Clone BS15602 Report

Search the DGRC for BS15602

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:2
Vector:pDNR-Dual
Associated Gene/Transcripttrpl-RC
Protein status:BS15602.pep: full length peptide match
Sequenced Size:2333

Clone Sequence Records

BS15602.3prime Sequence

822 bp (766 high quality bases) assembled on 2006-12-21

> BS15602.3prime
ATGGTCTAGAAAGCTTTTACTTTTTATGCTTTGGCCGCTGGGGACTCGTG
CTGGCAATGGAGCTAATGTCGGAAACATTATCCCTGCCCAAGTGCCCGCC
CTTCTCGTCCAGATCGACCACGTGGATGTCGAAATTCGAATTATCGGAGC
GCACACCATCTGAGGCACGAGTGTTTTCCCGGTTGCCGCCCTCCACGGAG
AAGGGGGCGTGGGTGGTGGGCTTATAGGTGGGTGTAGGAGCAGTTGGTGC
TGATTTCTTAGGAGGAGCAGTGGGAGCAGATGGTGCCGAGTTCGCTATCA
GCTTGCTGGGACACAATGGAAGCTCTCGGTTTCGGAATTGCGAAAGAGCA
GTGTGGGAAACTCCTGGAGTTGGAGTCGGAGTGGGAGCTGGTGAGGATTT
CCTGCTGATCTTCAGCTCGGGAGCTGTGAGAGACCTGGTGTTATTGGCGG
CCATTGCCCGGGCAGGCACTGTCTTAAGTGGTGGCCGCCAGATGGGCCTA
ATTTTAGGTTTTTCACTATCGCTAATCTCAGCACTGATTTGGTTGAGTAG
CTCCAGCAAAGTGCTCGTCTTCTCATCCTCGAACTCGATGCGAATCGGTG
ACTCCCGACCGGAGGGACAACCTGGATTGAGCATTATAAGCCTCTTGGCC
TCTTCGATGGCCCTGCCCAGATTCTGGAGGCTCTTCCGCTCGTTTTTGGT
GCAGCGACCTATTTGGGAATCCTTGGCAGCACGAAGCACCACGTTCCACT
TGTGGGTAGTGGACTGAAGAAGTACGGTGCGGGCCACTCGCTGGAATCGC
TCCTTGGCGGTTTCCTTGGCTG

BS15602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18345-PA 3375 trpl-RA 2570..3366 822..26 3985 100 Minus
CG18345-PC 2301 trpl-RC 1496..2292 822..26 3985 100 Minus
CG18345-PB 3375 trpl-RB 2570..3366 822..26 3985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
trpl-RD 3755 CG18345-RD 2829..3635 822..16 3990 99.6 Minus
trpl-RB 3893 CG18345-RB 2967..3773 822..16 3990 99.6 Minus
trpl-RA 3768 CG18345-RA 2842..3648 822..16 3990 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9764771..9765398 643..16 3095 99.5 Minus
2R 25286936 2R 9764533..9764714 822..641 910 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:44:02 has no hits.

BS15602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:23 Download gff for BS15602.3prime
Subject Subject Range Query Range Percent Splice Strand
trpl-PA 2570..3375 17..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:35 Download gff for BS15602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18345-PB 2570..3375 17..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:47:01 Download gff for BS15602.3prime
Subject Subject Range Query Range Percent Splice Strand
trpl-RA 2842..3648 16..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:40 Download gff for BS15602.3prime
Subject Subject Range Query Range Percent Splice Strand
trpl-RA 2842..3648 16..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:40 Download gff for BS15602.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9764533..9764713 642..822 100 -> Minus
2R 9764773..9765398 16..641 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:47:01 Download gff for BS15602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5652038..5652218 642..822 100 -> Minus
arm_2R 5652278..5652903 16..641 99   Minus

