Clone Sequence Records
BS15604.complete Sequence
2204 bp assembled on 2009-12-07
GenBank Submission: KX800403
> BS15604.complete
GAAGTTATCAGTCGACATGGCCAGTAAAACCGCGCACTTCGTCCTGCCTA
ACACGCAGCCCATTGCCGATTTGGACTGCAAGAGTGCCTTCGAGAATCTC
ACCGAGAAGGAGAAGCTCTACGCCCACCACTTCAGCCAGGCCTCCTGGGA
CGGCGGACTCATTGCCTTGATCCAGTCCAGTCCGGAGGCGCCGCTCATCT
TCTCCCTGCTGCACCGCATTTTCCTAGCCGAAAAGATTCCTGTTCTTAGG
GCGAAAGCCCTGGAGGCGGGAGTGTCTGCTGATGATTTTACGGCCTTCCT
AGTGTACGCCTGCGGTGTGTTCGCCAACGCGGGCAACTACAAGGGTATGG
GCGACAGCAAGATCGTTCCCAATCTCTCAGAAAAGCAATTTGAGACTATA
GTAAAGGCATCCGCTGCTTACAGCGATGAGCCGCGCGTAGGCAAGATCTT
CGAGAAGGTCAAGAATCTGATTTATGCGCTCGAGTCGCGTAACGAGATCC
TGGGCTTTGCTCCCGACGGAATCACCACCTACTGGTCGGATAACTGCACC
AAGGAGGACTCCGAGATCGTGAACGCTTGGCTGACCTCAAAGCGTATCGA
ACCGTACATGTGCCGGACCTTCAAGATAGTTGAAAATGGTCAAACCGTCT
ACGATGTAAAGCTGGGCTCCGTGGCGGAGTCCACGCAGGACGGCATCACA
CTTCCGCTGGAAGAGTATAATGGCAACAAGTTTAGGGTGACACGCGGTGA
TTACCAGAAGCTGCTTCAGCGCGTCAACCAGCATCTGCTGCAGGCCCAGA
AATACGCAGCCAATGAAAACGAGTCCAAGATGATCGAGCACTATGTCCGA
TCCTTTGAACAGGGCTCGCTGGACGAGCACAAGAACGGATCGCGTTGGTG
GATCAAGGACAAGGGACCTGTCATCGAGACCTACATTGGTTTCATTGAGA
CATACAGGGATCCTGCTGGAGGTCGGGCTGAATTCGAGGGCTTCGTGGCC
ATGGTGAACAAGGAGAGCTCGGCCAAATTCTCCGAGCTGGTGAACCGCGC
CGAGAAACTAATAGAGTACCTGCCCTGGACGGAGCCTTACGAGAAGGACT
CTTACCTGAAGCCAGACTTCACATCCCTGGATGTCCTCACATTTGCCGGC
AGCGGAGTACCAGCGGGCATCAATATTCCCAATTACGACGAAATCCGCCA
GGATGAAGGCTTCAAGAACGTCTCGCTGGGCAATGTGCTGGCCAACATCA
ACCGCAAGGATCCCATTCCTTTCCTCACCGAGGAGGATCAAACTCTGATG
AAAGAGTACAAGGTGAAGGCTTTTGAGGTGCAAGTGGGCCTCCATGAACT
CCTAGGCCATGGTAGTGGCAAGCTATTCCGCATCGACGAAAATGGTGTGT
ACAACTTTGACAAGGAGAACACTAAGAACCTGGTCACCGGTGAACCCATC
ACCAAGTGGTATCTTCCTGGAGAAACTTACGACACCAAGTTCGGAGCAAT
TGGTTCCTCGTACGAGGAATGCCGCGCCGAGGCGGTGGGCTTGTATCTCT
CCCTGCAGCGTGACATCCTGGAGATCTTTGGCTTCAAGGACAAAGCCGAG
CAGGACAACATCATCTATGTCAACTGGCTGAGTCTCATCTGGAACGGCAT
GGGTGTGGCTCTGGAAATGTTCAACCCGAAGTCCAAGCTGTGGCTCCAGG
CGCACTCTCGCGCTCGTTTCGTGATCATGAAGGTGCTGCTGGAGGCAGGC
GAAGGACTCGTTAAGGTCGAGGAAACCGAAAAGGGTAAAAACCTTTTGCT
GACGGTGGATCGCAGCAAGATCGATACCGTGGGCAGGAAGGCGCTGGGCG
ATTTCCTGACCAAGCTGCAGGTGTACAAATCCACCGCCGACATCGAGGCA
GCTTCCAAGATGTACGAACACTACTCGAAGGTCGACGAGAGCGGATCGCA
TCCGTGGGCCAAGTGGCGGGATATCTGCCTGGCGCACAAGAAGCCGCGTA
TGATTCTCGTCCAGGCCAACACGGCGATCGGCCAGGACCAAAAGGTCCAG
CTGAAGACCTACGAGCCCACCCACGAGGGGTACATCCAGTCATGGGTGGA
GCGCTACCCCAACACTGACATCGACGATCTTCTGGAGAGCATCGTGGAGA
AGGACAAGAAGTATTTCCCGACTGCCTTCAACAACTGAAAGCTTTCTAGA
CCAT
BS15604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DppIII-RC | 2361 | CG7415-PC | 190..2361 | 17..2188 | 10860 | 100 | Plus |
| DppIII-RB | 2172 | CG7415-PB | 1..2172 | 17..2188 | 10860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DppIII-RC | 2613 | CG7415-RC | 331..2502 | 17..2188 | 10860 | 100 | Plus |
