Clone BS15606 Report

Search the DGRC for BS15606

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG9628-RB
Protein status:BS15606.pep: full length peptide match
Sequenced Size:560

Clone Sequence Records

BS15606.complete Sequence

560 bp assembled on 2010-02-09

GenBank Submission: KX806243

> BS15606.complete
GAAGTTATCAGTCGACATGAGCTACTTGCGATCGATAGAAATCTCACGCG
TCGAAATGTCGCCGGCTGACGATAATTCCTTTGCCACAACTCATGGAAAC
AAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTGGAACTGTGCCT
GCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCACCAATTCTCATC
TGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCTATGTGACCTTT
GGAGCACTGACCATCTACACGGCAATCTATCTGATAATGGCGCTCTTCGG
TGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCTAGTGGCCTTTG
TGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATTGGTCCACCACC
AAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTGGATCTCGTGAT
GGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTTCTTGCTGGACA
TACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAGAATGAAAGCTT
TCTAGACCAT

BS15606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 528 CG9628-PC 1..528 17..544 2640 100 Plus
CG9628-RB 528 CG9628-PB 1..528 17..544 2640 100 Plus
CG9628-RA 489 CG9628-PA 1..489 56..544 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 173..700 17..544 2640 100 Plus
CG9628-RB 1053 CG9628-RB 145..672 17..544 2640 100 Plus
CG9628-RA 1125 CG9628-RA 239..744 39..544 2530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627793 307..544 1190 100 Plus
3L 28110227 3L 14627334..14627496 145..307 815 100 Plus
3L 28110227 3L 14627018..14627126 37..145 545 100 Plus
Blast to na_te.dros performed 2014-11-27 10:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 1981..2031 30..79 126 74.5 Plus

BS15606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:19 Download gff for BS15606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:17 Download gff for BS15606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 133..659 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:36 Download gff for BS15606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 145..671 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:16 Download gff for BS15606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 133..659 17..543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:49 Download gff for BS15606.complete
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 145..671 17..543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:49 Download gff for BS15606.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14627020..14627126 39..145 100 -> Plus
3L 14627335..14627495 146..306 100 -> Plus
3L 14627556..14627792 307..543 100   Plus
3L 14626873..14626894 17..38 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:36 Download gff for BS15606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14619973..14619994 17..38 100 -> Plus
arm_3L 14620120..14620226 39..145 100 -> Plus
arm_3L 14620435..14620595 146..306 100 -> Plus
arm_3L 14620656..14620892 307..543 100   Plus

BS15606.3prime Sequence

583 bp (583 high quality bases) assembled on 2006-12-21

> BS15606.3prime
TCCCTTTAGAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTTCCTTCTAG
ATCGCCGTGGACACCTAAACGCAGGGTGATGAGTATGTCCAGCAAGAAGA
CCAGCGAGGTAACCAAGGCATTCGAGGCGGAAGCCATCACGAGATCCAAA
CGATGCATATTCGGGTGCCAGTAGTTGCGATCCTTGGTGGTGGACCAATC
CCGGAAAAGCAGGGCGGTTACGGCCACGAAGAGCACAAAGGCCACTAGAT
TCCACAAAGTAGCCGTACGCCATGGAGTCAAATCACCGAAGAGCGCCATT
ATCAGATAGATTGCCGTGTAGATGGTCAGTGCTCCAAAGGTCACATAGCA
AAGGGAAGCCACTCGGGGAGTGATGAACACCCGCAGATGAGAATTGGTGG
CCGGCTCGTCGATCAGACCCAAACAGCATATAAGCAGGCACAGTTCCACA
ATCTTGATGCATATCACCGTGTAGGTGGCCTTTTTGTTTCCATGAGTTGT
GGCAAAGGAATTATCGTCAGCCGGCGACATTTCGACGCGTGAGATTTCTA
TCGATCGCAAGTAGCTCATGTCGACTGATAACT

