Clone Sequence Records
BS15605.3prime Sequence
820 bp (745 high quality bases) assembled on 2006-12-21
> BS15605.3prime
ATGGNCTAGAAAGCTTTTACCTTATATGGGCAAACAGATTCAGAACGGAC
TTGTTCTCCTTCTGACTGCGCGCCTTGCTGAATACGTTCCAAAATCTCAG
CGTCTCGTCGCCGGCGCCCGTAACAATAGCCTCACCATCGGGACTCAGCG
CCAGATAGAGCACACGATACGAATGGCCCGTCAGCTTGGCCACTTGCGTC
AGGGAGGGATATTTCCACACGAGTATCTGGTTCTGCGAGTAGCCGTGCGT
GGAGACCAGCTCCGAGGAGTGCTTGGACCAGGCCAGATTGCAAACCTGCG
AGCCCGTGTCCACGCACTGCATGGGCTGGCCCGTCAGCGTATTCCAGAAA
CGGATACACCTATCCGCCGTTCCACCGCCGCTGGCCAGGAGTCCGTGGTG
ATGCGGCGACCACGCGATCGCCTTTACAGCCGCCATATGCTCCGTGTATG
ATTGTACGGGATTCACGGAATGCTGATTCCACACATACAACCGATTATCG
TTGCCGCCACTGGCCAAGTATTGATTATCCGGTGACCATTTCAGTCCGCA
CACCTCCTGCCGATGTCCGGCCAATCTGCGCTCCGATTGCAGTTGCGGCG
TTCTCGTATCCCGCTGTATGATCCAACGGTCTCGCGACCCGCTCGACAGG
ATGTCACTGTTCCATGCCAAGGCGCCCACACGCGCCGAATGGCCATTCAG
TTTGTTGATCTGCTTATTGGCCGCCACATCCCAGACGGTCACGTAGCCGT
GATGTGTGCCCACGGCCACGGTGTTGCCACGCTCGTTCCACGACACCGAG
GTCACCGTATTCGCATCCGG
BS15605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3000-PA | 1437 | rap-RA | 634..1425 | 820..29 | 3935 | 99.8 | Minus |
CG3000-PB | 1437 | rap-RB | 634..1425 | 820..29 | 3935 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rap-RA | 2610 | CG3000-RA | 1104..1907 | 820..17 | 3960 | 99.5 | Minus |
rap-RB | 2516 | CG3000-RB | 1010..1813 | 820..17 | 3960 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4667993..4668796 | 17..820 | 3960 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-05 23:57:24 has no hits.
BS15605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:29 Download gff for
BS15605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-PA | 634..1437 | 17..820 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:44 Download gff for
BS15605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3000-PB | 634..1437 | 17..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:33:41 Download gff for
BS15605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-RB | 1008..1811 | 17..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:34:13 Download gff for
BS15605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-RB | 1010..1813 | 17..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:34:13 Download gff for
BS15605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4667993..4668796 | 17..820 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:33:41 Download gff for
BS15605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4562026..4562829 | 17..820 | 99 | | Plus |
BS15605.5prime Sequence
865 bp (706 high quality bases) assembled on 2006-12-21
> BS15605.5prime
GAAGTTATCCGTTGACATGTTTAGTCCCGAGTACGAGAAGCGCATCCTGA
AGCACTACAGTCCTGTGGCACGGAATCTGTTCAACAACTTCGAGTCGTCC
ACTACGCCCACATCTCTCGACCGCTTCATACCCTGCAGAGCGTACAACAA
CTGGCAGACGAACTTTGCGTCAATCAACAAGTCCAATGACAACTCGCCGC
AGACGAGTAAGAAGCAGCGGGACTGCGGGGAAACGGCACGCGATAGTCTC
GCCTACTCCTGCCTACTGAAGAACGAGCTCCTCGGATCGGCAATCGACGA
CGTGAAGACCGCCGGCGAGGAGCGGAATGAGAATGCCTACACGCCGGCCG
CAAAGCGGAGTCTCTTCAAGTACCAGTCACCCACCAAGCAGGACTACAAT
GGCGAGTGTCCGTACTCGTTGTCACCCGTCAGCGCCAAAAGTCAGAAGCT
GTTGCGATCGCCGCGCAAGGCTACGCGCAAAATCTCTCGCATTCCCTTCA
AGGTGCTAGACGCGCCCGAGTTGCAGGACGACTTCTATCTGAACCTGGTC
GACTGGTCGTCGCAGAACGTACTGGCTGTAGGCCTGGGCAGCTGTGTCTA
TCTGTGGAGCGCGTGCACCAGTCAGGTTACCCGCCTGTGTGATCTCAGTC
CGGATGCGAATACGGTGACCTCGGTGTCGTGGAACGAGCGTGGCAACACC
GTGGCCGTGGGCACACATCACGGCTACGTGACCGTCTGGGATGTGGCGGC
CAATAAGCAGATCAACAAACTGAATGGCCATTCGGCGCGTGTGGGCGCCT
TGGCATGGAACAGTGACATCCTGTCGAGCGGGTCGCGAGACCGTTGGATC
ATACAGCGGGATACG
BS15605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3000-PA | 1437 | rap-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
CG3000-PB | 1437 | rap-RB | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rap-RA | 2610 | CG3000-RA | 471..1319 | 17..865 | 4245 | 100 | Plus |
rap-RB | 2516 | CG3000-RB | 377..1225 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4674366..4674624 | 392..134 | 1295 | 100 | Minus |
X | 23542271 | X | 4668581..4668822 | 865..624 | 1210 | 100 | Minus |
X | 23542271 | X | 4668902..4669141 | 627..388 | 1200 | 100 | Minus |
X | 23542271 | X | 4676254..4676375 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 21:23:28 has no hits.