BS15602.5prime Sequence

968 bp (725 high quality bases) assembled on 2006-12-21

> BS15602.5prime
GAAGTTATCCTTTGACATGTGCGCCCCGAATTGCCGGACGGGCCAGTTGA
TGCGCAAGCCCTTTATGAAATTCCTGATCCATGCCTCCTCCTATTTGTTC
TTCCTGTTCATCTTGATTCTGGTGTCTCAGCGAGCGGACGATGACTTTGT
ACGCATCTTCGGGACGACCAGGATGAAGAAGGAGCTGGCGGAGCAGGAGC
TGCGTCAGCGAGGCCAGACACCCAGCAAGCTGGAGCTCATCGTGGTGATG
TACGTGATTGGGTTCGTGTGGGAGGAGGTGCAGGAGATATTTGCCGTGGG
CATGAAGAGTTATTTGCGCAACATGTGGAACTTCATCGACTTTCTGCGCA
ACAGTCTCTACGTGAGTGTGATGTGTTTAAGAGCCTTTGCCTACATCCAG
CAGGCCACAGAAATAGCAAGGGATCCGCAGATGGCTTACATACCACGCGA
GAAATGGCACGATTTTGACCCGCAACTAATAGCCGAAGGTCTCTTTGCGG
CGGCCAATGTCTTCTCGGCCTTGAAGCTGGTGCACCTGTTCAGCATCAAT
CCGCACCTGGGTCCGCTGCAGATCTCCCTAGGTCGCATGGTCATCGATAT
AGTAAAATTTTTCTTTATCTACACCCTGGTGCTGTTCGCCTTCGCCTGTG
GACTGAACCAACTGCTCTGGTACTTTGCCGCCCTGGAGAAGAGCAAGTGC
TATGTCCTGCCGGGTGGCGAGGCGGATTGGGGCTCACACGGAGACTCCTG
CATGAAATGGCGCCGGTTTGGCAACCTTTTCGAGTCCTCGCAGTCGCTCT
TTTGGGCCAGCTTTGGGATGGTCGGACTGGACGACTTCGAGCTCAGTGGC
ATCAAGTCGTATACGCGATTCTGGGGACTGCTCATGTTCGGCTCGTACAG
CGTCATTAACGTGATTGTGCTGCTGAATCTGCTCATCGCCCTGATGTCCA
TTTCGTATGGCCATGATT

BS15602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18345-PA 3375 trpl-RA 1073..2017 15..959 4675 99.7 Plus
CG18345-PB 3375 trpl-RB 1073..2017 15..959 4675 99.7 Plus
CG18345-PC 2301 trpl-RC 1..943 17..959 4665 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
trpl-RD 3755 CG18345-RD 1332..2284 15..968 4715 99.7 Plus
trpl-RB 3893 CG18345-RB 1470..2422 15..968 4715 99.7 Plus
trpl-RA 3768 CG18345-RA 1345..2297 15..968 4715 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9763056..9763450 380..774 1975 100 Plus
2R 25286936 2R 9762723..9762996 108..381 1370 100 Plus
2R 25286936 2R 9763526..9763714 771..959 900 98.4 Plus
2R 25286936 2R 9762184..9762276 15..107 465 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:00:20 has no hits.

BS15602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:24 Download gff for BS15602.5prime
Subject Subject Range Query Range Percent Splice Strand
trpl-PA 1067..2025 8..968 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:37 Download gff for BS15602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18345-PB 1067..2025 8..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 23:31:41 Download gff for BS15602.5prime
Subject Subject Range Query Range Percent Splice Strand
trpl-RA 1339..2297 8..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:52 Download gff for BS15602.5prime
Subject Subject Range Query Range Percent Splice Strand
trpl-RA 1339..2297 8..968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:52 Download gff for BS15602.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9762178..9762276 8..107 97 -> Plus
2R 9762723..9762996 108..381 100 -> Plus
2R 9763058..9763450 382..774 100 -> Plus
2R 9763530..9763722 775..968 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 23:31:41 Download gff for BS15602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5650228..5650501 108..381 100 -> Plus
arm_2R 5649683..5649781 8..107 97 -> Plus
arm_2R 5650563..5650955 382..774 100 -> Plus
arm_2R 5651035..5651227 775..968 98   Plus

