Clone BS15605 Report

Search the DGRC for BS15605

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptrap-RA
Protein status:BS15605.pep: full length peptide match
Sequenced Size:1469

Clone Sequence Records

BS15605.3prime Sequence

820 bp (745 high quality bases) assembled on 2006-12-21

> BS15605.3prime
ATGGNCTAGAAAGCTTTTACCTTATATGGGCAAACAGATTCAGAACGGAC
TTGTTCTCCTTCTGACTGCGCGCCTTGCTGAATACGTTCCAAAATCTCAG
CGTCTCGTCGCCGGCGCCCGTAACAATAGCCTCACCATCGGGACTCAGCG
CCAGATAGAGCACACGATACGAATGGCCCGTCAGCTTGGCCACTTGCGTC
AGGGAGGGATATTTCCACACGAGTATCTGGTTCTGCGAGTAGCCGTGCGT
GGAGACCAGCTCCGAGGAGTGCTTGGACCAGGCCAGATTGCAAACCTGCG
AGCCCGTGTCCACGCACTGCATGGGCTGGCCCGTCAGCGTATTCCAGAAA
CGGATACACCTATCCGCCGTTCCACCGCCGCTGGCCAGGAGTCCGTGGTG
ATGCGGCGACCACGCGATCGCCTTTACAGCCGCCATATGCTCCGTGTATG
ATTGTACGGGATTCACGGAATGCTGATTCCACACATACAACCGATTATCG
TTGCCGCCACTGGCCAAGTATTGATTATCCGGTGACCATTTCAGTCCGCA
CACCTCCTGCCGATGTCCGGCCAATCTGCGCTCCGATTGCAGTTGCGGCG
TTCTCGTATCCCGCTGTATGATCCAACGGTCTCGCGACCCGCTCGACAGG
ATGTCACTGTTCCATGCCAAGGCGCCCACACGCGCCGAATGGCCATTCAG
TTTGTTGATCTGCTTATTGGCCGCCACATCCCAGACGGTCACGTAGCCGT
GATGTGTGCCCACGGCCACGGTGTTGCCACGCTCGTTCCACGACACCGAG
GTCACCGTATTCGCATCCGG

BS15605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3000-PA 1437 rap-RA 634..1425 820..29 3935 99.8 Minus
CG3000-PB 1437 rap-RB 634..1425 820..29 3935 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
rap-RA 2610 CG3000-RA 1104..1907 820..17 3960 99.5 Minus
rap-RB 2516 CG3000-RB 1010..1813 820..17 3960 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4667993..4668796 17..820 3960 99.5 Plus
Blast to na_te.dros performed on 2015-02-05 23:57:24 has no hits.

BS15605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:29 Download gff for BS15605.3prime
Subject Subject Range Query Range Percent Splice Strand
rap-PA 634..1437 17..820 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:44 Download gff for BS15605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3000-PB 634..1437 17..820 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:33:41 Download gff for BS15605.3prime
Subject Subject Range Query Range Percent Splice Strand
rap-RB 1008..1811 17..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:34:13 Download gff for BS15605.3prime
Subject Subject Range Query Range Percent Splice Strand
rap-RB 1010..1813 17..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:34:13 Download gff for BS15605.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4667993..4668796 17..820 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:33:41 Download gff for BS15605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4562026..4562829 17..820 99   Plus

BS15605.5prime Sequence

865 bp (706 high quality bases) assembled on 2006-12-21

> BS15605.5prime
GAAGTTATCCGTTGACATGTTTAGTCCCGAGTACGAGAAGCGCATCCTGA
AGCACTACAGTCCTGTGGCACGGAATCTGTTCAACAACTTCGAGTCGTCC
ACTACGCCCACATCTCTCGACCGCTTCATACCCTGCAGAGCGTACAACAA
CTGGCAGACGAACTTTGCGTCAATCAACAAGTCCAATGACAACTCGCCGC
AGACGAGTAAGAAGCAGCGGGACTGCGGGGAAACGGCACGCGATAGTCTC
GCCTACTCCTGCCTACTGAAGAACGAGCTCCTCGGATCGGCAATCGACGA
CGTGAAGACCGCCGGCGAGGAGCGGAATGAGAATGCCTACACGCCGGCCG
CAAAGCGGAGTCTCTTCAAGTACCAGTCACCCACCAAGCAGGACTACAAT
GGCGAGTGTCCGTACTCGTTGTCACCCGTCAGCGCCAAAAGTCAGAAGCT
GTTGCGATCGCCGCGCAAGGCTACGCGCAAAATCTCTCGCATTCCCTTCA
AGGTGCTAGACGCGCCCGAGTTGCAGGACGACTTCTATCTGAACCTGGTC
GACTGGTCGTCGCAGAACGTACTGGCTGTAGGCCTGGGCAGCTGTGTCTA
TCTGTGGAGCGCGTGCACCAGTCAGGTTACCCGCCTGTGTGATCTCAGTC
CGGATGCGAATACGGTGACCTCGGTGTCGTGGAACGAGCGTGGCAACACC
GTGGCCGTGGGCACACATCACGGCTACGTGACCGTCTGGGATGTGGCGGC
CAATAAGCAGATCAACAAACTGAATGGCCATTCGGCGCGTGTGGGCGCCT
TGGCATGGAACAGTGACATCCTGTCGAGCGGGTCGCGAGACCGTTGGATC
ATACAGCGGGATACG