BS15605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:30 Download gff for
BS15605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:46 Download gff for
BS15605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3000-PB | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:19:48 Download gff for
BS15605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-RB | 370..1223 | 12..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:21:41 Download gff for
BS15605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-RB | 372..1225 | 12..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:21:41 Download gff for
BS15605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4668581..4668820 | 626..865 | 100 | <- | Minus |
X | 4668904..4669137 | 392..625 | 100 | <- | Minus |
X | 4674367..4674619 | 139..391 | 100 | <- | Minus |
X | 4676254..4676380 | 12..138 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:19:48 Download gff for
BS15605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4562614..4562853 | 626..865 | 100 | <- | Minus |
arm_X | 4562937..4563170 | 392..625 | 100 | <- | Minus |
arm_X | 4568400..4568652 | 139..391 | 100 | <- | Minus |
arm_X | 4570287..4570413 | 12..138 | 98 | | Minus |
BS15605.complete Sequence
1469 bp assembled on 2010-01-09
GenBank Submission: KX802445
> BS15605.complete
GAAGTTATCAGTCGACATGTTTAGTCCCGAGTACGAGAAGCGCATCCTGA
AGCACTACAGTCCTGTGGCACGGAATCTGTTCAACAACTTCGAGTCGTCC
ACTACGCCCACATCTCTCGACCGCTTCATACCCTGCAGAGCGTACAACAA
CTGGCAGACGAACTTTGCGTCAATCAACAAGTCCAATGACAACTCGCCGC
AGACGAGTAAGAAGCAGCGGGACTGCGGGGAAACGGCACGCGATAGTCTC
GCCTACTCCTGCCTACTGAAGAACGAGCTCCTCGGATCGGCAATCGACGA
CGTGAAGACCGCCGGCGAGGAGCGGAATGAGAATGCCTACACGCCGGCCG
CAAAGCGGAGTCTCTTCAAGTACCAGTCACCCACCAAGCAGGACTACAAT
GGCGAGTGTCCGTACTCGTTGTCACCCGTCAGCGCCAAAAGTCAGAAGCT
GTTGCGATCGCCGCGCAAGGCTACGCGCAAAATCTCTCGCATTCCCTTCA
AGGTGCTAGACGCGCCCGAGTTGCAGGACGACTTCTATCTGAACCTGGTC
GACTGGTCGTCGCAGAACGTACTGGCTGTAGGCCTGGGCAGCTGTGTCTA
TCTGTGGAGCGCGTGCACCAGTCAGGTTACCCGCCTGTGTGATCTCAGTC
CGGATGCGAATACGGTGACCTCGGTGTCGTGGAACGAGCGTGGCAACACC
GTGGCCGTGGGCACACATCACGGCTACGTGACCGTCTGGGATGTGGCGGC
CAATAAGCAGATCAACAAACTGAATGGCCATTCGGCGCGTGTGGGCGCCT
TGGCATGGAACAGTGACATCCTGTCGAGCGGGTCGCGAGACCGTTGGATC
ATACAGCGGGATACGAGAACGCCGCAACTGCAATCGGAGCGCAGATTGGC
CGGACATCGGCAGGAGGTGTGCGGACTGAAATGGTCACCGGATAATCAAT
ACTTGGCCAGTGGCGGCAACGATAATCGGTTGTATGTGTGGAATCAGCAT
TCCGTGAATCCCGTACAATCATACACGGAGCATATGGCGGCTGTAAAGGC
GATCGCGTGGTCGCCGCATCACCACGGACTCCTGGCCAGCGGCGGTGGAA
CGGCGGATAGGTGTATCCGTTTCTGGAATACGCTGACGGGCCAGCCCATG
CAGTGCGTGGACACGGGCTCGCAGGTTTGCAATCTGGCCTGGTCCAAGCA
CTCCTCGGAGCTGGTCTCCACGCACGGCTACTCGCAGAACCAGATACTCG
TGTGGAAATATCCCTCCCTGACGCAAGTGGCCAAGCTGACGGGCCATTCG
TATCGTGTGCTCTATCTGGCGCTGAGTCCCGATGGTGAGGCTATTGTTAC
GGGCGCCGGCGACGAGACGCTGCGATTTTGGAACGTATTCAGCAAGGCGC
GCAGTCAGAAGGAGAACAAGTCCGTTCTGAATCTGTTTGCCAATATCAGA
TAAAAGCTTTCTAGACCAT
BS15605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rap-RA | 1437 | CG3000-PA | 1..1437 | 17..1453 | 7185 | 100 | Plus |
