Clone Sequence Records
BS15589.complete Sequence
1400 bp assembled on 2009-12-07
GenBank Submission: KX801949
> BS15589.complete
GAAGTTATCAGTCGACATGGCCTTCCTGGGCGACTGTGTTATTGTGTTCG
TGTCGCAGATGATATTCTTCGCCGGCGGCTGGCTGTTTTTCAACAAAGAA
CTCTTCAAGCACTATGAGATACGACATATATCCGTTCAGTTGATTTTTTC
ATCCACATTTGCCTTATCCATAACCATGTTCGAGTTGATCATATTCGAAA
TCATCGATGTTCTGGAGTCCAGTTCAAGGTACTTCCATTGGCGACTGGGT
CTCACGTTACTACTCTTTATGACGACGGCTGTGATACCCATTTACATTTG
CTACTCCGTGATACACAGCATTTCTTTCTTTTCCGATAAATGGGTCCGAA
TTCTGACCACATTCTGTTGGTTCATCTTTATATATGGGCTTTGGCGGATT
GGTGACCCCTTTCCTTTGCTGAGCGCTTCCCACGGAATCTTTACGATCGA
ACAGGGCGTTTCCCGGATTAGTGTGATTGGGGTCACTGTAATGGCCATAC
TTTCTGGCTTTGGTGCCGTCAATTATCCGTACACCAGTATGTCCTATTTC
ATCAAGCCAGTGTCTCGGAATGATATCATCTGTTTTGAAAGGCGTTTGGC
TTTGACAGTAGAAATGCTGTCGGCCAAAAAGCGGAAGATTGCCATGGCCA
TCTATAATCACAACAAACTGAATCCTTCCAAACCCAGAATTTGGGATATG
CTTGCTTCTGCGGTCCAGCGCAACACGAACAGTGGCGAAGACATCAATCA
ATTAAAACAGGAAGTGTATGGCTTGGAGGAGCTATTACGCTCTGTTTTCT
TAGAACTTAGTTCATTGAAAAACATGGAAGAACGCCAAAGATGGTCTCAA
ACATTGAAGGGAAAGTACTTCAATGTACTAGGACATTTTTTTAGTGTTTA
TTGTGTTTATAAGATATTTATGTGTTGCATCAACATTATCTTCGATAGAG
TCGGTCGCAAGGATCCAGTCACACGAGGCCTTGAAATTGCCATACACTGG
TGCGGCTTTAACATTGACTTTGCGTTCTGGAATCAGCATATATCATTTCT
GCTCGTCGGCTGCATTGTGATCACCTCGATTAGAGGTTTGTTGCTAACGC
TGACAAAATTCTTTTATCGCATTTCATCGAGCAAGTCGAGCAACATCATA
GTACTTATTTTGGGCCAGATCATGGGCATGTACTTCTGTTCCTCAGTATT
GCTGATGCGCATGAACATGCCAGCCGAGTATCGTGTGATCATCACCGAGG
TTCTAGGAAATCTGCACTTCAACTTCTACCATCGTTGGTTTGACGTAATA
TTCCTGGTCAGCGCATTGACCACCATCATTGTTCTATATCTGTCACGCAA
GCCAGTTCGCGTGGACGATTCCGATCTGAACTGAAAGCTTTCTAGACCAT
BS15589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GPHR-RA | 1368 | CG8090-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GPHR-RA | 1780 | CG8090-RA | 171..1538 | 17..1384 | 6840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15199307..15199582 | 1384..1109 | 1380 | 100 | Minus |
2R | 25286936 | 2R | 15200657..15200930 | 329..56 | 1370 | 100 | Minus |
2R | 25286936 | 2R | 15200370..15200596 | 556..330 | 1135 | 100 | Minus |
2R | 25286936 | 2R | 15199635..15199821 | 1108..922 | 935 | 100 | Minus |
2R | 25286936 | 2R | 15200119..15200303 | 740..556 | 925 | 100 | Minus |
2R | 25286936 | 2R | 15199878..15200061 | 922..739 | 920 | 100 | Minus |
2R | 25286936 | 2R | 15200989..15201030 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:47:21 has no hits.
