Clone Sequence Records
BS15602.3prime Sequence
822 bp (766 high quality bases) assembled on 2006-12-21
> BS15602.3prime
ATGGTCTAGAAAGCTTTTACTTTTTATGCTTTGGCCGCTGGGGACTCGTG
CTGGCAATGGAGCTAATGTCGGAAACATTATCCCTGCCCAAGTGCCCGCC
CTTCTCGTCCAGATCGACCACGTGGATGTCGAAATTCGAATTATCGGAGC
GCACACCATCTGAGGCACGAGTGTTTTCCCGGTTGCCGCCCTCCACGGAG
AAGGGGGCGTGGGTGGTGGGCTTATAGGTGGGTGTAGGAGCAGTTGGTGC
TGATTTCTTAGGAGGAGCAGTGGGAGCAGATGGTGCCGAGTTCGCTATCA
GCTTGCTGGGACACAATGGAAGCTCTCGGTTTCGGAATTGCGAAAGAGCA
GTGTGGGAAACTCCTGGAGTTGGAGTCGGAGTGGGAGCTGGTGAGGATTT
CCTGCTGATCTTCAGCTCGGGAGCTGTGAGAGACCTGGTGTTATTGGCGG
CCATTGCCCGGGCAGGCACTGTCTTAAGTGGTGGCCGCCAGATGGGCCTA
ATTTTAGGTTTTTCACTATCGCTAATCTCAGCACTGATTTGGTTGAGTAG
CTCCAGCAAAGTGCTCGTCTTCTCATCCTCGAACTCGATGCGAATCGGTG
ACTCCCGACCGGAGGGACAACCTGGATTGAGCATTATAAGCCTCTTGGCC
TCTTCGATGGCCCTGCCCAGATTCTGGAGGCTCTTCCGCTCGTTTTTGGT
GCAGCGACCTATTTGGGAATCCTTGGCAGCACGAAGCACCACGTTCCACT
TGTGGGTAGTGGACTGAAGAAGTACGGTGCGGGCCACTCGCTGGAATCGC
TCCTTGGCGGTTTCCTTGGCTG
BS15602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18345-PA | 3375 | trpl-RA | 2570..3366 | 822..26 | 3985 | 100 | Minus |
CG18345-PC | 2301 | trpl-RC | 1496..2292 | 822..26 | 3985 | 100 | Minus |
CG18345-PB | 3375 | trpl-RB | 2570..3366 | 822..26 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trpl-RD | 3755 | CG18345-RD | 2829..3635 | 822..16 | 3990 | 99.6 | Minus |
trpl-RB | 3893 | CG18345-RB | 2967..3773 | 822..16 | 3990 | 99.6 | Minus |
trpl-RA | 3768 | CG18345-RA | 2842..3648 | 822..16 | 3990 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9764771..9765398 | 643..16 | 3095 | 99.5 | Minus |
2R | 25286936 | 2R | 9764533..9764714 | 822..641 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:44:02 has no hits.
BS15602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:23 Download gff for
BS15602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-PA | 2570..3375 | 17..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:35 Download gff for
BS15602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18345-PB | 2570..3375 | 17..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:47:01 Download gff for
BS15602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-RA | 2842..3648 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:40 Download gff for
BS15602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-RA | 2842..3648 | 16..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:40 Download gff for
BS15602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9764533..9764713 | 642..822 | 100 | -> | Minus |
2R | 9764773..9765398 | 16..641 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:47:01 Download gff for
BS15602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5652038..5652218 | 642..822 | 100 | -> | Minus |
arm_2R | 5652278..5652903 | 16..641 | 99 | | Minus |
BS15602.5prime Sequence
968 bp (725 high quality bases) assembled on 2006-12-21
> BS15602.5prime
GAAGTTATCCTTTGACATGTGCGCCCCGAATTGCCGGACGGGCCAGTTGA
TGCGCAAGCCCTTTATGAAATTCCTGATCCATGCCTCCTCCTATTTGTTC
TTCCTGTTCATCTTGATTCTGGTGTCTCAGCGAGCGGACGATGACTTTGT
ACGCATCTTCGGGACGACCAGGATGAAGAAGGAGCTGGCGGAGCAGGAGC
TGCGTCAGCGAGGCCAGACACCCAGCAAGCTGGAGCTCATCGTGGTGATG
TACGTGATTGGGTTCGTGTGGGAGGAGGTGCAGGAGATATTTGCCGTGGG
CATGAAGAGTTATTTGCGCAACATGTGGAACTTCATCGACTTTCTGCGCA
