Clone BS15589 Report

Search the DGRC for BS15589

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:155
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptGPHR-RA
Protein status:BS15589.pep: full length peptide match
Sequenced Size:1400

Clone Sequence Records

BS15589.complete Sequence

1400 bp assembled on 2009-12-07

GenBank Submission: KX801949

> BS15589.complete
GAAGTTATCAGTCGACATGGCCTTCCTGGGCGACTGTGTTATTGTGTTCG
TGTCGCAGATGATATTCTTCGCCGGCGGCTGGCTGTTTTTCAACAAAGAA
CTCTTCAAGCACTATGAGATACGACATATATCCGTTCAGTTGATTTTTTC
ATCCACATTTGCCTTATCCATAACCATGTTCGAGTTGATCATATTCGAAA
TCATCGATGTTCTGGAGTCCAGTTCAAGGTACTTCCATTGGCGACTGGGT
CTCACGTTACTACTCTTTATGACGACGGCTGTGATACCCATTTACATTTG
CTACTCCGTGATACACAGCATTTCTTTCTTTTCCGATAAATGGGTCCGAA
TTCTGACCACATTCTGTTGGTTCATCTTTATATATGGGCTTTGGCGGATT
GGTGACCCCTTTCCTTTGCTGAGCGCTTCCCACGGAATCTTTACGATCGA
ACAGGGCGTTTCCCGGATTAGTGTGATTGGGGTCACTGTAATGGCCATAC
TTTCTGGCTTTGGTGCCGTCAATTATCCGTACACCAGTATGTCCTATTTC
ATCAAGCCAGTGTCTCGGAATGATATCATCTGTTTTGAAAGGCGTTTGGC
TTTGACAGTAGAAATGCTGTCGGCCAAAAAGCGGAAGATTGCCATGGCCA
TCTATAATCACAACAAACTGAATCCTTCCAAACCCAGAATTTGGGATATG
CTTGCTTCTGCGGTCCAGCGCAACACGAACAGTGGCGAAGACATCAATCA
ATTAAAACAGGAAGTGTATGGCTTGGAGGAGCTATTACGCTCTGTTTTCT
TAGAACTTAGTTCATTGAAAAACATGGAAGAACGCCAAAGATGGTCTCAA
ACATTGAAGGGAAAGTACTTCAATGTACTAGGACATTTTTTTAGTGTTTA
TTGTGTTTATAAGATATTTATGTGTTGCATCAACATTATCTTCGATAGAG
TCGGTCGCAAGGATCCAGTCACACGAGGCCTTGAAATTGCCATACACTGG
TGCGGCTTTAACATTGACTTTGCGTTCTGGAATCAGCATATATCATTTCT
GCTCGTCGGCTGCATTGTGATCACCTCGATTAGAGGTTTGTTGCTAACGC
TGACAAAATTCTTTTATCGCATTTCATCGAGCAAGTCGAGCAACATCATA
GTACTTATTTTGGGCCAGATCATGGGCATGTACTTCTGTTCCTCAGTATT
GCTGATGCGCATGAACATGCCAGCCGAGTATCGTGTGATCATCACCGAGG
TTCTAGGAAATCTGCACTTCAACTTCTACCATCGTTGGTTTGACGTAATA
TTCCTGGTCAGCGCATTGACCACCATCATTGTTCTATATCTGTCACGCAA
GCCAGTTCGCGTGGACGATTCCGATCTGAACTGAAAGCTTTCTAGACCAT

BS15589.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
GPHR-RA 1368 CG8090-PA 1..1368 17..1384 6840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
GPHR-RA 1780 CG8090-RA 171..1538 17..1384 6840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15199307..15199582 1384..1109 1380 100 Minus
2R 25286936 2R 15200657..15200930 329..56 1370 100 Minus
2R 25286936 2R 15200370..15200596 556..330 1135 100 Minus
2R 25286936 2R 15199635..15199821 1108..922 935 100 Minus
2R 25286936 2R 15200119..15200303 740..556 925 100 Minus
2R 25286936 2R 15199878..15200061 922..739 920 100 Minus
2R 25286936 2R 15200989..15201030 58..17 210 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:47:21 has no hits.