BS15589.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:17 Download gff for
BS15589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-RA | 147..1513 | 17..1383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:45 Download gff for
BS15589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-RA | 171..1537 | 17..1383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:40 Download gff for
BS15589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-RA | 147..1513 | 17..1383 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:48 Download gff for
BS15589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GPHR-RA | 171..1537 | 17..1383 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:48 Download gff for
BS15589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15200371..15200596 | 330..555 | 100 | <- | Minus |
2R | 15200657..15200927 | 59..329 | 100 | <- | Minus |
2R | 15200989..15201030 | 17..58 | 100 | | Minus |
2R | 15200119..15200303 | 556..740 | 100 | <- | Minus |
2R | 15199878..15200059 | 741..922 | 100 | <- | Minus |
2R | 15199308..15199582 | 1109..1383 | 100 | <- | Minus |
2R | 15199635..15199820 | 923..1108 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:45 Download gff for
BS15589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11086813..11087087 | 1109..1383 | 100 | <- | Minus |
arm_2R | 11087140..11087325 | 923..1108 | 100 | <- | Minus |
arm_2R | 11087383..11087564 | 741..922 | 100 | <- | Minus |
arm_2R | 11087624..11087808 | 556..740 | 100 | <- | Minus |
arm_2R | 11087876..11088101 | 330..555 | 100 | <- | Minus |
arm_2R | 11088162..11088432 | 59..329 | 100 | <- | Minus |
arm_2R | 11088494..11088535 | 17..58 | 100 | | Minus |
BS15589.3prime Sequence
851 bp (688 high quality bases) assembled on 2006-12-21
> BS15589.3prime
ATGGTCTAGAAAGCTTTCAGTTCAGATCGGAATCGTCCACGCGAACTGGC
TTGCGTGACAGATATAGAACAATGATGGTGGTCAATGCGCTGACCAGGAA
TATTACGTCAAACCAACGATGGTAGAAGTTGAAGTGCAGATTTCCTAGAA
CCTCGGTGATGATCACACGATACTCGGCTGGCATGTTCATGCGCATCAGC
AATACTGAGGAACAGAAGTACATGCCCATGATCTGGCCCAAAATAAGTAC
TATGATGTTGCTCGACTTGCTCGATGAAATGCGATAAAAGAATTTTGTCA
GCGTTAGCAACAAACCTCTAATCGAGGTGATCACAATGCAGCCGACGAGC
AGAAATGATATATGCTGATTCCAGAACGCAAAGTCAATGTTAAAGCCGCA
CCAGTGTATGGCAATTTCAAGGCCTCGTGTGACTGGATCCTTGCGACCGA
CTCTATCGAAGATAATGTTGATGCAACACATAAATATCTTATAAACACAA
TAAACACTAAAAAAATGTCCTAGTACATTGAAGTACTTTCCCTTCAATGT
TTGAGACCATCTTTGGCGTTCTTCCATGTTTTTCAATGAACTAAGTTCTA
AGAAAACAGAGCGTAATAGCTCCTCCAAGCCATACACTTCCTGTTTTAAT
TGATTGATGTCTTCGCCACTGTTCGTGTTGCGCTGGACCGCAGAAGCAAG
CATATCCCAAATTCTGGGTTTGGAAGGATTCAGTTTGTTGTGATTATAGA
TGGCCATGGCAATCTTCCGCTTTTTGGCCGACAGCATTTCTACTGTCAAA
CCCAACGCCTTTCAAAACAGATGATATCATTCCGAGACACTGGCTTGATG
A
BS15589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8090-PA | 1326 | CG8090-RA | 543..1326 | 800..17 | 3920 | 100 | Minus |
CG8090-PA | 1326 | CG8090-RA | 491..538 | 851..804 | 240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GPHR-RA | 1780 | CG8090-RA | 703..1538 | 851..17 | 4140 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15199307..15199582 | 17..292 | 1380 | 100 | Plus |
2R | 25286936 | 2R | 15199635..15199821 | 293..479 | 935 | 100 | Plus |
2R | 25286936 | 2R | 15199878..15200061 | 479..662 | 920 | 100 | Plus |
2R | 25286936 | 2R | 15200119..15200303 | 661..844 | 860 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 07:34:24 has no hits.