ACAGTCTCTACGTGAGTGTGATGTGTTTAAGAGCCTTTGCCTACATCCAG
CAGGCCACAGAAATAGCAAGGGATCCGCAGATGGCTTACATACCACGCGA
GAAATGGCACGATTTTGACCCGCAACTAATAGCCGAAGGTCTCTTTGCGG
CGGCCAATGTCTTCTCGGCCTTGAAGCTGGTGCACCTGTTCAGCATCAAT
CCGCACCTGGGTCCGCTGCAGATCTCCCTAGGTCGCATGGTCATCGATAT
AGTAAAATTTTTCTTTATCTACACCCTGGTGCTGTTCGCCTTCGCCTGTG
GACTGAACCAACTGCTCTGGTACTTTGCCGCCCTGGAGAAGAGCAAGTGC
TATGTCCTGCCGGGTGGCGAGGCGGATTGGGGCTCACACGGAGACTCCTG
CATGAAATGGCGCCGGTTTGGCAACCTTTTCGAGTCCTCGCAGTCGCTCT
TTTGGGCCAGCTTTGGGATGGTCGGACTGGACGACTTCGAGCTCAGTGGC
ATCAAGTCGTATACGCGATTCTGGGGACTGCTCATGTTCGGCTCGTACAG
CGTCATTAACGTGATTGTGCTGCTGAATCTGCTCATCGCCCTGATGTCCA
TTTCGTATGGCCATGATT
BS15602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18345-PA | 3375 | trpl-RA | 1073..2017 | 15..959 | 4675 | 99.7 | Plus |
CG18345-PB | 3375 | trpl-RB | 1073..2017 | 15..959 | 4675 | 99.7 | Plus |
CG18345-PC | 2301 | trpl-RC | 1..943 | 17..959 | 4665 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trpl-RD | 3755 | CG18345-RD | 1332..2284 | 15..968 | 4715 | 99.7 | Plus |
trpl-RB | 3893 | CG18345-RB | 1470..2422 | 15..968 | 4715 | 99.7 | Plus |
trpl-RA | 3768 | CG18345-RA | 1345..2297 | 15..968 | 4715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9763056..9763450 | 380..774 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 9762723..9762996 | 108..381 | 1370 | 100 | Plus |
2R | 25286936 | 2R | 9763526..9763714 | 771..959 | 900 | 98.4 | Plus |
2R | 25286936 | 2R | 9762184..9762276 | 15..107 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:00:20 has no hits.
BS15602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:24 Download gff for
BS15602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-PA | 1067..2025 | 8..968 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:37 Download gff for
BS15602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18345-PB | 1067..2025 | 8..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:31:41 Download gff for
BS15602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-RA | 1339..2297 | 8..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:52 Download gff for
BS15602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-RA | 1339..2297 | 8..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:52 Download gff for
BS15602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9762178..9762276 | 8..107 | 97 | -> | Plus |
2R | 9762723..9762996 | 108..381 | 100 | -> | Plus |
2R | 9763058..9763450 | 382..774 | 100 | -> | Plus |
2R | 9763530..9763722 | 775..968 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:31:41 Download gff for
BS15602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5650228..5650501 | 108..381 | 100 | -> | Plus |
arm_2R | 5649683..5649781 | 8..107 | 97 | -> | Plus |
arm_2R | 5650563..5650955 | 382..774 | 100 | -> | Plus |
arm_2R | 5651035..5651227 | 775..968 | 98 | | Plus |
BS15602.complete Sequence
2333 bp assembled on 2008-08-15
GenBank Submission: KX800967
> BS15602.complete
GAAGTTATCCTTTGACATGTGCGCCCCGAATTGCCGGACGGGCCAGTTGA
TGCGCAAGCCCTTTATGAAATTCCTGATCCATGCCTCCTCCTATTTGTTC
TTCCTGTTCATCTTGATTCTGGTGTCTCAGCGAGCGGACGATGACTTTGT
ACGCATCTTCGGGACGACCAGGATGAAGAAGGAGCTGGCGGAGCAGGAGC
TGCGTCAGCGAGGCCAGACACCCAGCAAGCTGGAGCTCATCGTGGTGATG
TACGTGATTGGGTTCGTGTGGGAGGAGGTGCAGGAGATATTTGCCGTGGG
CATGAAGAGTTATTTGCGCAACATGTGGAACTTCATCGACTTTCTGCGCA
