Clone Sequence Records
BS15572.complete Sequence
2315 bp assembled on 2009-12-07
GenBank Submission: KX802374
> BS15572.complete
GAAGTTATCAGTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCG
TTTCCTGCGCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAA
GTCTCACCATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGG
TGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATA
TGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGC
TCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTT
CGATTTTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGG
AACCACTTAACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAA
AAGATACTCACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCAC
GGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCC
TATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCG
TATTGGAACAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCAC
TTGGCCGGATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCA
TTTTGGCCAAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGAC
GTCAGCATCCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCAC
AGGAACCGTGCAGTCCAACAATTTCCCCGCCAACAAGAAGTATCTGCTGG
CCTTCAAAGGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAAC
TCGCTCTTTCATTTGCACAACGGACGCGACATGGTCCTGGTCACCACCTG
TCGCCACGGGAAAAGTTGGCGGGAGCTGCAGGATAATCGCTGCGACGAGG
ACAACCGGGAATACGACAGATACGACTACGAGACCTTACTGCAAAATTCC
ACTTTCTGCTTGGTGCCGCGCGGACGTCGTTTGGGTTCCTTTAGATTCCT
CGAAGCCTTGCAGGCTGGTTGCATTCCCGTACTATTGTCCAATGCCTGGG
TGTTGCCGTTTGAATCGAAAATCGATTGGAAGCAGGCCGCCATTTGGGCC
GATGAGCGGCTCCTGCTGCAGGTACCCGACATCGTGCGCTCCATACCGGC
GGAACGCATCTTCGCCCTCCGCCAGCAGACGCAGGTCCTGTGGGAACGCT
ACTTCGGATCCATTGAGAAAATCGTCTTCACAACATTCGAGATCATACGC
GAACGTTTGCCGGATTATCCGGTGCGAAGCAGCCTGGTTTGGAACAGCTC
GCCGGGCGCCCTGCTCACGTTGCCCACCTTTGCCGACAGCTCAAGGTACA
TGCCGTTTCTGCTCAACTCGATGGGTGCGGAGCCGCGTCACAACTACACG
GCGGTTATCTATGTGCAGATTGGTGCCGCCCTGGGACCGAATGCAGCGCT
CTACAAGCTAGTCAGGACCATCACGAAGAGCCAGTTCGTGGAGCGGATCC
TTGTCCTTTGGGCAGCCGATCGGCCGTTGCCGTTGAAGAAACGCTGGCCC
CCCACCAGCCACATACCCTTGCACGTGATTTCCCTGGGGGGCAGCACGAG
GAGTCAGGGAGCTGGACCCACAAGCCAGACGACTGAGGGACGACCTAGCA
TATCACAACGATTCCTGCCCTACGATGAGATTCAGACGGATGCCGTTCTG
TCGCTGGATGAAGATGCCATACTCAATACGGATGAACTGGACTTTGCCTA
CACGGTGTGGCGGGATTTTCCCGAGCGCATCGTTGGCTATCCGGCGAGAG
CTCACTTCTGGGATGATTCCAAGAATGCCTGGGGTTATACGTCCAAGTGG
ACAAACTACTATTCGATTGTGCTAACTGGGGCGGCATTCTACCACCGCTA
CTACAACTACTTGTACACCAATTGGCTGTCGTTGCTGCTACTTAAGACTG
TACAGCAGTCCTCCAACTGCGAGGACATCCTAATGAACCTGCTGGTCTCG
CACGTGACCAGAAAGCCGCCGATCAAGGTGACGCAGCGCAAGGGCTACAA
GGATCGAGAGACGGGTCGTTCGCCCTGGAACGATCCCGACCACTTTATCC
AGCGCCAGAGCTGCCTGAATACCTTTGCGGCCGTGTTTGGCTATATGCCG
CTGATACGTTCCAATTTGCGCATGGATCCCATGCTGTATCGTGATCCAGT
TTCCAATTTGCGCAAGAAATACCGCCAGATCGAGTTGGTCGGCAGCTAGA
AGCTTTCTAGACCAT
BS15572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-RB | 2283 | CG10117-PB | 1..2283 | 17..2299 | 11415 | 100 | Plus |
ttv-RA | 2283 | CG10117-PA | 1..2283 | 17..2299 | 11415 | 100 | Plus |
ttv-RC | 900 | CG10117-PC | 1..900 | 1400..2299 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-RB | 6899 | CG10117-RB | 926..3208 | 17..2299 | 11415 | 100 | Plus |
ttv-RA | 3994 | CG10117-RA | 617..2899 | 17..2299 | 11415 | 100 | Plus |
ttv-RC | 2351 | CG10117-RC | 128..1256 | 1171..2299 | 5645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14527192..14527998 | 17..823 | 4005 | 99.8 | Plus |
2R | 25286936 | 2R | 14583304..14583631 | 1546..1873 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 14583692..14584010 | 1872..2190 | 1595 | 100 | Plus |
2R | 25286936 | 2R | 14552911..14553064 | 816..969 | 770 | 100 | Plus |
2R | 25286936 | 2R | 14583094..14583246 | 1394..1546 | 765 | 100 | Plus |
2R | 25286936 | 2R | 14563257..14563387 | 1043..1173 | 655 | 100 | Plus |
