Clone BS15572 Report

Search the DGRC for BS15572

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:155
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptttv-RA
Protein status:BS15572.pep: full length peptide match
Sequenced Size:2315

Clone Sequence Records

BS15572.complete Sequence

2315 bp assembled on 2009-12-07

GenBank Submission: KX802374

> BS15572.complete
GAAGTTATCAGTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCG
TTTCCTGCGCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAA
GTCTCACCATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGG
TGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATA
TGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGC
TCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTT
CGATTTTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGG
AACCACTTAACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAA
AAGATACTCACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCAC
GGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCC
TATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCG
TATTGGAACAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCAC
TTGGCCGGATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCA
TTTTGGCCAAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGAC
GTCAGCATCCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCAC
AGGAACCGTGCAGTCCAACAATTTCCCCGCCAACAAGAAGTATCTGCTGG
CCTTCAAAGGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAAC
TCGCTCTTTCATTTGCACAACGGACGCGACATGGTCCTGGTCACCACCTG
TCGCCACGGGAAAAGTTGGCGGGAGCTGCAGGATAATCGCTGCGACGAGG
ACAACCGGGAATACGACAGATACGACTACGAGACCTTACTGCAAAATTCC
ACTTTCTGCTTGGTGCCGCGCGGACGTCGTTTGGGTTCCTTTAGATTCCT
CGAAGCCTTGCAGGCTGGTTGCATTCCCGTACTATTGTCCAATGCCTGGG
TGTTGCCGTTTGAATCGAAAATCGATTGGAAGCAGGCCGCCATTTGGGCC
GATGAGCGGCTCCTGCTGCAGGTACCCGACATCGTGCGCTCCATACCGGC
GGAACGCATCTTCGCCCTCCGCCAGCAGACGCAGGTCCTGTGGGAACGCT
ACTTCGGATCCATTGAGAAAATCGTCTTCACAACATTCGAGATCATACGC
GAACGTTTGCCGGATTATCCGGTGCGAAGCAGCCTGGTTTGGAACAGCTC
GCCGGGCGCCCTGCTCACGTTGCCCACCTTTGCCGACAGCTCAAGGTACA
TGCCGTTTCTGCTCAACTCGATGGGTGCGGAGCCGCGTCACAACTACACG
GCGGTTATCTATGTGCAGATTGGTGCCGCCCTGGGACCGAATGCAGCGCT
CTACAAGCTAGTCAGGACCATCACGAAGAGCCAGTTCGTGGAGCGGATCC
TTGTCCTTTGGGCAGCCGATCGGCCGTTGCCGTTGAAGAAACGCTGGCCC
CCCACCAGCCACATACCCTTGCACGTGATTTCCCTGGGGGGCAGCACGAG
GAGTCAGGGAGCTGGACCCACAAGCCAGACGACTGAGGGACGACCTAGCA
TATCACAACGATTCCTGCCCTACGATGAGATTCAGACGGATGCCGTTCTG
TCGCTGGATGAAGATGCCATACTCAATACGGATGAACTGGACTTTGCCTA
CACGGTGTGGCGGGATTTTCCCGAGCGCATCGTTGGCTATCCGGCGAGAG
CTCACTTCTGGGATGATTCCAAGAATGCCTGGGGTTATACGTCCAAGTGG
ACAAACTACTATTCGATTGTGCTAACTGGGGCGGCATTCTACCACCGCTA
CTACAACTACTTGTACACCAATTGGCTGTCGTTGCTGCTACTTAAGACTG
TACAGCAGTCCTCCAACTGCGAGGACATCCTAATGAACCTGCTGGTCTCG
CACGTGACCAGAAAGCCGCCGATCAAGGTGACGCAGCGCAAGGGCTACAA
GGATCGAGAGACGGGTCGTTCGCCCTGGAACGATCCCGACCACTTTATCC
AGCGCCAGAGCTGCCTGAATACCTTTGCGGCCGTGTTTGGCTATATGCCG
CTGATACGTTCCAATTTGCGCATGGATCCCATGCTGTATCGTGATCCAGT
TTCCAATTTGCGCAAGAAATACCGCCAGATCGAGTTGGTCGGCAGCTAGA
AGCTTTCTAGACCAT