BS15606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PB 528 CG9628-RB 1..525 569..45 2575 99.6 Minus
CG9628-PA 489 CG9628-RA 1..486 530..45 2380 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 07:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 173..697 569..45 2595 99.6 Minus
CG9628-RB 1053 CG9628-RB 145..669 569..45 2595 99.6 Minus
CG9628-RA 1125 CG9628-RA 239..741 547..45 2485 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 07:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627790 279..45 1145 99.1 Minus
3L 28110227 3L 14627334..14627496 441..279 815 100 Minus
3L 28110227 3L 14627018..14627126 549..441 545 100 Minus
Blast to na_te.dros performed 2015-02-08 07:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 1981..2031 556..507 126 74.5 Minus

BS15606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:33 Download gff for BS15606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 1..528 42..569 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:47 Download gff for BS15606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 1..528 42..569 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:23:38 Download gff for BS15606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 137..672 42..578 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:21:40 Download gff for BS15606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 137..672 42..578 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 08:21:40 Download gff for BS15606.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14627020..14627126 441..547 100 -> Minus
3L 14627335..14627495 280..440 100 -> Minus
3L 14627556..14627793 42..279 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:23:38 Download gff for BS15606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620120..14620226 441..547 100 -> Minus
arm_3L 14620435..14620595 280..440 100 -> Minus
arm_3L 14620656..14620893 42..279 98   Minus

BS15606.5prime Sequence

558 bp (558 high quality bases) assembled on 2006-12-21

> BS15606.5prime
GAAGTTATCCGTCGACATGAGCTACTTGCGATCGATAGAAATCTCACGCG
TCGAAATGTCGCCGGCTGACGATAATTCCTTTGCCACAACTCATGGAAAC
AAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTGGAACTGTGCCT
GCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCACCAATTCTCATC
TGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCTATGTGACCTTT
GGAGCACTGACCATCTACACGGCAATCTATCTGATAATGGCGCTCTTCGG
TGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCTAGTGGCCTTTG
TGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATTGGTCCACCACC
AAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTGGATCTCGTGAT
GGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTTCTTGCTGGACA
TACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAGAATGAAAGCTT
TCTAGACC

BS15606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PB 528 CG9628-RB 1..528 17..544 2640 100 Plus
CG9628-PA 489 CG9628-RA 1..489 56..544 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-RC 890 CG9628-RC 173..700 17..544 2640 100 Plus
CG9628-RB 1053 CG9628-RB 145..672 17..544 2640 100 Plus
CG9628-RA 1125 CG9628-RA 239..744 39..544 2530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14627556..14627793 307..544 1190 100 Plus
3L 28110227 3L 14627334..14627496 145..307 815 100 Plus
3L 28110227 3L 14627018..14627126 37..145 545 100 Plus
Blast to na_te.dros performed 2015-02-05 23:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 1981..2031 30..79 126 74.5 Plus

BS15606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:34 Download gff for BS15606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 1..528 17..544 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:49 Download gff for BS15606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-PB 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:33:31 Download gff for BS15606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 137..672 8..544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:34:06 Download gff for BS15606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9628-RB 137..672 8..544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:34:06 Download gff for BS15606.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14627020..14627126 39..145 100 -> Plus
3L 14627335..14627495 146..306 100 -> Plus
3L 14627556..14627793 307..544 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:33:31 Download gff for BS15606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14620120..14620226 39..145 100 -> Plus
arm_3L 14620435..14620595 146..306 100 -> Plus
arm_3L 14620656..14620893 307..544 100   Plus

BS15606.pep Sequence

Translation from 16 to 543

> BS15606.pep
MSYLRSIEISRVEMSPADDNSFATTHGNKKATYTVICIKIVELCLLICCL
GLIDEPATNSHLRVFITPRVASLCYVTFGALTIYTAIYLIMALFGDLTPW
RTATLWNLVAFVLFVAVTALLFRDWSTTKDRNYWHPNMHRLDLVMASASI
ALVTSLVFLLDILITLRLGVHGDLE*

BS15606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9628-PC 175 CG9628-PC 1..175 1..175 904 100 Plus
CG9628-PB 175 CG9628-PB 1..175 1..175 904 100 Plus
CG9628-PA 162 CG9628-PA 1..162 14..175 844 100 Plus