2R | 25286936 | 2R | 14564952..14565073 | 1170..1291 | 610 | 100 | Plus |
2R | 25286936 | 2R | 14584117..14584226 | 2190..2299 | 550 | 100 | Plus |
2R | 25286936 | 2R | 14582918..14583025 | 1290..1397 | 540 | 100 | Plus |
2R | 25286936 | 2R | 14563008..14563085 | 967..1044 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:11:12 has no hits.
BS15572.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:40 Download gff for
BS15572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 622..2904 | 17..2299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:07 Download gff for
BS15572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 617..2899 | 17..2299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:54 Download gff for
BS15572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 622..2904 | 17..2299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:51 Download gff for
BS15572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 617..2899 | 17..2299 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:51 Download gff for
BS15572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14527192..14527991 | 17..816 | 100 | -> | Plus |
2R | 14552912..14553064 | 817..969 | 100 | -> | Plus |
2R | 14563011..14563085 | 970..1044 | 100 | -> | Plus |
2R | 14563259..14563385 | 1045..1171 | 100 | -> | Plus |
2R | 14564954..14565073 | 1172..1291 | 100 | -> | Plus |
2R | 14582920..14583023 | 1292..1395 | 100 | -> | Plus |
2R | 14583096..14583246 | 1396..1546 | 100 | -> | Plus |
2R | 14583305..14583631 | 1547..1873 | 100 | -> | Plus |
2R | 14583694..14584010 | 1874..2190 | 100 | -> | Plus |
2R | 14584118..14584226 | 2191..2299 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:07 Download gff for
BS15572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10414697..10415496 | 17..816 | 100 | -> | Plus |
arm_2R | 10440417..10440569 | 817..969 | 100 | -> | Plus |
arm_2R | 10450516..10450590 | 970..1044 | 100 | -> | Plus |
arm_2R | 10450764..10450890 | 1045..1171 | 100 | -> | Plus |
arm_2R | 10452459..10452578 | 1172..1291 | 100 | -> | Plus |
arm_2R | 10470425..10470528 | 1292..1395 | 100 | -> | Plus |
arm_2R | 10470601..10470751 | 1396..1546 | 100 | -> | Plus |
arm_2R | 10470810..10471136 | 1547..1873 | 100 | -> | Plus |
arm_2R | 10471199..10471515 | 1874..2190 | 100 | -> | Plus |
arm_2R | 10471623..10471731 | 2191..2299 | 100 | | Plus |
BS15572.3prime Sequence
902 bp (756 high quality bases) assembled on 2006-12-21
> BS15572.3prime
ATGGTCTAGAAAGCTTCTACCTGCCGACCAACTCGATCTGGCGGTATTTC
TTGCGCAAATTGGAAACTGGATCACGATACAGCATGGGATCCATGCGCAA
ATTGGAACGTATCAGCGGCATATAGCCAAACACGGCCGCAAAGGTATTCA
GGCAGCTCTGGCGCTGGATAAAGTGGTCGGGATCGTTCCAGGGCGAACGA
CCCGTCTCTCGATCCTTGTAGCCCTTGCGCTGCGTCACCTTGATCGGCGG
CTTTCTGGTCACGTGCGAGACCAGCAGGTTCATTAGGATGTCCTCGCAGT
TGGAGGACTGCTGTACAGTCTTAAGTAGCAGCAACGACAGCCAATTGGTG
TACAAGTAGTTGTAGTAGCGGTGGTAGAATGCCGCCCCAGTTAGCACAAT
CGAATAGTAGTTTGTCCACTTGGACGTATAACCCCAGGCATTCTTGGAAT
CATCCCAGAAGTGAGCTCTCGCCGGATAGCCAACGATGCGCTCGGGAAAA
TCCCGCCACACCGTGTAGGCAAAGTCCAGTTCATCCGTATTGAGTATGGC
ATCTTCATCCAGCGACAGAACGGCATCCGTCTGAATCTCATCGTAGGGCA
GGAATCGTTGTGATATGCTAGGTCGTCCCTCAGTCGTCTGGCTTGTGGGT
CCAGCTCCCTGACTCCTCGTGCTGCCCCCCAGGGAAATCACGTGCAAGGG
TATGTGGCTGGTGGGGGGCCAGCGTTTCTTCAACGGCAACGGCCGATCGG
CTGCCCAAAGGACAAGGATCCGCTCCACGAACTGGCTCTTCGTGATGGTC
CTGACTAGCTTGTAGAGCGCTGCATTCGGTCCCAGGGCGGCACCAATCTG
CACATAGATAACCCGCCGTGTAGTTGTGACGCGGCTCCGCACCCATCGAG
TT
BS15572.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10117-PA | 2283 | ttv-RA | 1437..2279 | 863..21 | 4215 | 100 | Minus |
CG10117-PA | 2283 | ttv-RA | 1399..1438 | 902..863 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-RC | 2351 | CG10117-RC | 372..1256 | 902..17 | 4390 | 99.8 | Minus |
ttv-RB | 6899 | CG10117-RB | 2324..3208 | 902..17 | 4390 | 99.8 | Minus |
