Clone Sequence Records
BS15574.complete Sequence
2018 bp assembled on 2009-12-07
GenBank Submission: KX805888
> BS15574.complete
GAAGTTATCATTCGACATGAGCGAATCTCTTGATAAGACCACCAGCCCGA
GCTCGGCCAGTTCCAGGGCCACGCCCCCGGGAACGCAGGATGCGGATGAG
GGCCACGACGTGAGCGATACCTTCTACACGAGCCAGCGCAAGAAGGGCAG
CCACGTATTTCGGGTGCGCCTTGACGCCACAGGATTCACCCTGCAGCGGG
AGTCGCCGGGCGGTAGCATTGTTAAGGAGCAACATGTCCGCATATCGGAC
ATTGTGGGTGCCCGCTGCATGCGGCCCAAGAAGAGCCGGCGCCTGGCGAT
GTCGGGCGCCTGTGCGTGCAGCTCCGGTAATCCCAATTCGCCAGCCATCT
CGGCGTCCGGCGATCACCATCGCCCTGCCACCACACCAAGCAAATGCAGC
ACCAATAGTCGGGATAATATTCCTTCGGATGGCGGCGATGTCAGCGCGTT
TCTCTACGTTTTTGCCTATGTTCTGAAGAAGAGGAGCCTGCGGTCGGAGT
TGCACCGGGAGCGAACGGTGCTCACTCTGCGCTTCCGGTCGTTCGACACC
TTCGAGGACAACATGAGGGAGGCGGATCGTTGGTACAGATCCCTTCGCTG
GCAGTTGCATCGCACGCTGGAGGAGATCTTTGTGGCGCCGACGGTGGATG
AGCGACGCCGTCGAGTGCTTGTGCTGTTGAATCCCAAATCCGGTTCCGGT
GACGCTCGTGAGGTCTTCAACATGCACGTGACGCCGGTGCTCAACGAGGC
CGAGGTGCCCTACGACCTGTATGTAACCAAGCATTCCAACTTTGCCATCG
AGTTCTTGAGCACCAGGTGCCTGGACGCCTGGTGCTGCGTGGTGGCTGTC
GGCGGAGACGGTCTCTTCCACGAGATAGTCAATGGACTGCTGCAGCGCCA
GGACTGGGCCCACGTCCTGCCTCATCTGGCACTGGGAATCATTCCTTGCG
GCTCCGGAAATGGATTGGCCCGCTCCATTGCCCATTGTTACAACGAACCA
TACTTCAGCAAGCCAGTGCTAGGAGCTGCTCTGACCGTAATCAGTGGACG
CAGTTCACCCATGGACGTGGTCCGGGTGCAGCTGCAGAGTCGCTCCCTCT
ACTCCTTCCTGTCCATCGGCTGGGGTCTGATCTCGGACGTGGACATCGAG
AGCGAGCGCATTCGCATGTTGGGCTACCAGCGCTTCACCGTGTGGACCCT
CTACCGTCTGGTGAATCTGCGCACCTACAACGGCCGAATCAGCTATCTTC
TGACGGACCATGAGGTGTCCTCAACCCATAGCGCTACCGGTTATGCTGCC
CAGCGGAGAATGCAGAGCAGCCGTAGCTGCAACACGCACATCGACATGCT
AAATGGGCCGGCGCCCATCTATCATTCCAGTGCCGAGTACCTGCCACAGG
AGTTTGCGGACGTGATCTCCCTGGAGACGTCCATCAATCAGTCGTTCCGC
TCGAGGTGCGACAGCTGGTTGTCGGGGGGATCGCGGCGCAGCTTTTACTA
TTCCATATCGGAGAGCATCTACCACAGTCTGGCGGATGAGAGCGAGTTCG
CCGGCCTGGCGGCCGCCTCGCTGGAAAACCGGCAGCAGAACTACGGTCCG
GCAAGCGAGCTGCCGGATCTGAACGAACCGCTGTCCGAGGATCAGGGTTG
GCTGGTGGAGGAGGGCGAGTTCGTCATGATGCACGCCGTTTACCAGACCC
ATCTGGGCATCGACTGTCATTTTGCGCCCAAGGCCCAGCTGAACGACGGC
ACCATCTACCTGATCCTCATACGCGCCGGCATCAGCCGCCCGCACCTGCT
GAGCTTCCTCTACAACATGAGCTCCGGCACTCACCTGCCGGAGTCGCACG
ACGACCATGTGAAGGTGCTGCCAGTGCGAGCATTCCGCCTGGAGCCCTAC
GACAATCACGGCATCATCACGGTCGACGGCGAGCGCGTCGAGTTCGGGCC
CCTCCAAGCTGAGGTCCTGCCGGGCATAGCCCGCGTCATGGTGCCCAAGT
AGAAGCTTTCTAGACCAT
BS15574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-RA | 1986 | CG32484-PA | 1..1986 | 17..2002 | 9930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-RA | 2594 | CG32484-RA | 99..2089 | 12..2002 | 9940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3048646..3049654 | 994..2002 | 5045 | 100 | Plus |
| 3L | 28110227 | 3L | 3047185..3048166 | 12..993 | 4895 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:14:37 has no hits.
