Clone Sequence Records
BS15578.complete Sequence
2189 bp assembled on 2009-12-07
GenBank Submission: KX800690
> BS15578.complete
GAAGTTATCAGTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGG
TGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCC
TTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAA
ACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCC
GCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAA
CTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCA
ACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATC
AGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAG
GAAACCAAGGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGA
ACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGA
CGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTG
GCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTT
CTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGC
TCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGC
ACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGA
TCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGG
CCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCG
ATGGACCTGAAGCCACAGGTCCTGGACGTGCTCGTTTCCCTGATGCTTTC
CCAGGCACGAGAATGCCTCTTTGAGAAGCTTCAGCTGCAGATCGAGGCGA
TGAGCCACGATTGCCAGGCGTTTCGGGATCTGGCTGGCGAGGCTGCTCAA
ATATCGCACGAGTACAATGAGATGCACAAGAATATCCAGGCGAACGATAC
GCACACCTATCTTCCGGAATGCTGGGCCGGTCTAGTGCCAGTCAAGGCGG
AACTCTACAAAGCATTCGCACATTTCTACAAGGCACGGAGCATAGATGCG
ACAGACGAGCTGAAGGCATCAAAGTCAAGTCAAAAGAACCAAGAATCCTT
CATCGGCAATTCCCAGGAGGTGGAGCGCATCACCACAGCCGATTATGGAG
CCAGCGATGAGGCGTCCACCTCCATTGCCAACAAACTGGCCCACTTAAAG
GAGGCGCTGGCCAGTATCGAGGAAGCCCAGCGATTGCAGCGGATGTGTCG
GTTCTTGAAGAACAAGGCATCACTGACTGAAGTCATGAAGGAGGTGCACT
CCAAATCGCAGGAGGAGCTCGAGAAGTTCAGACTGCAAGCTTCAGCCAAA
AATATCGAAGATGGCGATCTTCTAGAGCGATCGGTAGAAGCATCTTCGAA
GTTCACGTTATCCCTGACCGGACCCGACTTCACATCGCACAAGGTTAAGG
ATCCCTTCAAGCGCCTCGGCCCGATTGCAATATTCTCGGCGAGACGCCAC
TGGACAGCGCCCAGATGTGTGCGTCTCCAGAAAGGTTCCTCCCTGTATCA
CAGCGTGCCCAGCAATGACAACAAGTGCCCATTGGATAACGATGATGACG
AGGAGCACGATGGTGGATACAATCTGTACAAGGAGGAGTTTGAGAACTTT
GGCTTCCATGTGCGCGGCGATGCTCCGGTGATCATTGCCCACGTTGAGAT
TAATTCTTTGGCAGACCTTGGCGGCATCAAGGAGGGAGACTTCATAGTCG
AGATAGCCGGCGTGGACGTGAAGTGGTACTCCCATCAGCAGGTGGTGCAG
CTCATACAATCCTGCGGCTCTACACTCGAGCTGAGAGTGATAACGCCCAT
GGATCGCAACTACTTGAAGCCATTGTCGTCGAAGGGCTCATTATCAACGC
TATCGGCGGCCAGTTCATCGGGCATTTCATCCGGATTTCCCAGTCCCACA
AGTATTGCGGCCAAGCCCAAGCTCCACCTGAAAACATCCTCTAGTTCGCG
ACCCGCTGGCAGCGTTTCATCCAGTTCGTGGAATCCGTTTCGGCGAACGC
CTAGCTTAGCTAAAATATTTTAAAAGCTTTCTAGACCAT
BS15578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-RA | 2157 | CG8497-PA | 1..2157 | 17..2173 | 10785 | 100 | Plus |
Rhp-RB | 2157 | CG8497-PB | 1..2157 | 17..2173 | 10785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-RA | 2381 | CG8497-RA | 104..2261 | 16..2173 | 10790 | 100 | Plus |
Rhp-RB | 2536 | CG8497-RB | 259..2416 | 16..2173 | 10790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15791460..15791902 | 513..955 | 2215 | 100 | Plus |
X | 23542271 | X | 15792710..15793037 | 1489..1816 | 1640 | 100 | Plus |
X | 23542271 | X | 15792208..15792457 | 1111..1360 | 1250 | 100 | Plus |
X | 23542271 | X | 15793307..15793512 | 1968..2173 | 1030 | 100 | Plus |
X | 23542271 | X | 15791241..15791397 | 359..515 | 785 | 100 | Plus |
X | 23542271 | X | 15791988..15792144 | 956..1112 | 785 | 100 | Plus |
X | 23542271 | X | 15793092..15793244 | 1817..1969 | 765 | 100 | Plus |
X | 23542271 | X | 15792510..15792647 | 1353..1490 | 675 | 99.3 | Plus |
X | 23542271 | X | 15790977..15791106 | 231..360 | 650 | 100 | Plus |
X | 23542271 | X | 15790742..15790860 | 115..233 | 595 | 100 | Plus |
X | 23542271 | X | 15796579..15796693 | 1192..1306 | 515 | 96.5 | Plus |
X | 23542271 | X | 15790289..15790389 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:27:43 has no hits.
