Clone Sequence Records
BS15560.3prime Sequence
844 bp (721 high quality bases) assembled on 2006-12-21
> BS15560.3prime
ATGGTCTAGAAAGCTTTCAGCATTTGATCAGATTGCTGACCGGGAAGGAG
CGCCGGAGACTCATGCACTTCTCTCGGTCGATGAACAGGGCATTGACTTT
GTTGCGCAGATCCACCTCCAGGGTGCAGCGCGTCTTTAGTAGGCCCTGAT
GGGTGGCCTCCGCCTCCATCAGCTTGTGGTGCAGCGTCTCCACGGCACCC
TGGATGTCCTGCACCTCCTGGACGAGGCGGTCCTGGGCGTGGTCCTTGCA
CAGCTCGACGCCCTCGCGGTGGGAGCGGGCCTCCAGCCGCGTCTGGGCCA
CTTTCAACGGCCCGGACTTGTCCTGGATGGCCTTCTGCAGGAGGAAGAGA
TGCTTCTCCATGTCGAACAGCTCCTGTTGGACCTTCTGAAGGTGCAGCTG
CACCCGGTTCTTCGCCTCGGCCATCTCCTGCGAGCGGCGATCGAAGGCGT
TGTTCGTGTTGCTCCAGAAGTCCCACACGGTGGTGGCCACCGAGTTGACC
ACACTCTGGGCATCGCTCCGCAGCTGGGAAAGCTTCGCGCGCTCCGCCTG
GGAACGGCGGACGTGCTCGCTGCTGGCCTGCGCCCAGGACTCCTGGGTGC
TGACCGAGGGATCGAACTTCTCGATGCCGCCGTAGTAGGTGATGCCGCGG
CTGTGGTTGTTCAGCTGGTGGCACATGGAGTCGATGCCGAGCGAGGACTC
CTTGTGCGACACATCGTCCTCGAGGAGATGCTGGGCGCCGCGGCAGTCGA
GGGCCTGCTTCGAGATCTTCTCGTGCAGGCCGCCTAGCCGGTCACGGGAG
TTCCTCAAGTTGTTGATCTCAACGAGGAGGGCCTTCTCCACGAT
BS15560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-PA | 1806 | CG32820-RA | 979..1799 | 844..24 | 4105 | 100 | Minus |
| CG32820-PB | 1563 | CG32820-RB | 736..1556 | 844..24 | 4105 | 100 | Minus |
| CG32819-PB | 1563 | CG32819-RB | 736..1556 | 844..24 | 4105 | 100 | Minus |
| CG32819-PA | 1806 | CG32819-RA | 979..1799 | 844..24 | 4105 | 100 | Minus |
| CG17450-PB | 1806 | CG17450-RB | 979..1799 | 844..24 | 4055 | 99.7 | Minus |
| CG17450-PA | 1563 | CG17450-RA | 736..1556 | 844..24 | 4055 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-RB | 2034 | CG32820-RB | 884..1711 | 844..17 | 4110 | 99.8 | Minus |
| CG32820-RA | 2418 | CG32820-RA | 1268..2095 | 844..17 | 4110 | 99.8 | Minus |
| CG32819-RA | 2191 | CG32819-RA | 1041..1868 | 844..17 | 4110 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21612190..21612728 | 17..555 | 2665 | 99.6 | Plus |
| X | 23542271 | X | 21618282..21618820 | 17..555 | 2665 | 99.6 | Plus |
| X | 23542271 | X | 21606095..21606633 | 17..555 | 2635 | 99.3 | Plus |
| X | 23542271 | X | 21606796..21607085 | 555..844 | 1450 | 100 | Plus |
| X | 23542271 | X | 21612888..21613177 | 555..844 | 1450 | 100 | Plus |
| X | 23542271 | X | 21618980..21619269 | 555..844 | 1450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:28:21 has no hits.