BS15574.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:20 Download gff for
BS15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 235..2220 | 17..2002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:33 Download gff for
BS15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 104..2089 | 17..2002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:08 Download gff for
BS15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 235..2220 | 17..2002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:10 Download gff for
BS15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 104..2089 | 17..2002 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:10 Download gff for
BS15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3047190..3048166 | 17..993 | 100 | -> | Plus |
| 3L | 3048646..3049654 | 994..2002 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:33 Download gff for
BS15574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3047190..3048166 | 17..993 | 100 | -> | Plus |
| arm_3L | 3048646..3049654 | 994..2002 | 100 | | Plus |
BS15574.3prime Sequence
814 bp (766 high quality bases) assembled on 2006-12-21
> BS15574.3prime
ATGGTCTAGAAAGCTTCTACTTGGGCACCATGACGCGGGCTATGCCCGGC
AGGACCTCAGCTTGGAGGGGCCCGAACTCGACGCGCTCGCCGTCGACCGT
GATGATGCCGTGATTGTCGTAGGGCTCCAGGCGGAATGCTCGCACTGGCA
GCACCTTCACATGGTCGTCGTGCGACTCCGGCAGGTGAGTGCCGGAGCTC
ATGTTGTAGAGGAAGCTCAGCAGGTGCGGGCGGCTGATGCCGGCGCGTAT
GAGGATCAGGTAGATGGTGCCGTCGTTCAGCTGGGCCTTGGGCGCAAAAT
GACAGTCGATGCCCAGATGGGTCTGGTAAACGGCGTGCATCATGACGAAC
TCGCCCTCCTCCACCAGCCAACCCTGATCCTCGGACAGCGGTTCGTTCAG
ATCCGGCAGCTCGCTTGCCGGACCGTAGTTCTGCTGCCGGTTTTCCAGCG
AGGCGGCCGCCAGGCCGGCGAACTCGCTCTCATCCGCCAGACTGTGGTAG
ATGCTCTCCGATATGGAATAGTAAAAGCTGCGCCGCGATCCCCCCGACAA
CCAGCTGTCGCACCTCGAGCGGAACGACTGATTGATGGACGTCTCCAGGG
AGATCACGTCCGCAAACTCCTGTGGCAGGTACTCGGCACTGGAATGATAG
ATGGGCGCCGGCCCATTTAGCATGTCGATGTGCGTGTTGCAGCTACGGCT
GCTCTGCATTCTCCGCTGGGCAGCATAACCGGTAGCGCTATGGGTTGAGG
ACACCTCATGGTCCGTCAGAAGATAGCTGATTCGGCCGTTGTAGGTGCGC
AGATTCACCAGACG
BS15574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32484-PA | 1986 | Sk2-RA | 1189..1986 | 814..17 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-RA | 2594 | CG32484-RA | 1292..2089 | 814..17 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3048857..3049654 | 814..17 | 3990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:24:17 has no hits.