BS15605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3000-PA 1437 rap-RA 1..849 17..865 4245 100 Plus
CG3000-PB 1437 rap-RB 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 21:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
rap-RA 2610 CG3000-RA 471..1319 17..865 4245 100 Plus
rap-RB 2516 CG3000-RB 377..1225 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 21:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4674366..4674624 392..134 1295 100 Minus
X 23542271 X 4668581..4668822 865..624 1210 100 Minus
X 23542271 X 4668902..4669141 627..388 1200 100 Minus
X 23542271 X 4676254..4676375 138..17 610 100 Minus
Blast to na_te.dros performed on 2015-02-05 21:23:28 has no hits.

BS15605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:30 Download gff for BS15605.5prime
Subject Subject Range Query Range Percent Splice Strand
rap-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:46 Download gff for BS15605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3000-PB 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:19:48 Download gff for BS15605.5prime
Subject Subject Range Query Range Percent Splice Strand
rap-RB 370..1223 12..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:21:41 Download gff for BS15605.5prime
Subject Subject Range Query Range Percent Splice Strand
rap-RB 372..1225 12..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:21:41 Download gff for BS15605.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4668581..4668820 626..865 100 <- Minus
X 4668904..4669137 392..625 100 <- Minus
X 4674367..4674619 139..391 100 <- Minus
X 4676254..4676380 12..138 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:19:48 Download gff for BS15605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4562614..4562853 626..865 100 <- Minus
arm_X 4562937..4563170 392..625 100 <- Minus
arm_X 4568400..4568652 139..391 100 <- Minus
arm_X 4570287..4570413 12..138 98   Minus

BS15605.complete Sequence

1469 bp assembled on 2010-01-09

GenBank Submission: KX802445

> BS15605.complete
GAAGTTATCAGTCGACATGTTTAGTCCCGAGTACGAGAAGCGCATCCTGA
AGCACTACAGTCCTGTGGCACGGAATCTGTTCAACAACTTCGAGTCGTCC
ACTACGCCCACATCTCTCGACCGCTTCATACCCTGCAGAGCGTACAACAA
CTGGCAGACGAACTTTGCGTCAATCAACAAGTCCAATGACAACTCGCCGC
AGACGAGTAAGAAGCAGCGGGACTGCGGGGAAACGGCACGCGATAGTCTC
GCCTACTCCTGCCTACTGAAGAACGAGCTCCTCGGATCGGCAATCGACGA
CGTGAAGACCGCCGGCGAGGAGCGGAATGAGAATGCCTACACGCCGGCCG
CAAAGCGGAGTCTCTTCAAGTACCAGTCACCCACCAAGCAGGACTACAAT
GGCGAGTGTCCGTACTCGTTGTCACCCGTCAGCGCCAAAAGTCAGAAGCT
GTTGCGATCGCCGCGCAAGGCTACGCGCAAAATCTCTCGCATTCCCTTCA
AGGTGCTAGACGCGCCCGAGTTGCAGGACGACTTCTATCTGAACCTGGTC
GACTGGTCGTCGCAGAACGTACTGGCTGTAGGCCTGGGCAGCTGTGTCTA
TCTGTGGAGCGCGTGCACCAGTCAGGTTACCCGCCTGTGTGATCTCAGTC
CGGATGCGAATACGGTGACCTCGGTGTCGTGGAACGAGCGTGGCAACACC
GTGGCCGTGGGCACACATCACGGCTACGTGACCGTCTGGGATGTGGCGGC
CAATAAGCAGATCAACAAACTGAATGGCCATTCGGCGCGTGTGGGCGCCT
TGGCATGGAACAGTGACATCCTGTCGAGCGGGTCGCGAGACCGTTGGATC
ATACAGCGGGATACGAGAACGCCGCAACTGCAATCGGAGCGCAGATTGGC
CGGACATCGGCAGGAGGTGTGCGGACTGAAATGGTCACCGGATAATCAAT
ACTTGGCCAGTGGCGGCAACGATAATCGGTTGTATGTGTGGAATCAGCAT
TCCGTGAATCCCGTACAATCATACACGGAGCATATGGCGGCTGTAAAGGC
GATCGCGTGGTCGCCGCATCACCACGGACTCCTGGCCAGCGGCGGTGGAA
CGGCGGATAGGTGTATCCGTTTCTGGAATACGCTGACGGGCCAGCCCATG
CAGTGCGTGGACACGGGCTCGCAGGTTTGCAATCTGGCCTGGTCCAAGCA
CTCCTCGGAGCTGGTCTCCACGCACGGCTACTCGCAGAACCAGATACTCG
TGTGGAAATATCCCTCCCTGACGCAAGTGGCCAAGCTGACGGGCCATTCG
TATCGTGTGCTCTATCTGGCGCTGAGTCCCGATGGTGAGGCTATTGTTAC
GGGCGCCGGCGACGAGACGCTGCGATTTTGGAACGTATTCAGCAAGGCGC
GCAGTCAGAAGGAGAACAAGTCCGTTCTGAATCTGTTTGCCAATATCAGA
TAAAAGCTTTCTAGACCAT