ttv-RA | 3994 | CG10117-RA | 2015..2899 | 902..17 | 4390 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14583304..14583631 | 770..443 | 1640 | 100 | Minus |
2R | 25286936 | 2R | 14583692..14584010 | 444..126 | 1595 | 100 | Minus |
2R | 25286936 | 2R | 14583115..14583246 | 902..770 | 615 | 99.2 | Minus |
2R | 25286936 | 2R | 14584117..14584226 | 126..17 | 535 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-01-30 04:31:42 has no hits.
BS15572.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:44 Download gff for
BS15572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-PA | 1399..2283 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:43 Download gff for
BS15572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10117-PA | 1399..2283 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:32:03 Download gff for
BS15572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 2015..2899 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:46:49 Download gff for
BS15572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 2015..2899 | 17..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:46:49 Download gff for
BS15572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14583115..14583246 | 770..902 | 99 | -> | Minus |
2R | 14583305..14583631 | 443..769 | 100 | -> | Minus |
2R | 14583694..14584010 | 126..442 | 100 | -> | Minus |
2R | 14584118..14584226 | 17..125 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:32:03 Download gff for
BS15572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10470620..10470751 | 770..902 | 99 | -> | Minus |
arm_2R | 10470810..10471136 | 443..769 | 100 | -> | Minus |
arm_2R | 10471199..10471515 | 126..442 | 100 | -> | Minus |
arm_2R | 10471623..10471731 | 17..125 | 99 | | Minus |
BS15572.5prime Sequence
927 bp (830 high quality bases) assembled on 2006-12-21
> BS15572.5prime
GAAGTTATCCTTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCG
TTTCCTGCGCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAA
GTCTCACCATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGG
TGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATA
TGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGC
TCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTT
CGATTTTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGG
AACCACTTAACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAA
AAGATACTCACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCAC
GGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCC
TATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCG
TATTGGAACAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCAC
TTGGCCGGATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCA
TTTTGGCCAAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGAC
GTCAGCATCCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCAC
AGGAACCGTGCAGTCCAACAATTTCCCCGCCAACAAGAAGTATCTGCTGG
CCTTCAAAGGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAAC
TCGCTCTTTCATTTTGCACACGGACGCGACATGGTCCTGGTCACCACCTG
TCGCCACGGGAAAAGTTGGCGGGAGCT
BS15572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10117-PA | 2283 | ttv-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
CG10117-PA | 2283 | ttv-RA | 854..911 | 870..927 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-RB | 6899 | CG10117-RB | 926..1836 | 17..927 | 4510 | 99.8 | Plus |
ttv-RA | 3994 | CG10117-RA | 617..1527 | 17..927 | 4510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 00:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14527192..14527998 | 17..823 | 4005 | 99.8 | Plus |
2R | 25286936 | 2R | 14552911..14553022 | 816..927 | 485 | 95.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 00:10:12 has no hits.