BS15578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:16 Download gff for
BS15578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RA | 109..2263 | 17..2171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:43 Download gff for
BS15578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 260..2414 | 17..2171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:52 Download gff for
BS15578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RA | 109..2263 | 17..2171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:54 Download gff for
BS15578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 260..2414 | 17..2171 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:54 Download gff for
BS15578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15793309..15793510 | 1970..2171 | 100 | | Plus |
X | 15792518..15792647 | 1361..1490 | 100 | -> | Plus |
X | 15790290..15790388 | 17..115 | 100 | -> | Plus |
X | 15790743..15790859 | 116..232 | 100 | -> | Plus |
X | 15790979..15791106 | 233..360 | 100 | -> | Plus |
X | 15791243..15791396 | 361..514 | 100 | -> | Plus |
X | 15791462..15791902 | 515..955 | 100 | -> | Plus |
X | 15791988..15792144 | 956..1112 | 100 | -> | Plus |
X | 15792210..15792457 | 1113..1360 | 100 | -> | Plus |
X | 15792712..15793037 | 1491..1816 | 100 | -> | Plus |
X | 15793092..15793244 | 1817..1969 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:43 Download gff for
BS15578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15686551..15686680 | 1361..1490 | 100 | -> | Plus |
arm_X | 15686745..15687070 | 1491..1816 | 100 | -> | Plus |
arm_X | 15687125..15687277 | 1817..1969 | 100 | -> | Plus |
arm_X | 15684323..15684421 | 17..115 | 100 | -> | Plus |
arm_X | 15684776..15684892 | 116..232 | 100 | -> | Plus |
arm_X | 15685012..15685139 | 233..360 | 100 | -> | Plus |
arm_X | 15685276..15685429 | 361..514 | 100 | -> | Plus |
arm_X | 15685495..15685935 | 515..955 | 100 | -> | Plus |
arm_X | 15686021..15686177 | 956..1112 | 100 | -> | Plus |
arm_X | 15686243..15686490 | 1113..1360 | 100 | -> | Plus |
arm_X | 15687342..15687543 | 1970..2171 | 100 | | Plus |
BS15578.3prime Sequence
838 bp (716 high quality bases) assembled on 2006-12-21
> BS15578.3prime
ATGGTCTAGAAAGCTTTTAACATATTTTAGCTAAGCTAGGCGTTCGCCGA
AACGGATTCCACGAACTGGATGAAACGCTGCCAGCGGGTCGCGAACTAGA
GGATGTTTTCAGGTGGAGCTTGGGCTTGGCCGCAATACTTGTGGGACTGG
GAAATCCGGATGAAATGCCCGATGAACTGGCCGCCGATAGCGTTGATAAT
GAGCCCTTCGACGACAATGGGCTTCAAGTAGTTGCGATCCATGGGCGTTA
TCACTCTCAGCTCGAGTGTAGAGCCGCAGGATTGTATGAGCTGCACCACC
TGCTGATGGGAGTACCACTTCACGTCCACGCCGGCTATCTCGACTATGAA
GTCTCCCTCCTTGATGCCGCCAAGGTCTGCCAAAGAATTAATCTCAACGT
GGGCAATGATCACCGGAGCATCGCCGCGCACATGGAAGCCAAAGTTCTCA
AACTCCTCCTTGTACAGATTGTATCCACCATCGTGCTCCTCGTCATCATC
GTTATCCAATGGGCACTTGTTGTCATTGCTGGGCACGCTGTGATACAGGG
AGGAACCTTTCTGGAGACGCACACATCTGGGCGCTGTCCAGTGGCGTCTC
GCCGAGAATATTGCAATCGGGCCGAGGCGCTTGAAGGGATCCTTAACCTT
GTGCGATGTGAAGTCGGGTCCGGTCAGGGATAACGTGAACTTCGAAGATG
CTTCTACCGATCGCTCTAGAAGATCGCCATCTTCGATATTTTTGGCTGAA
GCTTGCAGTCTGAACTTCTCGAGCTCCTCCTGCGATTTGGAGTGCACCTC
CTTCATGACTTCAGTCAGTGATGCCTTGTTCTTCAAGA
BS15578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8497-PB | 2157 | Rhp-RB | 1337..1955 | 838..220 | 3095 | 100 | Minus |
CG8497-PA | 2157 | Rhp-RA | 1337..1955 | 838..220 | 3095 | 100 | Minus |
CG8497-PB | 2157 | Rhp-RB | 1954..2152 | 220..22 | 995 | 100 | Minus |
CG8497-PA | 2157 | Rhp-RA | 1954..2152 | 220..22 | 995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-RA | 2381 | CG8497-RA | 1441..2261 | 838..17 | 4070 | 99.8 | Minus |
Rhp-RB | 2536 | CG8497-RB | 1596..2416 | 838..17 | 4070 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15792710..15793037 | 702..375 | 1640 | 100 | Minus |
X | 23542271 | X | 15793309..15793512 | 220..17 | 1005 | 99.5 | Minus |