ACAGTCTCTACGTGAGTGTGATGTGTTTAAGAGCCTTTGCCTACATCCAG
CAGGCCACAGAAATAGCAAGGGATCCGCAGATGGCTTACATACCACGCGA
GAAATGGCACGATTTTGACCCGCAACTAATAGCCGAAGGTCTCTTTGCGG
CGGCCAATGTCTTCTCGGCCTTGAAGCTGGTGCACCTGTTCAGCATCAAT
CCGCACCTGGGTCCGCTGCAGATCTCCCTAGGTCGCATGGTCATCGATAT
AGTAAAATTTTTCTTTATCTACACCCTGGTGCTGTTCGCCTTCGCCTGTG
GACTGAACCAACTGCTCTGGTACTTTGCCGCCCTGGAGAAGAGCAAGTGC
TATGTCCTGCCGGGTGGCGAGGCGGATTGGGGCTCACACGGAGACTCCTG
CATGAAATGGCGCCGGTTTGGCAACCTTTTCGAGTCCTCGCAGTCGCTCT
TTTGGGCCAGCTTTGGGATGGTCGGACTGGACGACTTCGAGCTCAGTGGC
ATCAAGTCGTATACGCGATTCTGGGGACTGCTCATGTTCGGCTCGTACAG
CGTCATTAACGTGATTGTGCTGCTGAATCTGCTCATCGCCATGATGTCCA
ATTCGTATGCCATGATTGATGAGCACTCGGACACGGAGTGGAAGTTTGCC
CGAACCAAGTTGTGGATGAGCTATTTCGAGGACAGTGCCACCCTGCCGCC
ACCCTTCAATGTCCTGCCCTCCGTCAAGTGGGTCATCAGGATTTTCCGCA
AGTCTAGCAAGACCATCGATCGTCAACGCTCCAAGAAACGAAAGGAGCAG
GAGCAGTTTAGCGAGTATGATAATATAATGCGCTCCCTGGTTTGGCGATA
TGTGGCCGCCATGCATCGCAAGTTCGAGAATAATCCCGTATCGGAGGACG
ATATCAATGAGGTCAAGAGTGAGATCAATACGATGCGTTATGAGATGCTC
GAGATATTCGAGAACAGCGGAATGGATGTTTCCTCGGCCAACAAAAAGGA
GAGGCAACCACGACCTCGGCGTATCAAAGTGTGGGAACGGCGCTTGATGA
AGGGCTTCCAGGTGGCGCCAGTGCAAAATGGCTGTGAGCTCGATGCCTTT
GGGAATGTAAACGGGCAGGGAGAAATGCAGGAGATCAAGGTGGAGTCCAT
ACCCTCAAAGCCAGCCAAGGAAACCGCCAAGGAGCGATTCCAGCGAGTGG
CCCGCACCGTACTTCTTCAGTCCACTACCCACAAGTGGAACGTGGTGCTT
CGTGCTGCCAAGGATTCCCAAATAGGTCGCTGCACCAAAAACGAGCGGAA
GAGCCTCCAGAATCTGGGCAGGGCCATCGAAGAGGCCAAGAGGCTTATAA
TGCTCAATCCAGGTTGTCCCTCCGGTCGGGAGTCACCGATTCGCATCGAG
TTCGAGGATGAGAAGACGAGCACTTTGCTGGAGCTACTCAACCAAATCAG
TGCTGAGATTAGCGATAGTGAAAAACCTAAAATTAGGCCCATCTGGCGGC
CACCACTTAAGACAGTGCCTGCCCGGGCAATGGCCGCCAATAACACCAGG
TCTCTCACAGCTCCCGAGCTGAAGATCAGCAGGAAATCCTCACCAGCTCC
CACTCCGACTCCAACTCCAGGAGTTTCCCACACTGCTCTTTCGCAATTCC
GAAACCGAGAGCTTCCATTGTGTCCCAGCAAGCTGATAGCGAACTCGGCA
CCATCTGCTCCCACTGCTCCTCCTAAGAAATCAGCACCAACTGCTCCTAC
ACCCACCTATAAGCCCACCACCCACGCCCCCTTCTCCGTGGAGGGCGGCA
ACCGGGAAAACACTCGTGCCTCAGATGGTGTGCGCTCCGATAATTCGAAT
TTCGACATCCACGTGGTCGATCTGGACGAGAAGGGCGGGCACTTGGGCAG
GGATAATGTTTCCGACATTAGCTCCATTGCCAGCACGAGTCCCCAGCGGC
CAAAGCATCGAAACTAAAAGCTTTCTAGACCAT
BS15602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trpl-RD | 3375 | CG18345-PD | 1073..3375 | 15..2317 | 11515 | 100 | Plus |
trpl-RB | 3375 | CG18345-PB | 1073..3375 | 15..2317 | 11515 | 100 | Plus |
trpl-RA | 3375 | CG18345-PA | 1073..3375 | 15..2317 | 11515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trpl-RD | 3755 | CG18345-RD | 1332..3635 | 15..2318 | 11520 | 100 | Plus |
trpl-RB | 3893 | CG18345-RB | 1470..3773 | 15..2318 | 11520 | 100 | Plus |
trpl-RA | 3768 | CG18345-RA | 1345..3648 | 15..2318 | 11520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9764771..9765398 | 1691..2318 | 3140 | 100 | Plus |
2R | 25286936 | 2R | 9763056..9763450 | 380..774 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 9764377..9764714 | 1356..1693 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 9762723..9762996 | 108..381 | 1370 | 100 | Plus |
2R | 25286936 | 2R | 9764100..9764321 | 1134..1355 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 9763526..9763726 | 771..971 | 990 | 99.5 | Plus |
2R | 25286936 | 2R | 9763789..9763953 | 971..1135 | 825 | 100 | Plus |
2R | 25286936 | 2R | 9762184..9762276 | 15..107 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:47:54 has no hits.