BS15572.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-RB 2283 CG10117-PB 1..2283 17..2299 11415 100 Plus
ttv-RA 2283 CG10117-PA 1..2283 17..2299 11415 100 Plus
ttv-RC 900 CG10117-PC 1..900 1400..2299 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-RB 6899 CG10117-RB 926..3208 17..2299 11415 100 Plus
ttv-RA 3994 CG10117-RA 617..2899 17..2299 11415 100 Plus
ttv-RC 2351 CG10117-RC 128..1256 1171..2299 5645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14527192..14527998 17..823 4005 99.8 Plus
2R 25286936 2R 14583304..14583631 1546..1873 1640 100 Plus
2R 25286936 2R 14583692..14584010 1872..2190 1595 100 Plus
2R 25286936 2R 14552911..14553064 816..969 770 100 Plus
2R 25286936 2R 14583094..14583246 1394..1546 765 100 Plus
2R 25286936 2R 14563257..14563387 1043..1173 655 100 Plus
2R 25286936 2R 14564952..14565073 1170..1291 610 100 Plus
2R 25286936 2R 14584117..14584226 2190..2299 550 100 Plus
2R 25286936 2R 14582918..14583025 1290..1397 540 100 Plus
2R 25286936 2R 14563008..14563085 967..1044 390 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:11:12 has no hits.

BS15572.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:40 Download gff for BS15572.complete
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 622..2904 17..2299 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:07 Download gff for BS15572.complete
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 617..2899 17..2299 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:54 Download gff for BS15572.complete
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 622..2904 17..2299 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:51 Download gff for BS15572.complete
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 617..2899 17..2299 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:51 Download gff for BS15572.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14527192..14527991 17..816 100 -> Plus
2R 14552912..14553064 817..969 100 -> Plus
2R 14563011..14563085 970..1044 100 -> Plus
2R 14563259..14563385 1045..1171 100 -> Plus
2R 14564954..14565073 1172..1291 100 -> Plus
2R 14582920..14583023 1292..1395 100 -> Plus
2R 14583096..14583246 1396..1546 100 -> Plus
2R 14583305..14583631 1547..1873 100 -> Plus
2R 14583694..14584010 1874..2190 100 -> Plus
2R 14584118..14584226 2191..2299 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:07 Download gff for BS15572.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10414697..10415496 17..816 100 -> Plus
arm_2R 10440417..10440569 817..969 100 -> Plus
arm_2R 10450516..10450590 970..1044 100 -> Plus
arm_2R 10450764..10450890 1045..1171 100 -> Plus
arm_2R 10452459..10452578 1172..1291 100 -> Plus
arm_2R 10470425..10470528 1292..1395 100 -> Plus
arm_2R 10470601..10470751 1396..1546 100 -> Plus
arm_2R 10470810..10471136 1547..1873 100 -> Plus
arm_2R 10471199..10471515 1874..2190 100 -> Plus
arm_2R 10471623..10471731 2191..2299 100   Plus