X | 23542271 | X | 15793092..15793244 | 374..222 | 765 | 100 | Minus |
X | 23542271 | X | 15792510..15792647 | 838..701 | 675 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:52:40 has no hits.
BS15578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:56 Download gff for
BS15578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8497-PA | 1338..2157 | 17..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:00 Download gff for
BS15578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8497-PA | 1338..2157 | 17..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:49:37 Download gff for
BS15578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 1597..2425 | 9..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:55 Download gff for
BS15578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 1597..2425 | 9..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:55 Download gff for
BS15578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15792511..15792647 | 701..837 | 99 | -> | Minus |
X | 15792712..15793037 | 375..700 | 100 | -> | Minus |
X | 15793092..15793244 | 221..374 | 99 | -> | Minus |
X | 15793309..15793521 | 9..220 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:49:37 Download gff for
BS15578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15687125..15687277 | 221..374 | 99 | -> | Minus |
arm_X | 15687342..15687554 | 9..220 | 97 | | Minus |
arm_X | 15686544..15686680 | 701..837 | 99 | -> | Minus |
arm_X | 15686745..15687070 | 375..700 | 100 | -> | Minus |
BS15578.5prime Sequence
909 bp (796 high quality bases) assembled on 2006-12-21
> BS15578.5prime
GAAGTTATCATTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGG
TGGTGAAAAACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCC
TTTTGTTTTGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAA
ACTCCAAAACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCC
GCCTTCGAGCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAA
CTGCGCGACACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCA
ACTGCTGAAGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATC
AGAGCGAAAGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAG
GAAACCAAGGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGA
ACACTACAGCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGA
CGGACACGAGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTG
GCCCTACTTTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTT
CTTTCCGCCGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGC
TCACGGGAGTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGC
ACCCTGTTCAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGA
TCGCACGACGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGG
CCGCCGGGGTCTTTCGTCACATCTACGATACGTTCACGAATGCACCATCG
ATGGACCCTGAGCCACAGGTCCTGGACGTGCTCGTTTCCCTGATGCTTTC
CCCAGCACG
BS15578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8497-PB | 2157 | Rhp-RB | 1..841 | 17..857 | 4205 | 100 | Plus |
CG8497-PA | 2157 | Rhp-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
CG8497-PB | 2157 | Rhp-RB | 845..886 | 861..902 | 210 | 100 | Plus |
CG8497-PA | 2157 | Rhp-RA | 845..886 | 861..902 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-RA | 2381 | CG8497-RA | 104..997 | 16..909 | 4395 | 99.6 | Plus |
Rhp-RB | 2536 | CG8497-RB | 259..1152 | 16..909 | 4395 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15791460..15791856 | 513..909 | 1910 | 98.7 | Plus |
X | 23542271 | X | 15791241..15791397 | 359..515 | 785 | 100 | Plus |
X | 23542271 | X | 15790977..15791106 | 231..360 | 650 | 100 | Plus |
X | 23542271 | X | 15790742..15790860 | 115..233 | 595 | 100 | Plus |
X | 23542271 | X | 15790289..15790389 | 16..116 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:59:15 has no hits.
