30:20 Download gff for
BS15558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8148418..8148679 | 29..293 | 98 | <- | Minus |
BS15558.3prime Sequence
324 bp (324 high quality bases) assembled on 2006-12-21
> BS15558.3prime
TACAATAAAGCGCGCGCCAAANGAAGGGNCNAGAAAGCTTTTACCCTTCT
GATGATGCTGCTGCACATTTCGCTTTCGGCCGCTTGACTGATGTCGCCTC
ATTTGCATTTGATCGCGTTAATGATCGCGGCACAAAAGTGCGTTTTTTTC
TCAATAGATGTATGTATCTCTCAATGGTCAGCCATTGGGCAGGCGCCTTG
ATTATGCTAATTTGTTTTGGAGCATCGGGTATTATCACAGCGGTCGGCCT
TTCTTTCTCCTTTCTTCGCCGTTGTCTCGGACCCTCTAAAATGGCTTTCG
CATTATTCATGTCGACTGATAACT
BS15558.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7498-PA | 270 | CG7498-RA | 1..262 | 310..49 | 1310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42445-RA | 1043 | CG42445-RA | 133..394 | 310..49 | 1310 | 100 | Minus |
| CG42445-RB | 1062 | CG42445-RB | 235..485 | 299..49 | 1255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8155330..8155580 | 49..299 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:07:22 has no hits.
BS15558.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:07 Download gff for
BS15558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7498-PA | 1..270 | 41..310 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:10 Download gff for
BS15558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7498-PA | 1..270 | 41..310 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:32:11 Download gff for
BS15558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 127..402 | 41..318 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:55:25 Download gff for
BS15558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42445-RA | 127..402 | 41..318 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:55:25 Download gff for
BS15558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8155322..8155587 | 41..306 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:32:11 Download gff for
BS15558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8148422..8148687 | 41..306 | 97 | | Plus |
BS15558.pep Sequence
Translation from 16 to 285
> BS15558.pep
MNNAKAILEGPRQRRRKEKERPTAVIIPDAPKQISIIKAPAQWLTIERYI
HLLRKKRTFVPRSLTRSNANEATSVKRPKAKCAAASSAR*
Sequence BS15558.pep has no blast hits.