BS15572.3prime Sequence

902 bp (756 high quality bases) assembled on 2006-12-21

> BS15572.3prime
ATGGTCTAGAAAGCTTCTACCTGCCGACCAACTCGATCTGGCGGTATTTC
TTGCGCAAATTGGAAACTGGATCACGATACAGCATGGGATCCATGCGCAA
ATTGGAACGTATCAGCGGCATATAGCCAAACACGGCCGCAAAGGTATTCA
GGCAGCTCTGGCGCTGGATAAAGTGGTCGGGATCGTTCCAGGGCGAACGA
CCCGTCTCTCGATCCTTGTAGCCCTTGCGCTGCGTCACCTTGATCGGCGG
CTTTCTGGTCACGTGCGAGACCAGCAGGTTCATTAGGATGTCCTCGCAGT
TGGAGGACTGCTGTACAGTCTTAAGTAGCAGCAACGACAGCCAATTGGTG
TACAAGTAGTTGTAGTAGCGGTGGTAGAATGCCGCCCCAGTTAGCACAAT
CGAATAGTAGTTTGTCCACTTGGACGTATAACCCCAGGCATTCTTGGAAT
CATCCCAGAAGTGAGCTCTCGCCGGATAGCCAACGATGCGCTCGGGAAAA
TCCCGCCACACCGTGTAGGCAAAGTCCAGTTCATCCGTATTGAGTATGGC
ATCTTCATCCAGCGACAGAACGGCATCCGTCTGAATCTCATCGTAGGGCA
GGAATCGTTGTGATATGCTAGGTCGTCCCTCAGTCGTCTGGCTTGTGGGT
CCAGCTCCCTGACTCCTCGTGCTGCCCCCCAGGGAAATCACGTGCAAGGG
TATGTGGCTGGTGGGGGGCCAGCGTTTCTTCAACGGCAACGGCCGATCGG
CTGCCCAAAGGACAAGGATCCGCTCCACGAACTGGCTCTTCGTGATGGTC
CTGACTAGCTTGTAGAGCGCTGCATTCGGTCCCAGGGCGGCACCAATCTG
CACATAGATAACCCGCCGTGTAGTTGTGACGCGGCTCCGCACCCATCGAG
TT

BS15572.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10117-PA 2283 ttv-RA 1437..2279 863..21 4215 100 Minus
CG10117-PA 2283 ttv-RA 1399..1438 902..863 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-RC 2351 CG10117-RC 372..1256 902..17 4390 99.8 Minus
ttv-RB 6899 CG10117-RB 2324..3208 902..17 4390 99.8 Minus
ttv-RA 3994 CG10117-RA 2015..2899 902..17 4390 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14583304..14583631 770..443 1640 100 Minus
2R 25286936 2R 14583692..14584010 444..126 1595 100 Minus
2R 25286936 2R 14583115..14583246 902..770 615 99.2 Minus
2R 25286936 2R 14584117..14584226 126..17 535 99.1 Minus
Blast to na_te.dros performed on 2015-01-30 04:31:42 has no hits.

BS15572.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:44 Download gff for BS15572.3prime
Subject Subject Range Query Range Percent Splice Strand
ttv-PA 1399..2283 17..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:43 Download gff for BS15572.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10117-PA 1399..2283 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:32:03 Download gff for BS15572.3prime
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 2015..2899 17..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:46:49 Download gff for BS15572.3prime
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 2015..2899 17..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:46:49 Download gff for BS15572.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14583115..14583246 770..902 99 -> Minus
2R 14583305..14583631 443..769 100 -> Minus
2R 14583694..14584010 126..442 100 -> Minus
2R 14584118..14584226 17..125 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:32:03 Download gff for BS15572.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10470620..10470751 770..902 99 -> Minus
arm_2R 10470810..10471136 443..769 100 -> Minus
arm_2R 10471199..10471515 126..442 100 -> Minus
arm_2R 10471623..10471731 17..125 99   Minus

BS15572.5prime Sequence

927 bp (830 high quality bases) assembled on 2006-12-21

> BS15572.5prime
GAAGTTATCCTTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCG
TTTCCTGCGCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAA
GTCTCACCATTGAGACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGG
TGGAGTTCAACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATA
TGCAGGAACTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGC
TCCAAGCACCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTT
CGATTTTACCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGG
AACCACTTAACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAA
AAGATACTCACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCAC
GGCCGCCTGTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCC
TATCCGAGGATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCG
TATTGGAACAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCAC
TTGGCCGGATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCA
TTTTGGCCAAGGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGAC
GTCAGCATCCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCAC
AGGAACCGTGCAGTCCAACAATTTCCCCGCCAACAAGAAGTATCTGCTGG
CCTTCAAAGGAAAGCGATACGTGCATGGCATTGGATCGGAGACGCGCAAC
TCGCTCTTTCATTTTGCACACGGACGCGACATGGTCCTGGTCACCACCTG
TCGCCACGGGAAAAGTTGGCGGGAGCT

