Clone BS15578 Report

Search the DGRC for BS15578

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:155
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptRhp-RA
Protein status:BS15578.pep: full length peptide match
Sequenced Size:2189

Clone Sequence Records

BS15578.complete Sequence

2189 bp assembled on 2009-12-07

GenBank Submission: KX800690

> BS15578.complete
GAAGTTATCAGTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGG
TGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCC
TTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAA
ACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCC
GCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAA
CTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCA
ACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATC
AGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAG
GAAACCAAGGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGA
ACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGA
CGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTG
GCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTT
CTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGC
TCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGC
ACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGA
TCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGG
CCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCG
ATGGACCTGAAGCCACAGGTCCTGGACGTGCTCGTTTCCCTGATGCTTTC
CCAGGCACGAGAATGCCTCTTTGAGAAGCTTCAGCTGCAGATCGAGGCGA
TGAGCCACGATTGCCAGGCGTTTCGGGATCTGGCTGGCGAGGCTGCTCAA
ATATCGCACGAGTACAATGAGATGCACAAGAATATCCAGGCGAACGATAC
GCACACCTATCTTCCGGAATGCTGGGCCGGTCTAGTGCCAGTCAAGGCGG
AACTCTACAAAGCATTCGCACATTTCTACAAGGCACGGAGCATAGATGCG
ACAGACGAGCTGAAGGCATCAAAGTCAAGTCAAAAGAACCAAGAATCCTT
CATCGGCAATTCCCAGGAGGTGGAGCGCATCACCACAGCCGATTATGGAG
CCAGCGATGAGGCGTCCACCTCCATTGCCAACAAACTGGCCCACTTAAAG
GAGGCGCTGGCCAGTATCGAGGAAGCCCAGCGATTGCAGCGGATGTGTCG
GTTCTTGAAGAACAAGGCATCACTGACTGAAGTCATGAAGGAGGTGCACT
CCAAATCGCAGGAGGAGCTCGAGAAGTTCAGACTGCAAGCTTCAGCCAAA
AATATCGAAGATGGCGATCTTCTAGAGCGATCGGTAGAAGCATCTTCGAA
GTTCACGTTATCCCTGACCGGACCCGACTTCACATCGCACAAGGTTAAGG
ATCCCTTCAAGCGCCTCGGCCCGATTGCAATATTCTCGGCGAGACGCCAC
TGGACAGCGCCCAGATGTGTGCGTCTCCAGAAAGGTTCCTCCCTGTATCA
CAGCGTGCCCAGCAATGACAACAAGTGCCCATTGGATAACGATGATGACG
AGGAGCACGATGGTGGATACAATCTGTACAAGGAGGAGTTTGAGAACTTT
GGCTTCCATGTGCGCGGCGATGCTCCGGTGATCATTGCCCACGTTGAGAT
TAATTCTTTGGCAGACCTTGGCGGCATCAAGGAGGGAGACTTCATAGTCG
AGATAGCCGGCGTGGACGTGAAGTGGTACTCCCATCAGCAGGTGGTGCAG
CTCATACAATCCTGCGGCTCTACACTCGAGCTGAGAGTGATAACGCCCAT
GGATCGCAACTACTTGAAGCCATTGTCGTCGAAGGGCTCATTATCAACGC
TATCGGCGGCCAGTTCATCGGGCATTTCATCCGGATTTCCCAGTCCCACA
AGTATTGCGGCCAAGCCCAAGCTCCACCTGAAAACATCCTCTAGTTCGCG
ACCCGCTGGCAGCGTTTCATCCAGTTCGTGGAATCCGTTTCGGCGAACGC
CTAGCTTAGCTAAAATATTTTAAAAGCTTTCTAGACCAT

BS15578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-RA 2157 CG8497-PA 1..2157 17..2173 10785 100 Plus
Rhp-RB 2157 CG8497-PB 1..2157 17..2173 10785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-RA 2381 CG8497-RA 104..2261 16..2173 10790 100 Plus
Rhp-RB 2536 CG8497-RB 259..2416 16..2173 10790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15791460..15791902 513..955 2215 100 Plus
X 23542271 X 15792710..15793037 1489..1816 1640 100 Plus
X 23542271 X 15792208..15792457 1111..1360 1250 100 Plus
X 23542271 X 15793307..15793512 1968..2173 1030 100 Plus
X 23542271 X 15791241..15791397 359..515 785 100 Plus
X 23542271 X 15791988..15792144 956..1112 785 100 Plus
X 23542271 X 15793092..15793244 1817..1969 765 100 Plus
X 23542271 X 15792510..15792647 1353..1490 675 99.3 Plus
X 23542271 X 15790977..15791106 231..360 650 100 Plus
X 23542271 X 15790742..15790860 115..233 595 100 Plus
X 23542271 X 15796579..15796693 1192..1306 515 96.5 Plus
X 23542271 X 15790289..15790389 16..116 505 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:27:43 has no hits.

