Clone Sequence Records
BS15606.complete Sequence
560 bp assembled on 2010-02-09
GenBank Submission: KX806243
> BS15606.complete
GAAGTTATCAGTCGACATGAGCTACTTGCGATCGATAGAAATCTCACGCG
TCGAAATGTCGCCGGCTGACGATAATTCCTTTGCCACAACTCATGGAAAC
AAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTGGAACTGTGCCT
GCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCACCAATTCTCATC
TGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCTATGTGACCTTT
GGAGCACTGACCATCTACACGGCAATCTATCTGATAATGGCGCTCTTCGG
TGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCTAGTGGCCTTTG
TGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATTGGTCCACCACC
AAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTGGATCTCGTGAT
GGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTTCTTGCTGGACA
TACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAGAATGAAAGCTT
TCTAGACCAT
BS15606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 528 | CG9628-PC | 1..528 | 17..544 | 2640 | 100 | Plus |
CG9628-RB | 528 | CG9628-PB | 1..528 | 17..544 | 2640 | 100 | Plus |
CG9628-RA | 489 | CG9628-PA | 1..489 | 56..544 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 173..700 | 17..544 | 2640 | 100 | Plus |
CG9628-RB | 1053 | CG9628-RB | 145..672 | 17..544 | 2640 | 100 | Plus |
CG9628-RA | 1125 | CG9628-RA | 239..744 | 39..544 | 2530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627793 | 307..544 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 14627334..14627496 | 145..307 | 815 | 100 | Plus |
3L | 28110227 | 3L | 14627018..14627126 | 37..145 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1981..2031 | 30..79 | 126 | 74.5 | Plus |
BS15606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:19 Download gff for
BS15606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:17 Download gff for
BS15606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 133..659 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:36 Download gff for
BS15606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 145..671 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:16 Download gff for
BS15606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 133..659 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:49 Download gff for
BS15606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 145..671 | 17..543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:49 Download gff for
BS15606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627020..14627126 | 39..145 | 100 | -> | Plus |
3L | 14627335..14627495 | 146..306 | 100 | -> | Plus |
3L | 14627556..14627792 | 307..543 | 100 | | Plus |
3L | 14626873..14626894 | 17..38 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:36 Download gff for
BS15606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14619973..14619994 | 17..38 | 100 | -> | Plus |
arm_3L | 14620120..14620226 | 39..145 | 100 | -> | Plus |
arm_3L | 14620435..14620595 | 146..306 | 100 | -> | Plus |
arm_3L | 14620656..14620892 | 307..543 | 100 | | Plus |
BS15606.3prime Sequence
583 bp (583 high quality bases) assembled on 2006-12-21
> BS15606.3prime
TCCCTTTAGAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCCTTCTAG
ATCGCCGTGGACACCTAAACGCAGGGTGATGAGTATGTCCAGCAAGAAGA
CCAGCGAGGTAACCAAGGCATTCGAGGCGGAAGCCATCACGAGATCCAAA
CGATGCATATTCGGGTGCCAGTAGTTGCGATCCTTGGTGGTGGACCAATC
CCGGAAAAGCAGGGCGGTTACGGCCACGAAGAGCACAAAGGCCACTAGAT
TCCACAAAGTAGCCGTACGCCATGGAGTCAAATCACCGAAGAGCGCCATT
ATCAGATAGATTGCCGTGTAGATGGTCAGTGCTCCAAAGGTCACATAGCA
AAGGGAAGCCACTCGGGGAGTGATGAACACCCGCAGATGAGAATTGGTGG
CCGGCTCGTCGATCAGACCCAAACAGCATATAAGCAGGCACAGTTCCACA
ATCTTGATGCATATCACCGTGTAGGTGGCCTTTTTGTTTCCATGAGTTGT
GGCAAAGGAATTATCGTCAGCCGGCGACATTTCGACGCGTGAGATTTCTA
TCGATCGCAAGTAGCTCATGTCGACTGATAACT
BS15606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PB | 528 | CG9628-RB | 1..525 | 569..45 | 2575 | 99.6 | Minus |
CG9628-PA | 489 | CG9628-RA | 1..486 | 530..45 | 2380 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 173..697 | 569..45 | 2595 | 99.6 | Minus |
CG9628-RB | 1053 | CG9628-RB | 145..669 | 569..45 | 2595 | 99.6 | Minus |
CG9628-RA | 1125 | CG9628-RA | 239..741 | 547..45 | 2485 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627790 | 279..45 | 1145 | 99.1 | Minus |
3L | 28110227 | 3L | 14627334..14627496 | 441..279 | 815 | 100 | Minus |
3L | 28110227 | 3L | 14627018..14627126 | 549..441 | 545 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 07:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1981..2031 | 556..507 | 126 | 74.5 | Minus |