rap-RB | 1437 | CG3000-PB | 1..1437 | 17..1453 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rap-RA | 2610 | CG3000-RA | 471..1907 | 17..1453 | 7185 | 100 | Plus |
rap-RB | 2516 | CG3000-RB | 377..1813 | 17..1453 | 7185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4667993..4668822 | 1453..624 | 4150 | 100 | Minus |
X | 23542271 | X | 4674366..4674624 | 392..134 | 1295 | 100 | Minus |
X | 23542271 | X | 4668902..4669141 | 627..388 | 1200 | 100 | Minus |
X | 23542271 | X | 4676254..4676375 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:16:13 has no hits.
BS15605.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:48 Download gff for
BS15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-RB | 381..1809 | 23..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:44 Download gff for
BS15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-RB | 381..1809 | 23..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:11 Download gff for
BS15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-RB | 381..1809 | 23..1451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:12 Download gff for
BS15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rap-RB | 383..1811 | 23..1451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:12 Download gff for
BS15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4676254..4676369 | 23..138 | 100 | | Minus |
X | 4667995..4668820 | 626..1451 | 100 | <- | Minus |
X | 4668904..4669137 | 392..625 | 100 | <- | Minus |
X | 4674367..4674619 | 139..391 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:44 Download gff for
BS15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4562028..4562853 | 626..1451 | 100 | <- | Minus |
arm_X | 4562937..4563170 | 392..625 | 100 | <- | Minus |
arm_X | 4568400..4568652 | 139..391 | 100 | <- | Minus |
arm_X | 4570287..4570402 | 23..138 | 100 | | Minus |
BS15605.pep Sequence
Translation from 16 to 1452
> BS15605.pep
MFSPEYEKRILKHYSPVARNLFNNFESSTTPTSLDRFIPCRAYNNWQTNF
ASINKSNDNSPQTSKKQRDCGETARDSLAYSCLLKNELLGSAIDDVKTAG
EERNENAYTPAAKRSLFKYQSPTKQDYNGECPYSLSPVSAKSQKLLRSPR
KATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLAVGLGSCVYLWSAC
TSQVTRLCDLSPDANTVTSVSWNERGNTVAVGTHHGYVTVWDVAANKQIN
KLNGHSARVGALAWNSDILSSGSRDRWIIQRDTRTPQLQSERRLAGHRQE
VCGLKWSPDNQYLASGGNDNRLYVWNQHSVNPVQSYTEHMAAVKAIAWSP
HHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELV
STHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLALSPDGEAIVTGAGDE
TLRFWNVFSKARSQKENKSVLNLFANIR*
BS15605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rap-PA | 478 | CG3000-PA | 1..478 | 1..478 | 2551 | 100 | Plus |
rap-PB | 478 | CG3000-PB | 1..478 | 1..478 | 2551 | 100 | Plus |
fzr2-PA | 451 | CG16783-PA | 1..451 | 1..478 | 1184 | 49.2 | Plus |
fzy-PA | 526 | CG4274-PA | 75..501 | 23..459 | 874 | 41.3 | Plus |
ebi-PA | 700 | CG4063-PA | 408..655 | 212..456 | 204 | 26.4 | Plus |