BS15589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:10 Download gff for
BS15589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-PA | 492..1326 | 17..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:17 Download gff for
BS15589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-PA | 492..1326 | 17..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:25:39 Download gff for
BS15589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-RA | 704..1541 | 10..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:23:32 Download gff for
BS15589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GPHR-RA | 704..1541 | 10..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:23:32 Download gff for
BS15589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15200119..15200306 | 661..850 | 96 | | Plus |
2R | 15199304..15199582 | 10..292 | 98 | <- | Plus |
2R | 15199635..15199820 | 293..478 | 100 | <- | Plus |
2R | 15199878..15200059 | 479..660 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:25:39 Download gff for
BS15589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11086809..11087087 | 10..292 | 98 | <- | Plus |
arm_2R | 11087140..11087325 | 293..478 | 100 | <- | Plus |
arm_2R | 11087383..11087564 | 479..660 | 100 | <- | Plus |
arm_2R | 11087624..11087811 | 661..850 | 96 | | Plus |
BS15589.5prime Sequence
834 bp (823 high quality bases) assembled on 2006-12-21
> BS15589.5prime
GAAGTTATCATTCGACATGGCCTTCCTGGGCGACTGTGTTATTGTGTTCG
TGTCGCAGATGATATTCTTCGCCGGCGGCTGGCTGTTTTTCAACAAAGAA
CTCTTCAAGCACTATGAGATACGACATATATCCGTTCAGTTGATTTTTTC
ATCCACATTTGCCTTATCCATAACCATGTTCGAGTTGATCATATTCGAAA
TCATCGATGTTCTGGAGTCCAGTTCAAGGTACTTCCATTGGCGACTGGGT
CTCACGTTACTACTCTTTATGACGACGGCTGTGATACCCATTTACATTTG
CTACTCCGTGATACACAGCATTTCTTTCTTTTCCGATAAATGGGTCCGAA
TTCTGACCACATTCTGTTGGTTCATCTTTATATATGGGCTTTGGCGGATT
GGTGACCCCTTTCCTTTGCTGAGCGCTTCCCACGGAATCTTTACGATCGA
ACAGGGCGTTTCCCGGATTAGTGTGATTGGGGTCACTGTAATGGCCATAC
TTTCTGGCTTTGGTGCCGTCAATTATCCGTACACCAGTATGTCCTATTTC
ATCAAGCCAGTGTCTCGGAATGATATCATCTGTTTTGAAAGGCGTTTGGC
TTTGACAGTAGAAATGCTGTCGGCCAAAAAGCGGAAGATTGCCATGGCCA
TCTATAATCACAACAAACTGAATCCTTCCAAACCCAGAATTTGGGATATG
CTTGCTTCTGCGGTCCAGCGCAACACGAACAGTGGCGAAGACATCAATCA
ATTAAAACAGGAAGTGTATGGCTTGNAGGAGCTATTACGCTCTGTTTTCT
TAGAACTTAGTTCATTGAAAAACATGGAAGAACG
BS15589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8090-PA | 1326 | CG8090-RA | 1..776 | 59..834 | 3861 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GPHR-RA | 1780 | CG8090-RA | 171..988 | 17..834 | 4079 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15200657..15200930 | 329..56 | 1370 | 100 | Minus |
2R | 25286936 | 2R | 15200370..15200596 | 556..330 | 1135 | 100 | Minus |
2R | 25286936 | 2R | 15200119..15200303 | 740..556 | 925 | 100 | Minus |
2R | 25286936 | 2R | 15199966..15200061 | 834..739 | 469 | 99 | Minus |
2R | 25286936 | 2R | 15200989..15201030 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 08:03:55 has no hits.
BS15589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:11 Download gff for
BS15589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-PA | 1..776 | 59..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:18 Download gff for
BS15589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-PA | 1..776 | 59..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:17:26 Download gff for
BS15589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8090-RA | 164..988 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:58 Download gff for
BS15589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GPHR-RA | 164..988 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:58 Download gff for
BS15589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15200657..15200927 | 59..329 | 100 | <- | Minus |
2R | 15200989..15201037 | 9..58 | 94 | | Minus |
2R | 15200371..15200596 | 330..555 | 100 | <- | Minus |
2R | 15199966..15200059 | 741..834 | 98 | <- | Minus |
2R | 15200119..15200303 | 556..740 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:17:26 Download gff for
BS15589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11087471..11087564 | 741..834 | 98 | <- | Minus |
arm_2R | 11087624..11087808 | 556..740 | 100 | <- | Minus |
arm_2R | 11087876..11088101 | 330..555 | 100 | <- | Minus |
arm_2R | 11088162..11088432 | 59..329 | 100 | <- | Minus |
arm_2R | 11088494..11088542 | 9..58 | 94 | | Minus |
BS15589.pep Sequence
Translation from 16 to 1383
> BS15589.pep
MAFLGDCVIVFVSQMIFFAGGWLFFNKELFKHYEIRHISVQLIFSSTFAL
SITMFELIIFEIIDVLESSSRYFHWRLGLTLLLFMTTAVIPIYICYSVIH
SISFFSDKWVRILTTFCWFIFIYGLWRIGDPFPLLSASHGIFTIEQGVSR
ISVIGVTVMAILSGFGAVNYPYTSMSYFIKPVSRNDIICFERRLALTVEM
LSAKKRKIAMAIYNHNKLNPSKPRIWDMLASAVQRNTNSGEDINQLKQEV
YGLEELLRSVFLELSSLKNMEERQRWSQTLKGKYFNVLGHFFSVYCVYKI
FMCCINIIFDRVGRKDPVTRGLEIAIHWCGFNIDFAFWNQHISFLLVGCI
VITSIRGLLLTLTKFFYRISSSKSSNIIVLILGQIMGMYFCSSVLLMRMN
MPAEYRVIITEVLGNLHFNFYHRWFDVIFLVSALTTIIVLYLSRKPVRVD
DSDLN*
BS15589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GPHR-PA | 455 | CG8090-PA | 1..455 | 1..455 | 2367 | 100 | Plus |