BS15602.complete Sequence

2333 bp assembled on 2008-08-15

GenBank Submission: KX800967

> BS15602.complete
GAAGTTATCCTTTGACATGTGCGCCCCGAATTGCCGGACGGGCCAGTTGA
TGCGCAAGCCCTTTATGAAATTCCTGATCCATGCCTCCTCCTATTTGTTC
TTCCTGTTCATCTTGATTCTGGTGTCTCAGCGAGCGGACGATGACTTTGT
ACGCATCTTCGGGACGACCAGGATGAAGAAGGAGCTGGCGGAGCAGGAGC
TGCGTCAGCGAGGCCAGACACCCAGCAAGCTGGAGCTCATCGTGGTGATG
TACGTGATTGGGTTCGTGTGGGAGGAGGTGCAGGAGATATTTGCCGTGGG
CATGAAGAGTTATTTGCGCAACATGTGGAACTTCATCGACTTTCTGCGCA
ACAGTCTCTACGTGAGTGTGATGTGTTTAAGAGCCTTTGCCTACATCCAG
CAGGCCACAGAAATAGCAAGGGATCCGCAGATGGCTTACATACCACGCGA
GAAATGGCACGATTTTGACCCGCAACTAATAGCCGAAGGTCTCTTTGCGG
CGGCCAATGTCTTCTCGGCCTTGAAGCTGGTGCACCTGTTCAGCATCAAT
CCGCACCTGGGTCCGCTGCAGATCTCCCTAGGTCGCATGGTCATCGATAT
AGTAAAATTTTTCTTTATCTACACCCTGGTGCTGTTCGCCTTCGCCTGTG
GACTGAACCAACTGCTCTGGTACTTTGCCGCCCTGGAGAAGAGCAAGTGC
TATGTCCTGCCGGGTGGCGAGGCGGATTGGGGCTCACACGGAGACTCCTG
CATGAAATGGCGCCGGTTTGGCAACCTTTTCGAGTCCTCGCAGTCGCTCT
TTTGGGCCAGCTTTGGGATGGTCGGACTGGACGACTTCGAGCTCAGTGGC
ATCAAGTCGTATACGCGATTCTGGGGACTGCTCATGTTCGGCTCGTACAG
CGTCATTAACGTGATTGTGCTGCTGAATCTGCTCATCGCCATGATGTCCA
ATTCGTATGCCATGATTGATGAGCACTCGGACACGGAGTGGAAGTTTGCC
CGAACCAAGTTGTGGATGAGCTATTTCGAGGACAGTGCCACCCTGCCGCC
ACCCTTCAATGTCCTGCCCTCCGTCAAGTGGGTCATCAGGATTTTCCGCA
AGTCTAGCAAGACCATCGATCGTCAACGCTCCAAGAAACGAAAGGAGCAG
GAGCAGTTTAGCGAGTATGATAATATAATGCGCTCCCTGGTTTGGCGATA
TGTGGCCGCCATGCATCGCAAGTTCGAGAATAATCCCGTATCGGAGGACG
ATATCAATGAGGTCAAGAGTGAGATCAATACGATGCGTTATGAGATGCTC
GAGATATTCGAGAACAGCGGAATGGATGTTTCCTCGGCCAACAAAAAGGA
GAGGCAACCACGACCTCGGCGTATCAAAGTGTGGGAACGGCGCTTGATGA
AGGGCTTCCAGGTGGCGCCAGTGCAAAATGGCTGTGAGCTCGATGCCTTT
GGGAATGTAAACGGGCAGGGAGAAATGCAGGAGATCAAGGTGGAGTCCAT
ACCCTCAAAGCCAGCCAAGGAAACCGCCAAGGAGCGATTCCAGCGAGTGG
CCCGCACCGTACTTCTTCAGTCCACTACCCACAAGTGGAACGTGGTGCTT
CGTGCTGCCAAGGATTCCCAAATAGGTCGCTGCACCAAAAACGAGCGGAA
GAGCCTCCAGAATCTGGGCAGGGCCATCGAAGAGGCCAAGAGGCTTATAA
TGCTCAATCCAGGTTGTCCCTCCGGTCGGGAGTCACCGATTCGCATCGAG
TTCGAGGATGAGAAGACGAGCACTTTGCTGGAGCTACTCAACCAAATCAG
TGCTGAGATTAGCGATAGTGAAAAACCTAAAATTAGGCCCATCTGGCGGC
CACCACTTAAGACAGTGCCTGCCCGGGCAATGGCCGCCAATAACACCAGG
TCTCTCACAGCTCCCGAGCTGAAGATCAGCAGGAAATCCTCACCAGCTCC
CACTCCGACTCCAACTCCAGGAGTTTCCCACACTGCTCTTTCGCAATTCC
GAAACCGAGAGCTTCCATTGTGTCCCAGCAAGCTGATAGCGAACTCGGCA
CCATCTGCTCCCACTGCTCCTCCTAAGAAATCAGCACCAACTGCTCCTAC
ACCCACCTATAAGCCCACCACCCACGCCCCCTTCTCCGTGGAGGGCGGCA
ACCGGGAAAACACTCGTGCCTCAGATGGTGTGCGCTCCGATAATTCGAAT
TTCGACATCCACGTGGTCGATCTGGACGAGAAGGGCGGGCACTTGGGCAG
GGATAATGTTTCCGACATTAGCTCCATTGCCAGCACGAGTCCCCAGCGGC
CAAAGCATCGAAACTAAAAGCTTTCTAGACCAT

BS15602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
trpl-RD 3375 CG18345-PD 1073..3375 15..2317 11515 100 Plus
trpl-RB 3375 CG18345-PB 1073..3375 15..2317 11515 100 Plus
trpl-RA 3375 CG18345-PA 1073..3375 15..2317 11515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
trpl-RD 3755 CG18345-RD 1332..3635 15..2318 11520 100 Plus
trpl-RB 3893 CG18345-RB 1470..3773 15..2318 11520 100 Plus
trpl-RA 3768 CG18345-RA 1345..3648 15..2318 11520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9764771..9765398 1691..2318 3140 100 Plus
2R 25286936 2R 9763056..9763450 380..774 1975 100 Plus
2R 25286936 2R 9764377..9764714 1356..1693 1690 100 Plus
2R 25286936 2R 9762723..9762996 108..381 1370 100 Plus
2R 25286936 2R 9764100..9764321 1134..1355 1110 100 Plus
2R 25286936 2R 9763526..9763726 771..971 990 99.5 Plus
2R 25286936 2R 9763789..9763953 971..1135 825 100 Plus
2R 25286936 2R 9762184..9762276 15..107 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:47:54 has no hits.