BS15578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:30:57 Download gff for
BS15578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8497-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:01 Download gff for
BS15578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8497-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:22:18 Download gff for
BS15578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 249..1152 | 7..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:24 Download gff for
BS15578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rhp-RB | 249..1152 | 7..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:24 Download gff for
BS15578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15790279..15790388 | 7..115 | 96 | -> | Plus |
X | 15790743..15790859 | 116..232 | 100 | -> | Plus |
X | 15790979..15791106 | 233..360 | 100 | -> | Plus |
X | 15791243..15791396 | 361..514 | 100 | -> | Plus |
X | 15791462..15791856 | 515..909 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:22:18 Download gff for
BS15578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15684312..15684421 | 7..115 | 96 | -> | Plus |
arm_X | 15684776..15684892 | 116..232 | 100 | -> | Plus |
arm_X | 15685012..15685139 | 233..360 | 100 | -> | Plus |
arm_X | 15685276..15685429 | 361..514 | 100 | -> | Plus |
arm_X | 15685495..15685889 | 515..909 | 98 | | Plus |
BS15578.pep Sequence
Translation from 16 to 2172
> BS15578.pep
MDEKEHELSTRVVKNEENEDDEKLNELSFCFVRGSDPRAATCRSKLQNRR
CKLNKEINKELRLRAGAENLYKATSNRKLRDTVALELSFVNSNLQLLKEQ
LAELNSSVEIYQSESHNGIMPMIPLGLKETKEINFMEPFSDFILEHYSEE
PSMYIDAIADMTDTRQASKTPSRDALGVALLFRYYNTLYYVERRFFPPDR
NLGVYFEWYDSLTGVPSCQRTIAFEKACTLFNLGGIYTQIGARHDRTTER
GLDLAVDSFLRAAGVFRHIYDTFTNAPSMDLKPQVLDVLVSLMLSQAREC
LFEKLQLQIEAMSHDCQAFRDLAGEAAQISHEYNEMHKNIQANDTHTYLP
ECWAGLVPVKAELYKAFAHFYKARSIDATDELKASKSSQKNQESFIGNSQ
EVERITTADYGASDEASTSIANKLAHLKEALASIEEAQRLQRMCRFLKNK
ASLTEVMKEVHSKSQEELEKFRLQASAKNIEDGDLLERSVEASSKFTLSL
TGPDFTSHKVKDPFKRLGPIAIFSARRHWTAPRCVRLQKGSSLYHSVPSN
DNKCPLDNDDDEEHDGGYNLYKEEFENFGFHVRGDAPVIIAHVEINSLAD
LGGIKEGDFIVEIAGVDVKWYSHQQVVQLIQSCGSTLELRVITPMDRNYL
KPLSSKGSLSTLSAASSSGISSGFPSPTSIAAKPKLHLKTSSSSRPAGSV
SSSSWNPFRRTPSLAKIF*
BS15578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rhp-PA | 718 | CG8497-PA | 1..718 | 1..718 | 3695 | 100 | Plus |
Rhp-PB | 718 | CG8497-PB | 1..718 | 1..718 | 3695 | 100 | Plus |
ALiX-PA | 836 | CG12876-PA | 9..296 | 127..392 | 164 | 21.5 | Plus |