BS15578.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:16 Download gff for BS15578.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RA 109..2263 17..2171 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:43 Download gff for BS15578.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 260..2414 17..2171 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:52 Download gff for BS15578.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RA 109..2263 17..2171 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:54 Download gff for BS15578.complete
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 260..2414 17..2171 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:54 Download gff for BS15578.complete
Subject Subject Range Query Range Percent Splice Strand
X 15793309..15793510 1970..2171 100   Plus
X 15792518..15792647 1361..1490 100 -> Plus
X 15790290..15790388 17..115 100 -> Plus
X 15790743..15790859 116..232 100 -> Plus
X 15790979..15791106 233..360 100 -> Plus
X 15791243..15791396 361..514 100 -> Plus
X 15791462..15791902 515..955 100 -> Plus
X 15791988..15792144 956..1112 100 -> Plus
X 15792210..15792457 1113..1360 100 -> Plus
X 15792712..15793037 1491..1816 100 -> Plus
X 15793092..15793244 1817..1969 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:43 Download gff for BS15578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15686551..15686680 1361..1490 100 -> Plus
arm_X 15686745..15687070 1491..1816 100 -> Plus
arm_X 15687125..15687277 1817..1969 100 -> Plus
arm_X 15684323..15684421 17..115 100 -> Plus
arm_X 15684776..15684892 116..232 100 -> Plus
arm_X 15685012..15685139 233..360 100 -> Plus
arm_X 15685276..15685429 361..514 100 -> Plus
arm_X 15685495..15685935 515..955 100 -> Plus
arm_X 15686021..15686177 956..1112 100 -> Plus
arm_X 15686243..15686490 1113..1360 100 -> Plus
arm_X 15687342..15687543 1970..2171 100   Plus

BS15578.3prime Sequence

838 bp (716 high quality bases) assembled on 2006-12-21

> BS15578.3prime
ATGGTCTAGAAAGCTTTTAACATATTTTAGCTAAGCTAGGCGTTCGCCGA
AACGGATTCCACGAACTGGATGAAACGCTGCCAGCGGGTCGCGAACTAGA
GGATGTTTTCAGGTGGAGCTTGGGCTTGGCCGCAATACTTGTGGGACTGG
GAAATCCGGATGAAATGCCCGATGAACTGGCCGCCGATAGCGTTGATAAT
GAGCCCTTCGACGACAATGGGCTTCAAGTAGTTGCGATCCATGGGCGTTA
TCACTCTCAGCTCGAGTGTAGAGCCGCAGGATTGTATGAGCTGCACCACC
TGCTGATGGGAGTACCACTTCACGTCCACGCCGGCTATCTCGACTATGAA
GTCTCCCTCCTTGATGCCGCCAAGGTCTGCCAAAGAATTAATCTCAACGT
GGGCAATGATCACCGGAGCATCGCCGCGCACATGGAAGCCAAAGTTCTCA
AACTCCTCCTTGTACAGATTGTATCCACCATCGTGCTCCTCGTCATCATC
GTTATCCAATGGGCACTTGTTGTCATTGCTGGGCACGCTGTGATACAGGG
AGGAACCTTTCTGGAGACGCACACATCTGGGCGCTGTCCAGTGGCGTCTC
GCCGAGAATATTGCAATCGGGCCGAGGCGCTTGAAGGGATCCTTAACCTT
GTGCGATGTGAAGTCGGGTCCGGTCAGGGATAACGTGAACTTCGAAGATG
CTTCTACCGATCGCTCTAGAAGATCGCCATCTTCGATATTTTTGGCTGAA
GCTTGCAGTCTGAACTTCTCGAGCTCCTCCTGCGATTTGGAGTGCACCTC
CTTCATGACTTCAGTCAGTGATGCCTTGTTCTTCAAGA

BS15578.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8497-PB 2157 Rhp-RB 1337..1955 838..220 3095 100 Minus
CG8497-PA 2157 Rhp-RA 1337..1955 838..220 3095 100 Minus
CG8497-PB 2157 Rhp-RB 1954..2152 220..22 995 100 Minus
CG8497-PA 2157 Rhp-RA 1954..2152 220..22 995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-RA 2381 CG8497-RA 1441..2261 838..17 4070 99.8 Minus
Rhp-RB 2536 CG8497-RB 1596..2416 838..17 4070 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15792710..15793037 702..375 1640 100 Minus
X 23542271 X 15793309..15793512 220..17 1005 99.5 Minus
X 23542271 X 15793092..15793244 374..222 765 100 Minus
X 23542271 X 15792510..15792647 838..701 675 99.3 Minus
Blast to na_te.dros performed on 2015-02-11 15:52:40 has no hits.

