Clone Sequence Records
BS15603.3prime Sequence
624 bp (624 high quality bases) assembled on 2006-12-21
> BS15603.3prime
AGGGNCNAGAAAGCTTTTACCCTAGGGGGGACGAGCAGCCGCCTGGGGGA
ATGCGGNTCNTGTTGATCACCGGAGTGCCGCCATTGGACGACTCCTGTCG
CTGGGAATACTCGTTGGCTACGACCTTGTAGCCCTCGCCTGTGACGGGGT
TGCCCTTGCTCATATTGCGGAAGACTGATCTCGAGCCACTGTTCATCTTG
AGGTTCTCGGTGGAGGACGACACCGAAGACGAGGCCGAGGACACCGATCC
GCTCTTGCCGTTGTAGTGGCCATTGGTGGTCAGCAGCTTCTGGGCGGCAA
CGGCCTCTGTGTTCTGACCAAAGGGAATGCTGCTCTTCATGTGGTTCTTG
CCGGGGGTGATCGGGCGGGTGGGCTCCCCAAACAGCCGAGAGTGGGAGTC
GACGGTCTTCTGGCCGCGACGTGGTGCATCACCGTTGTTTTTCACTCCAT
TATCTTTCTCGGCAGCGAATATGTTGGACGCCATGCGATTCTTCACGTTC
CTGGGGGTCTGCGGCATCTCCGATCCAAAGATGTCGCTCGATCCGCCGCC
CGGGGGCCTCAGCACCTTGCTGCTGGCCTGATTATCGGTGCAATCAAAGT
TAGAGATCATGTCGACTGATAACT
BS15603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31363-PA | 594 | Jupiter-RA | 1..581 | 610..30 | 2817 | 99.3 | Minus |
CG31363-PD | 576 | Jupiter-RD | 1..436 | 610..175 | 2180 | 100 | Minus |
CG31363-PC | 594 | Jupiter-RC | 63..454 | 566..175 | 1960 | 100 | Minus |
CG31363-PH | 609 | Jupiter-RH | 211..469 | 433..175 | 1295 | 100 | Minus |
CG31363-PE | 627 | Jupiter-RE | 229..487 | 433..175 | 1295 | 100 | Minus |
CG31363-PH | 609 | Jupiter-RH | 1..178 | 610..433 | 890 | 100 | Minus |
CG31363-PE | 627 | Jupiter-RE | 63..196 | 566..433 | 670 | 100 | Minus |
CG31363-PH | 609 | Jupiter-RH | 470..596 | 156..30 | 547 | 96.8 | Minus |
CG31363-PD | 576 | Jupiter-RD | 437..563 | 156..30 | 547 | 96.8 | Minus |
CG31363-PE | 627 | Jupiter-RE | 488..614 | 156..30 | 547 | 96.8 | Minus |
CG31363-PC | 594 | Jupiter-RC | 455..581 | 156..30 | 547 | 96.8 | Minus |
CG31363-PB | 558 | Jupiter-RB | 419..545 | 156..30 | 547 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RA | 1535 | CG31363-RA | 160..740 | 610..30 | 2853 | 99.3 | Minus |
Jupiter-RD | 1517 | CG31363-RD | 160..722 | 610..30 | 2573 | 96.2 | Minus |
Jupiter-RC | 1581 | CG31363-RC | 268..786 | 566..30 | 2353 | 95.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 03:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 175..433 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 11593631..11593770 | 431..570 | 685 | 99.3 | Plus |
3R | 32079331 | 3R | 11591181..11591307 | 30..156 | 583 | 96.9 | Plus |
3R | 32079331 | 3R | 11619703..11619747 | 566..610 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 03:06:24 has no hits.
BS15603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:25 Download gff for
BS15603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PA | 1..587 | 24..610 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:38 Download gff for
BS15603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PA | 1..587 | 24..610 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:29:48 Download gff for
BS15603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..746 | 24..610 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:07:45 Download gff for
BS15603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..746 | 24..610 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:07:45 Download gff for
BS15603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11591175..11591307 | 24..156 | 94 | <- | Plus |
3R | 11591995..11592012 | 157..174 | 100 | <- | Plus |
3R | 11592367..11592624 | 175..432 | 100 | <- | Plus |
3R | 11593633..11593766 | 433..566 | 100 | <- | Plus |
3R | 11619704..11619747 | 567..610 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:29:48 Download gff for
BS15603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416897..7417029 | 24..156 | 94 | <- | Plus |
arm_3R | 7417717..7417734 | 157..174 | 100 | <- | Plus |
arm_3R | 7418089..7418346 | 175..432 | 100 | <- | Plus |
arm_3R | 7419355..7419488 | 433..566 | 100 | <- | Plus |
arm_3R | 7445426..7445469 | 567..610 | 100 | | Plus |
BS15603.5prime Sequence
624 bp (624 high quality bases) assembled on 2006-12-21
> BS15603.5prime
GAAGTTATCCTTTGACATGATCTCTAACTTTGATTGCACCGATAATCAGG
CCAGCAGCAAGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACATCTTT
GGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGGCGTC
CAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGTGATG
CACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTTTGGG
GAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCAGCAT
TCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTGACCA
CCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTCGTCT
TCGGTGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGAGATC
AGTCTTCCGCAATATGAGCAAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGTAAAAGCTTTCTAGACC
BS15603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31363-PA | 594 | Jupiter-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
CG31363-PD | 576 | Jupiter-RD | 1..436 | 17..452 | 2180 | 100 | Plus |
CG31363-PC | 594 | Jupiter-RC | 63..454 | 61..452 | 1960 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 211..469 | 194..452 | 1295 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 229..487 | 194..452 | 1295 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 1..178 | 17..194 | 890 | 100 | Plus |
CG31363-PH | 609 | Jupiter-RH | 470..609 | 471..610 | 700 | 100 | Plus |
CG31363-PD | 576 | Jupiter-RD | 437..576 | 471..610 | 700 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 488..627 | 471..610 | 700 | 100 | Plus |
CG31363-PC | 594 | Jupiter-RC | 455..594 | 471..610 | 700 | 100 | Plus |
CG31363-PB | 558 | Jupiter-RB | 419..558 | 471..610 | 700 | 100 | Plus |
CG31363-PE | 627 | Jupiter-RE | 63..196 | 61..194 | 670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RA | 1535 | CG31363-RA | 160..753 | 17..610 | 2970 | 100 | Plus |
Jupiter-RD | 1517 | CG31363-RD | 160..735 | 17..610 | 2690 | 97 | Plus |
Jupiter-RC | 1581 | CG31363-RC | 268..799 | 61..610 | 2470 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 452..194 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 11591168..11591307 | 610..471 | 700 | 100 | Minus |
3R | 32079331 | 3R | 11593631..11593770 | 196..57 | 685 | 99.3 | Minus |
3R | 32079331 | 3R | 11619703..11619747 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:26:29 has no hits.