BS15572.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10117-PA 2283 ttv-RA 1..848 17..864 4240 100 Plus
CG10117-PA 2283 ttv-RA 854..911 870..927 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-RB 6899 CG10117-RB 926..1836 17..927 4510 99.8 Plus
ttv-RA 3994 CG10117-RA 617..1527 17..927 4510 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 00:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14527192..14527998 17..823 4005 99.8 Plus
2R 25286936 2R 14552911..14553022 816..927 485 95.5 Plus
Blast to na_te.dros performed on 2015-02-06 00:10:12 has no hits.

BS15572.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:45 Download gff for BS15572.5prime
Subject Subject Range Query Range Percent Splice Strand
ttv-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:44 Download gff for BS15572.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10117-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:35:15 Download gff for BS15572.5prime
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 610..1527 9..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:35:36 Download gff for BS15572.5prime
Subject Subject Range Query Range Percent Splice Strand
ttv-RA 610..1527 9..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:35:36 Download gff for BS15572.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14527185..14527991 9..816 99 -> Plus
2R 14552912..14553022 817..927 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:35:15 Download gff for BS15572.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10414690..10415496 9..816 99 -> Plus
arm_2R 10440417..10440527 817..927 98   Plus

BS15572.pep Sequence

Translation from 16 to 2298

> BS15572.pep
MQAKKRYILVFVSCAFLAYAYFGGYRLKVSPLRPRRAQHESAKDGGVQPH
EQLPSFLGAHDMQELQLLQSNQSKSLDSSKHLVTRKPDCRMETCFDFTRC
YDRFLVYIYPPEPLNSLGAAPPTSANYQKILTAIQESRYYTSDPTAACLF
VLGIDTLDRDSLSEDYVRNVPSRLARLPYWNNGRNHIIFNLYSGTWPDYA
ENSLGFDAGEAILAKASMGVLQLRHGFDVSIPLFHKQFPLRAGATGTVQS
NNFPANKKYLLAFKGKRYVHGIGSETRNSLFHLHNGRDMVLVTTCRHGKS
WRELQDNRCDEDNREYDRYDYETLLQNSTFCLVPRGRRLGSFRFLEALQA
GCIPVLLSNAWVLPFESKIDWKQAAIWADERLLLQVPDIVRSIPAERIFA
LRQQTQVLWERYFGSIEKIVFTTFEIIRERLPDYPVRSSLVWNSSPGALL
TLPTFADSSRYMPFLLNSMGAEPRHNYTAVIYVQIGAALGPNAALYKLVR
TITKSQFVERILVLWAADRPLPLKKRWPPTSHIPLHVISLGGSTRSQGAG
PTSQTTEGRPSISQRFLPYDEIQTDAVLSLDEDAILNTDELDFAYTVWRD
FPERIVGYPARAHFWDDSKNAWGYTSKWTNYYSIVLTGAAFYHRYYNYLY
TNWLSLLLLKTVQQSSNCEDILMNLLVSHVTRKPPIKVTQRKGYKDRETG
RSPWNDPDHFIQRQSCLNTFAAVFGYMPLIRSNLRMDPMLYRDPVSNLRK
KYRQIELVGS*

BS15572.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
ttv-PB 760 CG10117-PB 1..760 1..760 4043 100 Plus
ttv-PA 760 CG10117-PA 1..760 1..760 4043 100 Plus
ttv-PC 299 CG10117-PC 1..299 462..760 1597 100 Plus
Ext2-PB 717 CG8433-PB 58..714 56..755 883 32.6 Plus
botv-PA 972 CG15110-PA 707..967 470..751 474 37.1 Plus