BS15578.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:56 Download gff for BS15578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8497-PA 1338..2157 17..837 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:00 Download gff for BS15578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8497-PA 1338..2157 17..837 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:49:37 Download gff for BS15578.3prime
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 1597..2425 9..837 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:55 Download gff for BS15578.3prime
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 1597..2425 9..837 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:55 Download gff for BS15578.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15792511..15792647 701..837 99 -> Minus
X 15792712..15793037 375..700 100 -> Minus
X 15793092..15793244 221..374 99 -> Minus
X 15793309..15793521 9..220 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:49:37 Download gff for BS15578.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15687125..15687277 221..374 99 -> Minus
arm_X 15687342..15687554 9..220 97   Minus
arm_X 15686544..15686680 701..837 99 -> Minus
arm_X 15686745..15687070 375..700 100 -> Minus

BS15578.5prime Sequence

909 bp (796 high quality bases) assembled on 2006-12-21

> BS15578.5prime
GAAGTTATCATTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGG
TGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCC
TTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAA
ACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCC
GCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAA
CTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCA
ACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATC
AGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAG
GAAACCAAGGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGA
ACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGA
CGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTG
GCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTT
CTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGC
TCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGC
ACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGA
TCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGG
CCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCG
ATGGACCCTGAGCCACAGGTCCTGGACGTGCTCGTTTCCCTGATGCTTTC
CCCAGCACG

BS15578.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8497-PB 2157 Rhp-RB 1..841 17..857 4205 100 Plus
CG8497-PA 2157 Rhp-RA 1..841 17..857 4205 100 Plus
CG8497-PB 2157 Rhp-RB 845..886 861..902 210 100 Plus
CG8497-PA 2157 Rhp-RA 845..886 861..902 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-RA 2381 CG8497-RA 104..997 16..909 4395 99.6 Plus
Rhp-RB 2536 CG8497-RB 259..1152 16..909 4395 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15791460..15791856 513..909 1910 98.7 Plus
X 23542271 X 15791241..15791397 359..515 785 100 Plus
X 23542271 X 15790977..15791106 231..360 650 100 Plus
X 23542271 X 15790742..15790860 115..233 595 100 Plus
X 23542271 X 15790289..15790389 16..116 505 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:59:15 has no hits.

BS15578.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:57 Download gff for BS15578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8497-PA 1..893 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:01 Download gff for BS15578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8497-PA 1..893 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:22:18 Download gff for BS15578.5prime
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 249..1152 7..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:24 Download gff for BS15578.5prime
Subject Subject Range Query Range Percent Splice Strand
Rhp-RB 249..1152 7..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:24 Download gff for BS15578.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15790279..15790388 7..115 96 -> Plus
X 15790743..15790859 116..232 100 -> Plus
X 15790979..15791106 233..360 100 -> Plus
X 15791243..15791396 361..514 100 -> Plus
X 15791462..15791856 515..909 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:22:18 Download gff for BS15578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15684312..15684421 7..115 96 -> Plus
arm_X 15684776..15684892 116..232 100 -> Plus
arm_X 15685012..15685139 233..360 100 -> Plus
arm_X 15685276..15685429 361..514 100 -> Plus
arm_X 15685495..15685889 515..909 98   Plus

BS15578.pep Sequence

Translation from 16 to 2172

> BS15578.pep
MDEKEHELSTRVVKNEENEDDEKLNELSFCFVRGSDPRAATCRSKLQNRR
CKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQLLKEQ
LAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEE
PSMYIDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDR
NLGVYFEWYDSLTGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTER
GLDLAVDSFLRAAGVFRHIYDTFTNAPSMDLKPQVLDVLVSLMLSQAREC
LFEKLQLQIEAMSHDCQAFRDLAGEAAQISHEYNEMHKNIQANDTHTYLP
ECWAGLVPVKAELYKAFAHFYKARSIDATDELKASKSSQKNQESFIGNSQ
EVERITTADYGASDEASTSIANKLAHLKEALASIEEAQRLQRMCRFLKNK
ASLTEVMKEVHSKSQEELEKFRLQASAKNIEDGDLLERSVEASSKFTLSL
TGPDFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSLYHSVPSN
DNKCPLDNDDDEEHDGGYNLYKEEFENFGFHVRGDAPVIIAHVEINSLAD
LGGIKEGDFIVEIAGVDVKWYSHQQVVQLIQSCGSTLELRVITPMDRNYL
KPLSSKGSLSTLSAASSSGISSGFPSPTSIAAKPKLHLKTSSSSRPAGSV
SSSSWNPFRRTPSLAKIF*

BS15578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rhp-PA 718 CG8497-PA 1..718 1..718 3695 100 Plus
Rhp-PB 718 CG8497-PB 1..718 1..718 3695 100 Plus
ALiX-PA 836 CG12876-PA 9..296 127..392 164 21.5 Plus