BS15572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:45 Download gff for
BS15572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:44 Download gff for
BS15572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10117-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:35:15 Download gff for
BS15572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 610..1527 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:35:36 Download gff for
BS15572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ttv-RA | 610..1527 | 9..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:35:36 Download gff for
BS15572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14527185..14527991 | 9..816 | 99 | -> | Plus |
2R | 14552912..14553022 | 817..927 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:35:15 Download gff for
BS15572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10414690..10415496 | 9..816 | 99 | -> | Plus |
arm_2R | 10440417..10440527 | 817..927 | 98 | | Plus |
BS15572.pep Sequence
Translation from 16 to 2298
> BS15572.pep
MQAKKRYILVFVSCAFLAYAYFGGYRLKVSPLRPRRAQHESAKDGGVQPH
EQLPSFLGAHDMQELQLLQSNQSKSLDSSKHLVTRKPDCRMETCFDFTRC
YDRFLVYIYPPEPLNSLGAAPPTSANYQKILTAIQESRYYTSDPTAACLF
VLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNLYSGTWPDYA
ENSLGFDAGEAILAKASMGVLQLRHGFDVSIPLFHKQFPLRAGATGTVQS
NNFPANKKYLLAFKGKRYVHGIGSETRNSLFHLHNGRDMVLVTTCRHGKS
WRELQDNRCDEDNREYDRYDYETLLQNSTFCLVPRGRRLGSFRFLEALQA
GCIPVLLSNAWVLPFESKIDWKQAAIWADERLLLQVPDIVRSIPAERIFA
LRQQTQVLWERYFGSIEKIVFTTFEIIRERLPDYPVRSSLVWNSSPGALL
TLPTFADSSRYMPFLLNSMGAEPRHNYTAVIYVQIGAALGPNAALYKLVR
TITKSQFVERILVLWAADRPLPLKKRWPPTSHIPLHVISLGGSTRSQGAG
PTSQTTEGRPSISQRFLPYDEIQTDAVLSLDEDAILNTDELDFAYTVWRD
FPERIVGYPARAHFWDDSKNAWGYTSKWTNYYSIVLTGAAFYHRYYNYLY
TNWLSLLLLKTVQQSSNCEDILMNLLVSHVTRKPPIKVTQRKGYKDRETG
RSPWNDPDHFIQRQSCLNTFAAVFGYMPLIRSNLRMDPMLYRDPVSNLRK
KYRQIELVGS*
BS15572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ttv-PB | 760 | CG10117-PB | 1..760 | 1..760 | 4043 | 100 | Plus |
ttv-PA | 760 | CG10117-PA | 1..760 | 1..760 | 4043 | 100 | Plus |
ttv-PC | 299 | CG10117-PC | 1..299 | 462..760 | 1597 | 100 | Plus |
Ext2-PB | 717 | CG8433-PB | 58..714 | 56..755 | 883 | 32.6 | Plus |
botv-PA | 972 | CG15110-PA | 707..967 | 470..751 | 474 | 37.1 | Plus |