| DppIII-RB | 2398 | CG7415-RB | 116..2287 | 17..2188 | 10860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8345458..8347354 | 292..2188 | 9485 | 100 | Plus |
| 3R | 32079331 | 3R | 8345124..8345400 | 17..293 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:46:41 has no hits.
BS15604.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:17 Download gff for
BS15604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RC | 187..2361 | 14..2188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:13 Download gff for
BS15604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RC | 266..2436 | 17..2187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:26 Download gff for
BS15604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 116..2286 | 17..2187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:55 Download gff for
BS15604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RC | 266..2436 | 17..2187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:35 Download gff for
BS15604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 116..2286 | 17..2187 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:35 Download gff for
BS15604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8345124..8345399 | 17..292 | 100 | -> | Plus |
| 3R | 8345459..8347353 | 293..2187 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:26 Download gff for
BS15604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4170846..4171121 | 17..292 | 100 | -> | Plus |
| arm_3R | 4171181..4173075 | 293..2187 | 100 | | Plus |
BS15604.3prime Sequence
932 bp (802 high quality bases) assembled on 2006-12-21
> BS15604.3prime
ATGGTCTAGAAAGCTTTCAGTTTTTGAAGGCAGTCGGGAAATACTTCTTG
TCCTTCTCCACGATGCTCTCCAGAAGATCGTCGATGTCAGTGTTGGGGTA
GCGCTCCACCCATGACTGGATGTACCCCTCGTGGGTGGGCTCGTAGGTCT
TCAGCTGGACCTTTTGGTCCTGGCCGATCGCCGTGTTGGCCTGGACGAGA
ATCATACGCGGCTTCTTGTGCGCCAGGCAGATATCCCGCCACTTGGCCCA
CGGATGCGATCCGCTCTCGTCGACCTTCGAGTAGTGTTCGTACATCTTGG
AAGCTGCCTCGATGTCGGCGGTGGATTTGTACACCTGCAGCTTGGTCAGG
AAATCGCCCAGCGCCTTCCTGCCCACGGTATCGATCTTGCTGCGATCCAC
CGTCAGCAAAAGGTTTTTACCCTTTTCGGTTTCCTCGACCTTAACGAGTC
CTTCGCCTGCCTCCAGCAGCACCTTCATGATCACGAAACGAGCGCGAGAG
TGCGCCTGGAGCCACAGCTTGGACTTCGGGTTGAACATTTCCAGAGCCAC
ACCCATGCCGTTCCAGATGAGACTCAGCCAGTTGACATAGATGATGTTGT
CCTGCTCGGCTTTGTCCTTGAAGCCAAAGATCTCCAGGATGTCACGCTGC
AGGGAGAGATACAAGCCCACCGCCTCGGCGCGGCATTCCTCGTACGAGGA
ACCAATTGCTCCGAACTTGGTGTCGTAAGTTTCTCCAGGAAGATACCACT
TGGTGATGGGTTCACCGGTGACCAGGTTCTTAGTGTTCTCCTTGTCAAAG
TTGTACACACCATTTTCGTCGATGCGGAATAGCTTGCCACTACCATGGCC
TAAGAGTTCATGGAGGCCCACTTGCACCTCAAAGCCTTCAACTTGTACTC
TTTCATCAGAGTTTGATCTTCTCGGTGAGGAA
BS15604.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7415-PB | 2172 | DppIII-RB | 1306..2172 | 883..17 | 4285 | 99.7 | Minus |