BS15602.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:19:34 Download gff for BS15602.complete
Subject Subject Range Query Range Percent Splice Strand
trpl-RB 1434..3743 8..2318 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:13 Download gff for BS15602.complete
Subject Subject Range Query Range Percent Splice Strand
trpl-RA 1347..3645 17..2315 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:12 Download gff for BS15602.complete
Subject Subject Range Query Range Percent Splice Strand
trpl-RB 1442..3740 17..2315 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:02 Download gff for BS15602.complete
Subject Subject Range Query Range Percent Splice Strand
trpl-RA 1347..3645 17..2315 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:02 Download gff for BS15602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9762723..9762996 108..381 100 -> Plus
2R 9762186..9762276 17..107 100 -> Plus
2R 9763058..9763450 382..774 100 -> Plus
2R 9763530..9763725 775..970 100 -> Plus
2R 9763789..9763953 971..1135 100 -> Plus
2R 9764102..9764321 1136..1355 100 -> Plus
2R 9764377..9764713 1356..1692 100 -> Plus
2R 9764773..9765395 1693..2315 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:13 Download gff for BS15602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5651882..5652218 1356..1692 100 -> Plus
arm_2R 5649691..5649781 17..107 100 -> Plus
arm_2R 5650228..5650501 108..381 100 -> Plus
arm_2R 5650563..5650955 382..774 100 -> Plus
arm_2R 5651035..5651230 775..970 100 -> Plus
arm_2R 5651294..5651458 971..1135 100 -> Plus
arm_2R 5651607..5651826 1136..1355 100 -> Plus
arm_2R 5652278..5652900 1693..2315 100   Plus

BS15602.pep Sequence

Translation from 16 to 2316

> BS15602.pep
MCAPNCRTGQLMRKPFMKFLIHASSYLFFLFILILVSQRADDDFVRIFGT
TRMKKELAEQELRQRGQTPSKLELIVVMYVIGFVWEEVQEIFAVGMKSYL
RNMWNFIDFLRNSLYVSVMCLRAFAYIQQATEIARDPQMAYIPREKWHDF
DPQLIAEGLFAAANVFSALKLVHLFSINPHLGPLQISLGRMVIDIVKFFF
IYTLVLFAFACGLNQLLWYFAALEKSKCYVLPGGEADWGSHGDSCMKWRR
FGNLFESSQSLFWASFGMVGLDDFELSGIKSYTRFWGLLMFGSYSVINVI
VLLNLLIAMMSNSYAMIDEHSDTEWKFARTKLWMSYFEDSATLPPPFNVL
PSVKWVIRIFRKSSKTIDRQRSKKRKEQEQFSEYDNIMRSLVWRYVAAMH
RKFENNPVSEDDINEVKSEINTMRYEMLEIFENSGMDVSSANKKERQPRP
RRIKVWERRLMKGFQVAPVQNGCELDAFGNVNGQGEMQEIKVESIPSKPA
KETAKERFQRVARTVLLQSTTHKWNVVLRAAKDSQIGRCTKNERKSLQNL
GRAIEEAKRLIMLNPGCPSGRESPIRIEFEDEKTSTLLELLNQISAEISD
SEKPKIRPIWRPPLKTVPARAMAANNTRSLTAPELKISRKSSPAPTPTPT
PGVSHTALSQFRNRELPLCPSKLIANSAPSAPTAPPKKSAPTAPTPTYKP
TTHAPFSVEGGNRENTRASDGVRSDNSNFDIHVVDLDEKGGHLGRDNVSD
ISSIASTSPQRPKHRN*

BS15602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
trpl-PD 1124 CG18345-PD 359..1124 1..766 3995 100 Plus
trpl-PB 1124 CG18345-PB 359..1124 1..766 3995 100 Plus
trpl-PA 1124 CG18345-PA 359..1124 1..766 3995 100 Plus
trp-PA 1275 CG7875-PA 354..900 3..564 1244 45.2 Plus
Trpgamma-PB 1128 CG5996-PB 340..822 3..468 1234 49.4 Plus