BS15560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:11 Download gff for
BS15560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32820-PA | 979..1806 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:16 Download gff for
BS15560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32819-PA | 979..1806 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:24:37 Download gff for
BS15560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32820-RB | 884..1711 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:22:34 Download gff for
BS15560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32819-RA | 1041..1868 | 17..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:22:34 Download gff for
BS15560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21612190..21612727 | 17..554 | 99 | <- | Plus |
| X | 21612888..21613177 | 555..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:24:37 Download gff for
BS15560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21483217..21483754 | 17..554 | 99 | <- | Plus |
| arm_X | 21483915..21484204 | 555..844 | 100 | | Plus |
BS15560.complete Sequence
1838 bp assembled on 2010-06-25
GenBank Submission: KX803460
> BS15560.complete
GAAGTTATCAGTCGACATGCTCTGCTGGGCCAACGAGGATCACTATCTGA
GCCAACGCTACCCGAATCCGCAGCAAAAGGCGCCAGAAACGCTTAAGAAC
CTGCTGTTGCGATCCAGTGTACCGATAGTGGGTGCTCCGAATCCCGAGAA
GGACTCGCATTTCGCCGGCACCATGGCACCGCTCAAGGGTCAGGAGGTGC
TTAAGTTCCACAAGCACTCCTACCTCGAGAACCGCATCTTCGATCACCGC
CTGGTCAAGGACAACCTGCTGGACAAGTGGCCCACCGCTGACATGAACGA
GTACAACGAGCGCAAGGACCACCGCAACCTCATGGAGTCCTATCCATGGA
GCCAGGCGGGCGCTCCGCCCTGCATGGAGCCCGTCATGGGGCCTTCGATC
CCGCCGAGAGTTGGCGCCGCCTACGAGACGCCCACGAAGCACCCGTGGCG
CCCTGCTATGGCCTATGAGCTAATCCAGGTGAAGCATATGCCCGAGCAGC
CGGTGACCAACCAGCTGACCAAGCAGTGCTTCCTGCCCAAGGGCATGAAG
ACGGACGGCATGATATTCCCCAACTTGGTCACCGGGTTCGATCGCAATCC
ACAGCACGCCGCCCGGGCTGCCCTCTACACGCGGTACACCAGCAACGAGT
GGTACAACAACAACATGACCAAGTACTCCGAGTCGAACATGAATCGCAAC
CTCTCGGAGCGCATGCGGAATGACGCAGTGCGTCTGATGCGGGAGACGGA
CGAGAAGGCCACCTCGGGCCAGAGGGACGCCGGCCGAAGGCTGGGCGAGC
GCATCACCGACCTGACCTTCTGGCGCAACGAGCTGAACGCGGAGCTGGAG
AAGCTGATCGCCGAGATGTCGGACATCAACGAGCTGCAGCGGCAGTGCGG
CAAGGCACTTCTCGACCTGGAGATACCACTGCACATCGCCCAGGAGTGCC
TCTTTCACCGAGAGTCGCGCCAGGGCACGGAGAAGGTGCATGACATCGTG
GAGAAGGCCCTCCTCGTTGAGATCAACAACTTGAGGAACTCCCGTGACCG
GCTAGGCGGCCTGCACGAGAAGATCTCGAAGCAGGCCCTCGACTGCCGCG
GCGCCCAGCATCTCCTCGAGGACGATGTGTCGCACAAGGAGTCCTCGCTC
GGCATCGACTCCATGTGCCACCAGCTGAACAACCACAGCCGCGGCATCAC
CTACTACGGCGGCATCGAGAAGTTCGATCCCTCGGTCAGCACCCAGGAGT
CCTGGGCGCAGGCCAGCAGCGAGCACGTCCGCCGTTCCCAGGCGGAGCGC
GCGAAGCTTTCCCAGCTGCGGAGCGATGCCCAGAGTGTGGTCAACTCGGT
GGCCACCACCGTGTGGGACTTCTGGAGCAACACGAACAACGCCTTCGATC
GCCGCTCGCAGGAGATGGCCGAGGCGAAGAACCGGGTGCAGCTGCACCTT
CAGAAGGTCCAACAGGAGCTGTTCGACATGGAGAAGCATCTCTTCCTCCT
GCAGAAGGCCATCCAGGACAAGTCCGGGCCGTTGAAAGTGGCCCAGACGC
GGCTGGAGGCCCGCTCCCACCGCGAGGGCGTCGAGCTGTGCAAGGACCAC
GCCCAGGACCGCCTCGTCCAGGAGGTGCAGGACATCCAGGGTGCCGTGGA
GACGCTGCACCACAAGCTGATGGAGGCGGAGGCCACCCATCAGGGCCTAC
TAAAGACGCGCTGCACCCTGGAGGTGGATCTGCGCAACAAAGTCAATGCC
CTGTTCATCGACCGAGAGAAGTGCATGAGTCTCCGGCGCTCCTTCCCGGT
CAGCAATCTGATCAAGTACTGAAAGCTTTCTAGACCAT
BS15560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-RA | 1806 | CG32820-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| CG32819-RA | 1806 | CG32819-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| CG17450-RB | 1806 | CG17450-PB | 1..1806 | 17..1822 | 8985 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-RA | 2418 | CG32820-RA | 290..2095 | 17..1822 | 9030 | 100 | Plus |