BS15603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:26 Download gff for
BS15603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:40 Download gff for
BS15603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31363-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:15:51 Download gff for
BS15603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..753 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:50:55 Download gff for
BS15603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..753 | 17..610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:50:55 Download gff for
BS15603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11593633..11593766 | 61..194 | 100 | <- | Minus |
3R | 11619704..11619747 | 17..60 | 100 | | Minus |
3R | 11591168..11591307 | 471..610 | 100 | <- | Minus |
3R | 11591995..11592012 | 453..470 | 100 | <- | Minus |
3R | 11592367..11592624 | 195..452 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:15:51 Download gff for
BS15603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416890..7417029 | 471..610 | 100 | <- | Minus |
arm_3R | 7417717..7417734 | 453..470 | 100 | <- | Minus |
arm_3R | 7418089..7418346 | 195..452 | 100 | <- | Minus |
arm_3R | 7419355..7419488 | 61..194 | 100 | <- | Minus |
arm_3R | 7445426..7445469 | 17..60 | 100 | | Minus |
BS15603.complete Sequence
626 bp assembled on 2006-11-29
GenBank Submission: FJ637940
> BS15603.complete
GAAGTTATCAGTCGACATGATCTCTAACTTTGATTGCACCGATAATCAGG
CCAGCAGCAAGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACATCTTT
GGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGGCGTC
CAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGTGATG
CACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTTTGGG
GAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCAGCAT
TCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTGACCA
CCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTCGTCT
TCGGTGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGAGATC
AGTCTTCCGCAATATGAGCAAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGTAAAAGCTTTCTAGACCAT
BS15603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RA | 594 | CG31363-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Jupiter-RD | 576 | CG31363-PD | 1..576 | 17..610 | 2665 | 97 | Plus |
Jupiter-RC | 594 | CG31363-PC | 63..594 | 61..610 | 2445 | 96.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-RA | 1535 | CG31363-RA | 160..753 | 17..610 | 2970 | 100 | Plus |
Jupiter-RD | 1517 | CG31363-RD | 160..735 | 17..610 | 2665 | 97 | Plus |
Jupiter-RC | 1581 | CG31363-RC | 268..799 | 61..610 | 2445 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11592367..11592625 | 452..194 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 11591168..11591307 | 610..471 | 700 | 100 | Minus |
3R | 32079331 | 3R | 11593631..11593770 | 196..57 | 685 | 99.3 | Minus |
3R | 32079331 | 3R | 11619703..11619747 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:05:56 has no hits.
BS15603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:02 Download gff for
BS15603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:41 Download gff for
BS15603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 188..779 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:52 Download gff for
BS15603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..751 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:02 Download gff for
BS15603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 188..781 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:52 Download gff for
BS15603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jupiter-RA | 160..751 | 17..608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:52 Download gff for
BS15603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11591170..11591307 | 471..608 | 100 | <- | Minus |
3R | 11591995..11592012 | 453..470 | 100 | <- | Minus |
3R | 11592367..11592624 | 195..452 | 100 | <- | Minus |
3R | 11593633..11593766 | 61..194 | 100 | <- | Minus |
3R | 11619704..11619747 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:52 Download gff for
BS15603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7416892..7417029 | 471..608 | 100 | <- | Minus |
arm_3R | 7417717..7417734 | 453..470 | 100 | <- | Minus |
arm_3R | 7418089..7418346 | 195..452 | 100 | <- | Minus |
arm_3R | 7419355..7419488 | 61..194 | 100 | <- | Minus |
arm_3R | 7445426..7445469 | 17..60 | 100 | | Minus |
BS15603.pep Sequence
Translation from 16 to 609
> BS15603.pep
MISNFDCTDNQASSKVLRPPGGGSSDIFGSEMPQTPRNVKNRMASNIFAA
EKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSSIPFGQN
TEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSRSVFRNM
SKGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*
BS15603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jupiter-PA | 197 | CG31363-PA | 1..197 | 1..197 | 1027 | 100 | Plus |
Jupiter-PD | 191 | CG31363-PD | 1..191 | 1..197 | 976 | 96.4 | Plus |
Jupiter-PH | 202 | CG31363-PH | 1..202 | 1..197 | 954 | 91.3 | Plus |
Jupiter-PC | 197 | CG31363-PC | 17..197 | 11..197 | 904 | 94.1 | Plus |
Jupiter-PE | 208 | CG31363-PE | 17..208 | 11..197 | 882 | 88.9 | Plus |