BS15606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:33 Download gff for
BS15606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 1..528 | 42..569 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:47 Download gff for
BS15606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 1..528 | 42..569 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:23:38 Download gff for
BS15606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 137..672 | 42..578 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:40 Download gff for
BS15606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 137..672 | 42..578 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:40 Download gff for
BS15606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627020..14627126 | 441..547 | 100 | -> | Minus |
3L | 14627335..14627495 | 280..440 | 100 | -> | Minus |
3L | 14627556..14627793 | 42..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:23:38 Download gff for
BS15606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620120..14620226 | 441..547 | 100 | -> | Minus |
arm_3L | 14620435..14620595 | 280..440 | 100 | -> | Minus |
arm_3L | 14620656..14620893 | 42..279 | 98 | | Minus |
BS15606.5prime Sequence
558 bp (558 high quality bases) assembled on 2006-12-21
> BS15606.5prime
GAAGTTATCCGTCGACATGAGCTACTTGCGATCGATAGAAATCTCACGCG
TCGAAATGTCGCCGGCTGACGATAATTCCTTTGCCACAACTCATGGAAAC
AAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTGGAACTGTGCCT
GCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCACCAATTCTCATC
TGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCTATGTGACCTTT
GGAGCACTGACCATCTACACGGCAATCTATCTGATAATGGCGCTCTTCGG
TGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCTAGTGGCCTTTG
TGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATTGGTCCACCACC
AAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTGGATCTCGTGAT
GGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTTCTTGCTGGACA
TACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAGAATGAAAGCTT
TCTAGACC
BS15606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PB | 528 | CG9628-RB | 1..528 | 17..544 | 2640 | 100 | Plus |
CG9628-PA | 489 | CG9628-RA | 1..489 | 56..544 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 173..700 | 17..544 | 2640 | 100 | Plus |
CG9628-RB | 1053 | CG9628-RB | 145..672 | 17..544 | 2640 | 100 | Plus |
CG9628-RA | 1125 | CG9628-RA | 239..744 | 39..544 | 2530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627793 | 307..544 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 14627334..14627496 | 145..307 | 815 | 100 | Plus |
3L | 28110227 | 3L | 14627018..14627126 | 37..145 | 545 | 100 | Plus |
Blast to na_te.dros performed 2015-02-05 23:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1981..2031 | 30..79 | 126 | 74.5 | Plus |
BS15606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:34 Download gff for
BS15606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:49 Download gff for
BS15606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:33:31 Download gff for
BS15606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 137..672 | 8..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:34:06 Download gff for
BS15606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 137..672 | 8..544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:34:06 Download gff for
BS15606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627020..14627126 | 39..145 | 100 | -> | Plus |
3L | 14627335..14627495 | 146..306 | 100 | -> | Plus |
3L | 14627556..14627793 | 307..544 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:33:31 Download gff for
BS15606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620120..14620226 | 39..145 | 100 | -> | Plus |
arm_3L | 14620435..14620595 | 146..306 | 100 | -> | Plus |
arm_3L | 14620656..14620893 | 307..544 | 100 | | Plus |
BS15606.pep Sequence
Translation from 16 to 543
> BS15606.pep
MSYLRSIEISRVEMSPADDNSFATTHGNKKATYTVICIKIVELCLLICCL
GLIDEPATNSHLRVFITPRVASLCYVTFGALTIYTAIYLIMALFGDLTPW
RTATLWNLVAFVLFVAVTALLFRDWSTTKDRNYWHPNMHRLDLVMASASI
ALVTSLVFLLDILITLRLGVHGDLE*
BS15606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PC | 175 | CG9628-PC | 1..175 | 1..175 | 904 | 100 | Plus |
CG9628-PB | 175 | CG9628-PB | 1..175 | 1..175 | 904 | 100 | Plus |
CG9628-PA | 162 | CG9628-PA | 1..162 | 14..175 | 844 | 100 | Plus |