| CG7415-PC | 2361 | DppIII-RC | 1495..2361 | 883..17 | 4285 | 99.7 | Minus |
| CG7415-PB | 2172 | DppIII-RB | 1270..1307 | 918..881 | 165 | 97.3 | Minus |
| CG7415-PC | 2361 | DppIII-RC | 1459..1496 | 918..881 | 165 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DppIII-RC | 2613 | CG7415-RC | 1585..2502 | 932..17 | 4480 | 99.3 | Minus |
| DppIII-RB | 2398 | CG7415-RB | 1370..2287 | 932..17 | 4480 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8346437..8347354 | 932..17 | 4430 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:22:44 has no hits.
BS15604.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:27 Download gff for
BS15604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7415-PC | 1446..2361 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:41 Download gff for
BS15604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7415-PC | 1446..2361 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 13:01:28 Download gff for
BS15604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 1370..2296 | 9..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:03 Download gff for
BS15604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 1370..2296 | 9..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:03 Download gff for
BS15604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8346437..8347363 | 9..932 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 13:01:28 Download gff for
BS15604.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4172159..4173085 | 9..932 | 99 | | Minus |
BS15604.5prime Sequence
879 bp (790 high quality bases) assembled on 2006-12-21
> BS15604.5prime
GAAGTTATCCTTCGACATGGCCAGTAAAACCGCGCACTTCGTCCTGCCTA
ACACGCAGCCCATTGCCGATTTGGACTGCAAGAGTGCCTTCGAGAATCTC
ACCGAGAAGGAGAAGCTCTACGCCCACCACTTCAGCCAGGCCTCCTGGGA
CGGCGGACTCATTGCCTTGATCCAGTCCAGTCCGGAGGCGCCGCTCATCT
TCTCCCTGCTGCACCGCATTTTCCTAGCCGAAAAGATTCCTGTTCTTAGG
GCGAAAGCCCTGGAGGCGGGAGTGTCTGCTGATGATTTTACGGCCTTCCT
AGTGTACGCCTGCGGTGTGTTCGCCAACGCGGGCAACTACAAGGGTATGG
GCGACAGCAAGATCGTTCCCAATCTCTCAGAAAAGCAATTTGAGACTATA
GTAAAGGCATCCGCTGCTTACAGCGATGAGCCGCGCGTAGGCAAGATCTT
CGAGAAGGTCAAGAATCTGATTTATGCGCTCGAGTCGCGTAACGAGATCC
TGGGCTTTGCTCCCGACGGAATCACCACCTACTGGTCGGATAACTGCACC
AAGGAGGACTCCGAGATCGTGAACGCTTGGCTGACCTCAAAGCGTATCGA
ACCGTACATGTGCCGGACCTTCAAGATAGTTGAAAATGGTCAAACCGTCT
ACGATGTAAAGCTGGGCTCCGTGGCGGAGTCCACGCAGGACGGCATCACA
CTTCCGCTGGAAGAGTATAATGGCAACAAGTTTAGGGTGACACGCGGTGA
TTACCAGAAGCTGCTTCAGCGCGTCAACCAGCATCTGCTGCAGGCCCAGA
AATACGCAGCCAATGAAAACGAGTCCAAAATGATCGAGCACTATGTCCGA
TCCTTTGAACAGGGCTCGCTGGACGAGCA
BS15604.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7415-PB | 2172 | DppIII-RB | 1..863 | 17..879 | 4290 | 99.8 | Plus |
