Clone BS15603 Report

Search the DGRC for BS15603

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptJupiter-RA
Protein status:BS15603.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15603.3prime Sequence

624 bp (624 high quality bases) assembled on 2006-12-21

> BS15603.3prime
AGGGNCNAGAAAGCTTTTACCCTAGGGGGGACGAGCAGCCGCCTGGGGGA
ATGCGGNTCNTGTTGATCACCGGAGTGCCGCCATTGGACGACTCCTGTCG
CTGGGAATACTCGTTGGCTACGACCTTGTAGCCCTCGCCTGTGACGGGGT
TGCCCTTGCTCATATTGCGGAAGACTGATCTCGAGCCACTGTTCATCTTG
AGGTTCTCGGTGGAGGACGACACCGAAGACGAGGCCGAGGACACCGATCC
GCTCTTGCCGTTGTAGTGGCCATTGGTGGTCAGCAGCTTCTGGGCGGCAA
CGGCCTCTGTGTTCTGACCAAAGGGAATGCTGCTCTTCATGTGGTTCTTG
CCGGGGGTGATCGGGCGGGTGGGCTCCCCAAACAGCCGAGAGTGGGAGTC
GACGGTCTTCTGGCCGCGACGTGGTGCATCACCGTTGTTTTTCACTCCAT
TATCTTTCTCGGCAGCGAATATGTTGGACGCCATGCGATTCTTCACGTTC
CTGGGGGTCTGCGGCATCTCCGATCCAAAGATGTCGCTCGATCCGCCGCC
CGGGGGCCTCAGCACCTTGCTGCTGGCCTGATTATCGGTGCAATCAAAGT
TAGAGATCATGTCGACTGATAACT

BS15603.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31363-PA 594 Jupiter-RA 1..581 610..30 2817 99.3 Minus
CG31363-PD 576 Jupiter-RD 1..436 610..175 2180 100 Minus
CG31363-PC 594 Jupiter-RC 63..454 566..175 1960 100 Minus
CG31363-PH 609 Jupiter-RH 211..469 433..175 1295 100 Minus
CG31363-PE 627 Jupiter-RE 229..487 433..175 1295 100 Minus
CG31363-PH 609 Jupiter-RH 1..178 610..433 890 100 Minus
CG31363-PE 627 Jupiter-RE 63..196 566..433 670 100 Minus
CG31363-PH 609 Jupiter-RH 470..596 156..30 547 96.8 Minus
CG31363-PD 576 Jupiter-RD 437..563 156..30 547 96.8 Minus
CG31363-PE 627 Jupiter-RE 488..614 156..30 547 96.8 Minus
CG31363-PC 594 Jupiter-RC 455..581 156..30 547 96.8 Minus
CG31363-PB 558 Jupiter-RB 419..545 156..30 547 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RA 1535 CG31363-RA 160..740 610..30 2853 99.3 Minus
Jupiter-RD 1517 CG31363-RD 160..722 610..30 2573 96.2 Minus
Jupiter-RC 1581 CG31363-RC 268..786 566..30 2353 95.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11592367..11592625 175..433 1295 100 Plus
3R 32079331 3R 11593631..11593770 431..570 685 99.3 Plus
3R 32079331 3R 11591181..11591307 30..156 583 96.9 Plus
3R 32079331 3R 11619703..11619747 566..610 225 100 Plus
Blast to na_te.dros performed on 2015-01-30 03:06:24 has no hits.

BS15603.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:25 Download gff for BS15603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31363-PA 1..587 24..610 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:38 Download gff for BS15603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31363-PA 1..587 24..610 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:29:48 Download gff for BS15603.3prime
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 160..746 24..610 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:07:45 Download gff for BS15603.3prime
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 160..746 24..610 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:07:45 Download gff for BS15603.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11591175..11591307 24..156 94 <- Plus
3R 11591995..11592012 157..174 100 <- Plus
3R 11592367..11592624 175..432 100 <- Plus
3R 11593633..11593766 433..566 100 <- Plus
3R 11619704..11619747 567..610 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:29:48 Download gff for BS15603.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7416897..7417029 24..156 94 <- Plus
arm_3R 7417717..7417734 157..174 100 <- Plus
arm_3R 7418089..7418346 175..432 100 <- Plus
arm_3R 7419355..7419488 433..566 100 <- Plus
arm_3R 7445426..7445469 567..610 100   Plus

BS15603.5prime Sequence

624 bp (624 high quality bases) assembled on 2006-12-21

> BS15603.5prime
GAAGTTATCCTTTGACATGATCTCTAACTTTGATTGCACCGATAATCAGG
CCAGCAGCAAGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACATCTTT
GGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGGCGTC
CAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGTGATG
CACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTTTGGG
GAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCAGCAT
TCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTGACCA
CCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTCGTCT
TCGGTGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGAGATC
AGTCTTCCGCAATATGAGCAAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGTAAAAGCTTTCTAGACC

BS15603.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31363-PA 594 Jupiter-RA 1..594 17..610 2970 100 Plus
CG31363-PD 576 Jupiter-RD 1..436 17..452 2180 100 Plus
CG31363-PC 594 Jupiter-RC 63..454 61..452 1960 100 Plus
CG31363-PH 609 Jupiter-RH 211..469 194..452 1295 100 Plus
CG31363-PE 627 Jupiter-RE 229..487 194..452 1295 100 Plus
CG31363-PH 609 Jupiter-RH 1..178 17..194 890 100 Plus
CG31363-PH 609 Jupiter-RH 470..609 471..610 700 100 Plus
CG31363-PD 576 Jupiter-RD 437..576 471..610 700 100 Plus
CG31363-PE 627 Jupiter-RE 488..627 471..610 700 100 Plus
CG31363-PC 594 Jupiter-RC 455..594 471..610 700 100 Plus
CG31363-PB 558 Jupiter-RB 419..558 471..610 700 100 Plus
CG31363-PE 627 Jupiter-RE 63..196 61..194 670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RA 1535 CG31363-RA 160..753 17..610 2970 100 Plus
Jupiter-RD 1517 CG31363-RD 160..735 17..610 2690 97 Plus
Jupiter-RC 1581 CG31363-RC 268..799 61..610 2470 96.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11592367..11592625 452..194 1295 100 Minus
3R 32079331 3R 11591168..11591307 610..471 700 100 Minus
3R 32079331 3R 11593631..11593770 196..57 685 99.3 Minus
3R 32079331 3R 11619703..11619747 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:26:29 has no hits.

BS15603.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:26 Download gff for BS15603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31363-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:40 Download gff for BS15603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31363-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:15:51 Download gff for BS15603.5prime
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 160..753 17..610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:55 Download gff for BS15603.5prime
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 160..753 17..610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:55 Download gff for BS15603.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11593633..11593766 61..194 100 <- Minus
3R 11619704..11619747 17..60 100   Minus
3R 11591168..11591307 471..610 100 <- Minus
3R 11591995..11592012 453..470 100 <- Minus
3R 11592367..11592624 195..452 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:15:51 Download gff for BS15603.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7416890..7417029 471..610 100 <- Minus
arm_3R 7417717..7417734 453..470 100 <- Minus
arm_3R 7418089..7418346 195..452 100 <- Minus
arm_3R 7419355..7419488 61..194 100 <- Minus
arm_3R 7445426..7445469 17..60 100   Minus

BS15603.complete Sequence

626 bp assembled on 2006-11-29

GenBank Submission: FJ637940

> BS15603.complete
GAAGTTATCAGTCGACATGATCTCTAACTTTGATTGCACCGATAATCAGG
CCAGCAGCAAGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACATCTTT
GGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGGCGTC
CAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGTGATG
CACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTTTGGG
GAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCAGCAT
TCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTGACCA
CCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTCGTCT
TCGGTGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGAGATC
AGTCTTCCGCAATATGAGCAAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGTAAAAGCTTTCTAGACCAT

BS15603.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RA 594 CG31363-PA 1..594 17..610 2970 100 Plus
Jupiter-RD 576 CG31363-PD 1..576 17..610 2665 97 Plus
Jupiter-RC 594 CG31363-PC 63..594 61..610 2445 96.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RA 1535 CG31363-RA 160..753 17..610 2970 100 Plus
Jupiter-RD 1517 CG31363-RD 160..735 17..610 2665 97 Plus
Jupiter-RC 1581 CG31363-RC 268..799 61..610 2445 96.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11592367..11592625 452..194 1295 100 Minus
3R 32079331 3R 11591168..11591307 610..471 700 100 Minus
3R 32079331 3R 11593631..11593770 196..57 685 99.3 Minus
3R 32079331 3R 11619703..11619747 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:05:56 has no hits.

BS15603.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:02 Download gff for BS15603.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:41 Download gff for BS15603.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 188..779 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:52 Download gff for BS15603.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 160..751 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:02 Download gff for BS15603.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 188..781 17..610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:52 Download gff for BS15603.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RA 160..751 17..608 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:52 Download gff for BS15603.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11591170..11591307 471..608 100 <- Minus
3R 11591995..11592012 453..470 100 <- Minus
3R 11592367..11592624 195..452 100 <- Minus
3R 11593633..11593766 61..194 100 <- Minus
3R 11619704..11619747 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:52 Download gff for BS15603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7416892..7417029 471..608 100 <- Minus
arm_3R 7417717..7417734 453..470 100 <- Minus
arm_3R 7418089..7418346 195..452 100 <- Minus
arm_3R 7419355..7419488 61..194 100 <- Minus
arm_3R 7445426..7445469 17..60 100   Minus

BS15603.pep Sequence

Translation from 16 to 609

> BS15603.pep
MISNFDCTDNQASSKVLRPPGGGSSDIFGSEMPQTPRNVKNRMASNIFAA
EKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSSIPFGQN
TEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSRSVFRNM
SKGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*

BS15603.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-PA 197 CG31363-PA 1..197 1..197 1027 100 Plus
Jupiter-PD 191 CG31363-PD 1..191 1..197 976 96.4 Plus
Jupiter-PH 202 CG31363-PH 1..202 1..197 954 91.3 Plus
Jupiter-PC 197 CG31363-PC 17..197 11..197 904 94.1 Plus
Jupiter-PE 208 CG31363-PE 17..208 11..197 882 88.9 Plus