BS15589.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:17 Download gff for BS15589.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 147..1513 17..1383 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:45 Download gff for BS15589.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 171..1537 17..1383 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:40 Download gff for BS15589.complete
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 147..1513 17..1383 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:48 Download gff for BS15589.complete
Subject Subject Range Query Range Percent Splice Strand
GPHR-RA 171..1537 17..1383 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:48 Download gff for BS15589.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15200371..15200596 330..555 100 <- Minus
2R 15200657..15200927 59..329 100 <- Minus
2R 15200989..15201030 17..58 100   Minus
2R 15200119..15200303 556..740 100 <- Minus
2R 15199878..15200059 741..922 100 <- Minus
2R 15199308..15199582 1109..1383 100 <- Minus
2R 15199635..15199820 923..1108 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:45 Download gff for BS15589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11086813..11087087 1109..1383 100 <- Minus
arm_2R 11087140..11087325 923..1108 100 <- Minus
arm_2R 11087383..11087564 741..922 100 <- Minus
arm_2R 11087624..11087808 556..740 100 <- Minus
arm_2R 11087876..11088101 330..555 100 <- Minus
arm_2R 11088162..11088432 59..329 100 <- Minus
arm_2R 11088494..11088535 17..58 100   Minus

BS15589.3prime Sequence

851 bp (688 high quality bases) assembled on 2006-12-21

> BS15589.3prime
ATGGTCTAGAAAGCTTTCAGTTCAGATCGGAATCGTCCACGCGAACTGGC
TTGCGTGACAGATATAGAACAATGATGGTGGTCAATGCGCTGACCAGGAA
TATTACGTCAAACCAACGATGGTAGAAGTTGAAGTGCAGATTTCCTAGAA
CCTCGGTGATGATCACACGATACTCGGCTGGCATGTTCATGCGCATCAGC
AATACTGAGGAACAGAAGTACATGCCCATGATCTGGCCCAAAATAAGTAC
TATGATGTTGCTCGACTTGCTCGATGAAATGCGATAAAAGAATTTTGTCA
GCGTTAGCAACAAACCTCTAATCGAGGTGATCACAATGCAGCCGACGAGC
AGAAATGATATATGCTGATTCCAGAACGCAAAGTCAATGTTAAAGCCGCA
CCAGTGTATGGCAATTTCAAGGCCTCGTGTGACTGGATCCTTGCGACCGA
CTCTATCGAAGATAATGTTGATGCAACACATAAATATCTTATAAACACAA
TAAACACTAAAAAAATGTCCTAGTACATTGAAGTACTTTCCCTTCAATGT
TTGAGACCATCTTTGGCGTTCTTCCATGTTTTTCAATGAACTAAGTTCTA
AGAAAACAGAGCGTAATAGCTCCTCCAAGCCATACACTTCCTGTTTTAAT
TGATTGATGTCTTCGCCACTGTTCGTGTTGCGCTGGACCGCAGAAGCAAG
CATATCCCAAATTCTGGGTTTGGAAGGATTCAGTTTGTTGTGATTATAGA
TGGCCATGGCAATCTTCCGCTTTTTGGCCGACAGCATTTCTACTGTCAAA
CCCAACGCCTTTCAAAACAGATGATATCATTCCGAGACACTGGCTTGATG
A

BS15589.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8090-PA 1326 CG8090-RA 543..1326 800..17 3920 100 Minus
CG8090-PA 1326 CG8090-RA 491..538 851..804 240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
GPHR-RA 1780 CG8090-RA 703..1538 851..17 4140 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15199307..15199582 17..292 1380 100 Plus
2R 25286936 2R 15199635..15199821 293..479 935 100 Plus
2R 25286936 2R 15199878..15200061 479..662 920 100 Plus
2R 25286936 2R 15200119..15200303 661..844 860 98.9 Plus
Blast to na_te.dros performed on 2015-02-08 07:34:24 has no hits.

BS15589.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:10 Download gff for BS15589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8090-PA 492..1326 17..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:17 Download gff for BS15589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8090-PA 492..1326 17..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:25:39 Download gff for BS15589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 704..1541 10..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:23:32 Download gff for BS15589.3prime
Subject Subject Range Query Range Percent Splice Strand
GPHR-RA 704..1541 10..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:23:32 Download gff for BS15589.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15200119..15200306 661..850 96   Plus
2R 15199304..15199582 10..292 98 <- Plus
2R 15199635..15199820 293..478 100 <- Plus
2R 15199878..15200059 479..660 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:25:39 Download gff for BS15589.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11086809..11087087 10..292 98 <- Plus
arm_2R 11087140..11087325 293..478 100 <- Plus
arm_2R 11087383..11087564 479..660 100 <- Plus
arm_2R 11087624..11087811 661..850 96   Plus