BS15605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
rap-RA 1437 CG3000-PA 1..1437 17..1453 7185 100 Plus
rap-RB 1437 CG3000-PB 1..1437 17..1453 7185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
rap-RA 2610 CG3000-RA 471..1907 17..1453 7185 100 Plus
rap-RB 2516 CG3000-RB 377..1813 17..1453 7185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4667993..4668822 1453..624 4150 100 Minus
X 23542271 X 4674366..4674624 392..134 1295 100 Minus
X 23542271 X 4668902..4669141 627..388 1200 100 Minus
X 23542271 X 4676254..4676375 138..17 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:16:13 has no hits.

BS15605.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:48 Download gff for BS15605.complete
Subject Subject Range Query Range Percent Splice Strand
rap-RB 381..1809 23..1451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:44 Download gff for BS15605.complete
Subject Subject Range Query Range Percent Splice Strand
rap-RB 381..1809 23..1451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:11 Download gff for BS15605.complete
Subject Subject Range Query Range Percent Splice Strand
rap-RB 381..1809 23..1451 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:12 Download gff for BS15605.complete
Subject Subject Range Query Range Percent Splice Strand
rap-RB 383..1811 23..1451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:12 Download gff for BS15605.complete
Subject Subject Range Query Range Percent Splice Strand
X 4676254..4676369 23..138 100   Minus
X 4667995..4668820 626..1451 100 <- Minus
X 4668904..4669137 392..625 100 <- Minus
X 4674367..4674619 139..391 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:44 Download gff for BS15605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4562028..4562853 626..1451 100 <- Minus
arm_X 4562937..4563170 392..625 100 <- Minus
arm_X 4568400..4568652 139..391 100 <- Minus
arm_X 4570287..4570402 23..138 100   Minus

BS15605.pep Sequence

Translation from 16 to 1452

> BS15605.pep
MFSPEYEKRILKHYSPVARNLFNNFESSTTPTSLDRFIPCRAYNNWQTNF
ASINKSNDNSPQTSKKQRDCGETARDSLAYSCLLKNELLGSAIDDVKTAG
EERNENAYTPAAKRSLFKYQSPTKQDYNGECPYSLSPVSAKSQKLLRSPR
KATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLAVGLGSCVYLWSAC
TSQVTRLCDLSPDANTVTSVSWNERGNTVAVGTHHGYVTVWDVAANKQIN
KLNGHSARVGALAWNSDILSSGSRDRWIIQRDTRTPQLQSERRLAGHRQE
VCGLKWSPDNQYLASGGNDNRLYVWNQHSVNPVQSYTEHMAAVKAIAWSP
HHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELV
STHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLALSPDGEAIVTGAGDE
TLRFWNVFSKARSQKENKSVLNLFANIR*

BS15605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
rap-PA 478 CG3000-PA 1..478 1..478 2551 100 Plus
rap-PB 478 CG3000-PB 1..478 1..478 2551 100 Plus
fzr2-PA 451 CG16783-PA 1..451 1..478 1184 49.2 Plus
fzy-PA 526 CG4274-PA 75..501 23..459 874 41.3 Plus
ebi-PA 700 CG4063-PA 408..655 212..456 204 26.4 Plus