BS15602.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:19:34 Download gff for
BS15602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-RB | 1434..3743 | 8..2318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:13 Download gff for
BS15602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-RA | 1347..3645 | 17..2315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:12 Download gff for
BS15602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-RB | 1442..3740 | 17..2315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:02 Download gff for
BS15602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trpl-RA | 1347..3645 | 17..2315 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:02 Download gff for
BS15602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9762723..9762996 | 108..381 | 100 | -> | Plus |
2R | 9762186..9762276 | 17..107 | 100 | -> | Plus |
2R | 9763058..9763450 | 382..774 | 100 | -> | Plus |
2R | 9763530..9763725 | 775..970 | 100 | -> | Plus |
2R | 9763789..9763953 | 971..1135 | 100 | -> | Plus |
2R | 9764102..9764321 | 1136..1355 | 100 | -> | Plus |
2R | 9764377..9764713 | 1356..1692 | 100 | -> | Plus |
2R | 9764773..9765395 | 1693..2315 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:13 Download gff for
BS15602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5651882..5652218 | 1356..1692 | 100 | -> | Plus |
arm_2R | 5649691..5649781 | 17..107 | 100 | -> | Plus |
arm_2R | 5650228..5650501 | 108..381 | 100 | -> | Plus |
arm_2R | 5650563..5650955 | 382..774 | 100 | -> | Plus |
arm_2R | 5651035..5651230 | 775..970 | 100 | -> | Plus |
arm_2R | 5651294..5651458 | 971..1135 | 100 | -> | Plus |
arm_2R | 5651607..5651826 | 1136..1355 | 100 | -> | Plus |
arm_2R | 5652278..5652900 | 1693..2315 | 100 | | Plus |
BS15602.pep Sequence
Translation from 16 to 2316
> BS15602.pep
MCAPNCRTGQLMRKPFMKFLIHASSYLFFLFILILVSQRADDDFVRIFGT
TRMKKELAEQELRQRGQTPSKLELIVVMYVIGFVWEEVQEIFAVGMKSYL
RNMWNFIDFLRNSLYVSVMCLRAFAYIQQATEIARDPQMAYIPREKWHDF
DPQLIAEGLFAAANVFSALKLVHLFSINPHLGPLQISLGRMVIDIVKFFF
IYTLVLFAFACGLNQLLWYFAALEKSKCYVLPGGEADWGSHGDSCMKWRR
FGNLFESSQSLFWASFGMVGLDDFELSGIKSYTRFWGLLMFGSYSVINVI
VLLNLLIAMMSNSYAMIDEHSDTEWKFARTKLWMSYFEDSATLPPPFNVL
PSVKWVIRIFRKSSKTIDRQRSKKRKEQEQFSEYDNIMRSLVWRYVAAMH
RKFENNPVSEDDINEVKSEINTMRYEMLEIFENSGMDVSSANKKERQPRP
RRIKVWERRLMKGFQVAPVQNGCELDAFGNVNGQGEMQEIKVESIPSKPA
KETAKERFQRVARTVLLQSTTHKWNVVLRAAKDSQIGRCTKNERKSLQNL
GRAIEEAKRLIMLNPGCPSGRESPIRIEFEDEKTSTLLELLNQISAEISD
SEKPKIRPIWRPPLKTVPARAMAANNTRSLTAPELKISRKSSPAPTPTPT
PGVSHTALSQFRNRELPLCPSKLIANSAPSAPTAPPKKSAPTAPTPTYKP
TTHAPFSVEGGNRENTRASDGVRSDNSNFDIHVVDLDEKGGHLGRDNVSD
ISSIASTSPQRPKHRN*
BS15602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trpl-PD | 1124 | CG18345-PD | 359..1124 | 1..766 | 3995 | 100 | Plus |
trpl-PB | 1124 | CG18345-PB | 359..1124 | 1..766 | 3995 | 100 | Plus |
trpl-PA | 1124 | CG18345-PA | 359..1124 | 1..766 | 3995 | 100 | Plus |
trp-PA | 1275 | CG7875-PA | 354..900 | 3..564 | 1244 | 45.2 | Plus |
Trpgamma-PB | 1128 | CG5996-PB | 340..822 | 3..468 | 1234 | 49.4 | Plus |