| CG32819-RA | 2191 | CG32819-RA | 63..1868 | 17..1822 | 9030 | 100 | Plus |
| CG17450-RB | 1995 | CG17450-RB | 63..1868 | 17..1822 | 8985 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21606796..21607384 | 1284..696 | 2945 | 100 | Minus |
| X | 23542271 | X | 21612888..21613476 | 1284..696 | 2945 | 100 | Minus |
| X | 23542271 | X | 21618980..21619568 | 1284..696 | 2945 | 100 | Minus |
| X | 23542271 | X | 21612190..21612728 | 1822..1284 | 2695 | 100 | Minus |
| X | 23542271 | X | 21618282..21618820 | 1822..1284 | 2695 | 100 | Minus |
| X | 23542271 | X | 21606095..21606633 | 1822..1284 | 2665 | 99.6 | Minus |
| X | 23542271 | X | 21607507..21607859 | 696..344 | 1765 | 100 | Minus |
| X | 23542271 | X | 21613599..21613951 | 696..344 | 1765 | 100 | Minus |
| X | 23542271 | X | 21619691..21620043 | 696..344 | 1765 | 100 | Minus |
| X | 23542271 | X | 21614624..21614950 | 343..17 | 1635 | 100 | Minus |
| X | 23542271 | X | 21620716..21621042 | 343..17 | 1635 | 100 | Minus |
| X | 23542271 | X | 21608532..21608858 | 343..17 | 1620 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:47:57 has no hits.
BS15560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:49 Download gff for
BS15560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32820-RA | 63..1867 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:47 Download gff for
BS15560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32820-RA | 63..1867 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:12 Download gff for
BS15560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32819-RA | 63..1867 | 17..1821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:12 Download gff for
BS15560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21612191..21612727 | 1285..1821 | 100 | <- | Minus |
| X | 21612888..21613475 | 697..1284 | 100 | <- | Minus |
| X | 21613599..21613951 | 344..696 | 100 | <- | Minus |
| X | 21614624..21614950 | 17..343 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:47 Download gff for
BS15560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21483218..21483754 | 1285..1821 | 100 | <- | Minus |
| arm_X | 21483915..21484502 | 697..1284 | 100 | <- | Minus |
| arm_X | 21484626..21484978 | 344..696 | 100 | <- | Minus |
| arm_X | 21485651..21485977 | 17..343 | 100 | | Minus |
BS15560.pep Sequence
Translation from 16 to 1821
> BS15560.pep
MLCWANEDHYLSQRYPNPQQKAPETLKNLLLRSSVPIVGAPNPEKDSHFA
GTMAPLKGQEVLKFHKHSYLENRIFDHRLVKDNLLDKWPTADMNEYNERK
DHRNLMESYPWSQAGAPPCMEPVMGPSIPPRVGAAYETPTKHPWRPAMAY
ELIQVKHMPEQPVTNQLTKQCFLPKGMKTDGMIFPNLVTGFDRNPQHAAR
AALYTRYTSNEWYNNNMTKYSESNMNRNLSERMRNDAVRLMRETDEKATS
GQRDAGRRLGERITDLTFWRNELNAELEKLIAEMSDINELQRQCGKALLD
LEIPLHIAQECLFHRESRQGTEKVHDIVEKALLVEINNLRNSRDRLGGLH
EKISKQALDCRGAQHLLEDDVSHKESSLGIDSMCHQLNNHSRGITYYGGI
EKFDPSVSTQESWAQASSEHVRRSQAERAKLSQLRSDAQSVVNSVATTVW
DFWSNTNNAFDRRSQEMAEAKNRVQLHLQKVQQELFDMEKHLFLLQKAIQ
DKSGPLKVAQTRLEARSHREGVELCKDHAQDRLVQEVQDIQGAVETLHHK
LMEAEATHQGLLKTRCTLEVDLRNKVNALFIDREKCMSLRRSFPVSNLIK
Y*
BS15560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32820-PA | 601 | CG32820-PA | 1..601 | 1..601 | 3170 | 100 | Plus |
| CG32819-PA | 601 | CG32819-PA | 1..601 | 1..601 | 3170 | 100 | Plus |
| CG17450-PB | 601 | CG17450-PB | 1..601 | 1..601 | 3164 | 99.8 | Plus |
| CG32820-PB | 520 | CG32820-PB | 29..520 | 110..601 | 2574 | 100 | Plus |
| CG32819-PB | 520 | CG32819-PB | 29..520 | 110..601 | 2574 | 100 | Plus |