BS15589.5prime Sequence

834 bp (823 high quality bases) assembled on 2006-12-21

> BS15589.5prime
GAAGTTATCATTCGACATGGCCTTCCTGGGCGACTGTGTTATTGTGTTCG
TGTCGCAGATGATATTCTTCGCCGGCGGCTGGCTGTTTTTCAACAAAGAA
CTCTTCAAGCACTATGAGATACGACATATATCCGTTCAGTTGATTTTTTC
ATCCACATTTGCCTTATCCATAACCATGTTCGAGTTGATCATATTCGAAA
TCATCGATGTTCTGGAGTCCAGTTCAAGGTACTTCCATTGGCGACTGGGT
CTCACGTTACTACTCTTTATGACGACGGCTGTGATACCCATTTACATTTG
CTACTCCGTGATACACAGCATTTCTTTCTTTTCCGATAAATGGGTCCGAA
TTCTGACCACATTCTGTTGGTTCATCTTTATATATGGGCTTTGGCGGATT
GGTGACCCCTTTCCTTTGCTGAGCGCTTCCCACGGAATCTTTACGATCGA
ACAGGGCGTTTCCCGGATTAGTGTGATTGGGGTCACTGTAATGGCCATAC
TTTCTGGCTTTGGTGCCGTCAATTATCCGTACACCAGTATGTCCTATTTC
ATCAAGCCAGTGTCTCGGAATGATATCATCTGTTTTGAAAGGCGTTTGGC
TTTGACAGTAGAAATGCTGTCGGCCAAAAAGCGGAAGATTGCCATGGCCA
TCTATAATCACAACAAACTGAATCCTTCCAAACCCAGAATTTGGGATATG
CTTGCTTCTGCGGTCCAGCGCAACACGAACAGTGGCGAAGACATCAATCA
ATTAAAACAGGAAGTGTATGGCTTGNAGGAGCTATTACGCTCTGTTTTCT
TAGAACTTAGTTCATTGAAAAACATGGAAGAACG

BS15589.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8090-PA 1326 CG8090-RA 1..776 59..834 3861 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
GPHR-RA 1780 CG8090-RA 171..988 17..834 4079 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15200657..15200930 329..56 1370 100 Minus
2R 25286936 2R 15200370..15200596 556..330 1135 100 Minus
2R 25286936 2R 15200119..15200303 740..556 925 100 Minus
2R 25286936 2R 15199966..15200061 834..739 469 99 Minus
2R 25286936 2R 15200989..15201030 58..17 210 100 Minus
Blast to na_te.dros performed on 2015-02-11 08:03:55 has no hits.

BS15589.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:11 Download gff for BS15589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8090-PA 1..776 59..834 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:18 Download gff for BS15589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8090-PA 1..776 59..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:17:26 Download gff for BS15589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8090-RA 164..988 9..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:58 Download gff for BS15589.5prime
Subject Subject Range Query Range Percent Splice Strand
GPHR-RA 164..988 9..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:58 Download gff for BS15589.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15200657..15200927 59..329 100 <- Minus
2R 15200989..15201037 9..58 94   Minus
2R 15200371..15200596 330..555 100 <- Minus
2R 15199966..15200059 741..834 98 <- Minus
2R 15200119..15200303 556..740 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:17:26 Download gff for BS15589.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11087471..11087564 741..834 98 <- Minus
arm_2R 11087624..11087808 556..740 100 <- Minus
arm_2R 11087876..11088101 330..555 100 <- Minus
arm_2R 11088162..11088432 59..329 100 <- Minus
arm_2R 11088494..11088542 9..58 94   Minus

BS15589.pep Sequence

Translation from 16 to 1383

> BS15589.pep
MAFLGDCVIVFVSQMIFFAGGWLFFNKELFKHYEIRHISVQLIFSSTFAL
SITMFELIIFEIIDVLESSSRYFHWRLGLTLLLFMTTAVIPIYICYSVIH
SISFFSDKWVRILTTFCWFIFIYGLWRIGDPFPLLSASHGIFTIEQGVSR
ISVIGVTVMAILSGFGAVNYPYTSMSYFIKPVSRNDIICFERRLALTVEM
LSAKKRKIAMAIYNHNKLNPSKPRIWDMLASAVQRNTNSGEDINQLKQEV
YGLEELLRSVFLELSSLKNMEERQRWSQTLKGKYFNVLGHFFSVYCVYKI
FMCCINIIFDRVGRKDPVTRGLEIAIHWCGFNIDFAFWNQHISFLLVGCI
VITSIRGLLLTLTKFFYRISSSKSSNIIVLILGQIMGMYFCSSVLLMRMN
MPAEYRVIITEVLGNLHFNFYHRWFDVIFLVSALTTIIVLYLSRKPVRVD
DSDLN*

BS15589.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
GPHR-PA 455 CG8090-PA 1..455 1..455 2367 100 Plus