BS15574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:48 Download gff for
BS15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32484-PA | 1189..1986 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:48 Download gff for
BS15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32484-PA | 1189..1986 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:29:07 Download gff for
BS15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 1292..2101 | 8..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:02 Download gff for
BS15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 1292..2101 | 8..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:02 Download gff for
BS15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3048857..3049666 | 8..814 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:29:07 Download gff for
BS15574.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3048857..3049666 | 8..814 | 99 | | Minus |
BS15574.5prime Sequence
910 bp (738 high quality bases) assembled on 2006-12-21
> BS15574.5prime
GAAGTTATCATTCGACATGAGCGAATCTCTTGATAAGACCACCAGCCCGA
GCTCGGCCAGTTCCAGGGCCACGCCCCCGGGAACGCAGGATGCGGATGAG
GGCCACGACGTGAGCGATACCTTCTACACGAGCCAGCGCAAGAAGGGCAG
CCACGTATTTCGGGTGCGCCTTGACGCCACAGGATTCACCCTGCAGCGGG
AGTCGCCGGGCGGTAGCATTGTTAAGGAGCAACATGTCCGCATATCGGAC
ATTGTGGGTGCCCGCTGCATGCGGCCCAAGAAGAGCCGGCGCCTGGCGAT
GTCGGGCGCCTGTGCGTGCAGCTCCGGTAATCCCAATTCGCCAGCCATCT
CGGCGTCCGGCGATCACCATCGCCCTGCCACCACACCAAGCAAATGCAGC
ACCAATAGTCGGGATAATATTCCTTCGGATGGCGGCGATGTCAGCGCGTT
TCTCTACGTTTTTGCCTATGTTCTGAAGAAGAGGAGCCTGCGGTCGGAGT
TGCACCGGGAGCGAACGGTGCTCACTCTGCGCTTCCGGTCGTTCGACACC
TTCGAGGACAACATGAGGGAGGCGGATCGTTGGTACAGATCCCTTCGCTG
GCAGTTGCATCGCACGCTGGAGGAGATCTTTGTGGCGCCGACGGTGGATG
AGCGACGCCGTCGAGTGCTTGTGCTGTTGAATCCCAAATCCGGTTCCGGT
GACGCTCGTGAGGTCTTCAACATGCACGTGACGCCGGTGCTNCACGAGGC
CGAGGTGCCCTACGACCTGTATGTAACCAAGCATTCCAACTTTGCCATCG
AGTTCTTGAGCACCAGGTGCCTGGACGCCTGGTGCTGCGTGGTGGCTGTC
GGCGGAGACGGTCTCTTCCACGAGATAGGTCATGGACTGCTGCAGCGCCA
GGACTGGGCC
BS15574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32484-PA | 1986 | Sk2-RA | 1..862 | 17..878 | 4266 | 99.7 | Plus |
| CG32484-PA | 1986 | Sk2-RA | 866..894 | 882..910 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-RA | 2594 | CG32484-RA | 99..997 | 12..910 | 4409 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3047185..3048083 | 12..910 | 4409 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-01-31 03:25:32 has no hits.
BS15574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:49 Download gff for
BS15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32484-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:08:49 Download gff for
BS15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32484-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:47:48 Download gff for
BS15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 96..997 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:46 Download gff for
BS15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk2-RA | 96..997 | 9..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:46 Download gff for
BS15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3047182..3048083 | 9..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:47:48 Download gff for
BS15574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3047182..3048083 | 9..910 | 99 | | Plus |
BS15574.pep Sequence
Translation from 16 to 2001
> BS15574.pep
MSESLDKTTSPSSASSRATPPGTQDADEGHDVSDTFYTSQRKKGSHVFRV
RLDATGFTLQRESPGGSIVKEQHVRISDIVGARCMRPKKSRRLAMSGACA
CSSGNPNSPAISASGDHHRPATTPSKCSTNSRDNIPSDGGDVSAFLYVFA
YVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADRWYRSLRWQLHRT
LEEIFVAPTVDERRRRVLVLLNPKSGSGDAREVFNMHVTPVLNEAEVPYD
LYVTKHSNFAIEFLSTRCLDAWCCVVAVGGDGLFHEIVNGLLQRQDWAHV
LPHLALGIIPCGSGNGLARSIAHCYNEPYFSKPVLGAALTVISGRSSPMD
VVRVQLQSRSLYSFLSIGWGLISDVDIESERIRMLGYQRFTVWTLYRLVN
LRTYNGRISYLLTDHEVSSTHSATGYAAQRRMQSSRSCNTHIDMLNGPAP
IYHSSAEYLPQEFADVISLETSINQSFRSRCDSWLSGGSRRSFYYSISES
IYHSLADESEFAGLAAASLENRQQNYGPASELPDLNEPLSEDQGWLVEEG
EFVMMHAVYQTHLGIDCHFAPKAQLNDGTIYLILIRAGISRPHLLSFLYN
MSSGTHLPESHDDHVKVLPVRAFRLEPYDNHGIITVDGERVEFGPLQAEV
LPGIARVMVPK*
BS15574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk2-PA | 661 | CG32484-PA | 1..661 | 1..661 | 3463 | 100 | Plus |
| Sk1-PA | 641 | CG1747-PA | 18..636 | 7..658 | 1195 | 41.1 | Plus |
| Sk1-PB | 641 | CG1747-PB | 18..636 | 7..658 | 1195 | 41.1 | Plus |
| Cerk-PB | 687 | CG16708-PB | 24..596 | 12..628 | 218 | 23.8 | Plus |
| Cerk-PA | 687 | CG16708-PA | 24..596 | 12..628 | 218 | 23.8 | Plus |