| CG7415-PC | 2361 | DppIII-RC | 190..1052 | 17..879 | 4290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 02:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DppIII-RC | 2613 | CG7415-RC | 331..1193 | 17..879 | 4300 | 99.9 | Plus |
| DppIII-RB | 2398 | CG7415-RB | 116..978 | 17..879 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 02:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8345458..8346045 | 292..879 | 2925 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8345124..8345400 | 17..293 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 02:43:54 has no hits.
BS15604.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:28 Download gff for
BS15604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7415-PC | 187..1051 | 14..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:43 Download gff for
BS15604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7415-PC | 187..1051 | 14..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:28:42 Download gff for
BS15604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 113..977 | 14..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:04:30 Download gff for
BS15604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 113..977 | 14..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 04:04:30 Download gff for
BS15604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8345121..8345399 | 14..292 | 99 | -> | Plus |
| 3R | 8345459..8346044 | 293..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:28:42 Download gff for
BS15604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4170843..4171121 | 14..292 | 99 | -> | Plus |
| arm_3R | 4171181..4171766 | 293..878 | 99 | | Plus |
BS15604.pep Sequence
Translation from 16 to 2187
> BS15604.pep
MASKTAHFVLPNTQPIADLDCKSAFENLTEKEKLYAHHFSQASWDGGLIA
LIQSSPEAPLIFSLLHRIFLAEKIPVLRAKALEAGVSADDFTAFLVYACG
VFANAGNYKGMGDSKIVPNLSEKQFETIVKASAAYSDEPRVGKIFEKVKN
LIYALESRNEILGFAPDGITTYWSDNCTKEDSEIVNAWLTSKRIEPYMCR
TFKIVENGQTVYDVKLGSVAESTQDGITLPLEEYNGNKFRVTRGDYQKLL
QRVNQHLLQAQKYAANENESKMIEHYVRSFEQGSLDEHKNGSRWWIKDKG
PVIETYIGFIETYRDPAGGRAEFEGFVAMVNKESSAKFSELVNRAEKLIE
YLPWTEPYEKDSYLKPDFTSLDVLTFAGSGVPAGINIPNYDEIRQDEGFK
NVSLGNVLANINRKDPIPFLTEEDQTLMKEYKVKAFEVQVGLHELLGHGS
GKLFRIDENGVYNFDKENTKNLVTGEPITKWYLPGETYDTKFGAIGSSYE
ECRAEAVGLYLSLQRDILEIFGFKDKAEQDNIIYVNWLSLIWNGMGVALE
MFNPKSKLWLQAHSRARFVIMKVLLEAGEGLVKVEETEKGKNLLLTVDRS
KIDTVGRKALGDFLTKLQVYKSTADIEAASKMYEHYSKVDESGSHPWAKW
RDICLAHKKPRMILVQANTAIGQDQKVQLKTYEPTHEGYIQSWVERYPNT
DIDDLLESIVEKDKKYFPTAFNN*
BS15604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DppIII-PC | 786 | CG7415-PC | 64..786 | 1..723 | 3784 | 100 | Plus |
| DppIII-PB | 723 | CG7415-PB | 1..723 | 1..723 | 3784 | 100 | Plus |
