Clone Sequence Records
BS15607.complete Sequence
1376 bp assembled on 2009-12-07
GenBank Submission: KX800482
> BS15607.complete
GAAGTTATCAGTCGACATGGCGCCCTTCAAGATCAAGTTCCGGATGGGCA
GCTCGCGCAGCACCTCGCAGGAGCACGACCCCGACCCGCAGGTGAACGAG
GCGCTCCTGGGCGCCCAGAGCCAGCAGCAGAACGGGCAGCCCCTCCAGGA
GGCGGTGGAGGCCAGCAGCAGCTCCAGCCTCGACCTCGCGGACTCCAGCA
GTCTCGGCCAGCTGAGCAGCGAGCGCAAGCTGCTCCTGCCGCCCACCACC
AGTAGCAGCACCATGCGATTGGGATATCTTAACCAGAACCGCACTCCGTG
CATCAACGAATCGTTGGCGGATACGGATGCAGACACAGTGCCCACCACCC
CACCGCCTTCCTACGAGCATGTTCTAGAGGAGAACACTCGGTTGTCCCAA
CACCAGCGACAGTTGTCCCTGGACAGCGCCACTCCGAACCAGAACAGCCG
GCGCAGCTCGGCGAACAGCTCACGGCACAGTGCCGCCCAGCTGAGTGCCG
CCTTGGAGCAGCTGGCCGGGAATGGAGGCGCCGGGGAGTACTGCAACGAC
CCGGACTGCAGGCAGAACTTGAACAACAACGGAGCCACCAGCCACAACGG
CAACCACATCCAGAACGCGAACAACAACAACGACGGCGAGCAGATCTTCG
AGGGCGTCACGGAACTGGAGCTGCGAAGCGACAACGAGGAGCAGCTTAGC
ATCAACGAGTTCCTGCTGGAGACAGAGATGGCGGCCTCACCGTCCCGCCG
TCTGGAGGATCGATACGCGGGTGGCGCAGGAGCGGACGAGGATCAGGGCG
GCCAGTGCCAGGACGATCAGTGCGCGCAGTGCAGCGAGGAGCGGGCCAGC
GGAGAGGACAGGGATGCGGCCAGCACCAGCAGTCAGGCGGCGGCATCGTC
CGGCGGTGGCAACAACTTTTACGATCCGCTCCTGAATCGGGGCAGCTACG
CAAACTACAGTGAAGGTGGCTCTGCGAGTTCGGGACCTGGTTCGGCCAAC
GGCCAAATGTGCCAGGAGGCCTGCTGCAGCGGATCCGCATCCGGATCGAC
TGCATCCAGGAGCGGGCGGAGTGGAAGGCGGCAGAACCAGCAGGGTCAGC
CGCCCAACTGCCACACCAGCCTGCTCACGCCGGAGATGATGAGCAACAAG
ACGAGCAAGGAGATCTACAAGGACCTGGCCAAGCAGTGGGGCATCACCTG
CAAGATGTCCGAGAGCTGTCGGTGCATGGAGTGTCAGAGTCACTACTTCG
ACTGCGACTACGATGATAACGAGCACCAGAAGACGGACGGAGGATTGGGC
GCTGGCACGCCCATGTTTATCAGCGAGGTGATGCACGGATCCGGGTGCAA
CATTTTGTAGAAGCTTTCTAGACCAT
BS15607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3257-RA | 1344 | CG3257-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3257-RA | 2911 | CG3257-RA | 306..1650 | 16..1360 | 6725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24120890..24121476 | 381..967 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 24121531..24121834 | 964..1267 | 1520 | 100 | Plus |
2R | 25286936 | 2R | 24119998..24120255 | 16..273 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 24120711..24120821 | 272..382 | 555 | 100 | Plus |
2R | 25286936 | 2R | 24121910..24122002 | 1268..1360 | 465 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2443 | 556..645 | 132 | 66.7 | Plus |
BS15607.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:18 Download gff for
BS15607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-RA | 310..1653 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:47 Download gff for
BS15607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-RA | 307..1650 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:14 Download gff for
BS15607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-RA | 310..1653 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:58 Download gff for
BS15607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-RA | 307..1650 | 17..1360 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:58 Download gff for
BS15607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24119999..24120254 | 17..272 | 100 | -> | Plus |
2R | 24120712..24120821 | 273..382 | 100 | -> | Plus |
2R | 24120892..24121474 | 383..965 | 100 | -> | Plus |
2R | 24121533..24121834 | 966..1267 | 100 | -> | Plus |
2R | 24121910..24122002 | 1268..1360 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:47 Download gff for
BS15607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20007522..20007777 | 17..272 | 100 | -> | Plus |
arm_2R | 20008235..20008344 | 273..382 | 100 | -> | Plus |
arm_2R | 20008415..20008997 | 383..965 | 100 | -> | Plus |
arm_2R | 20009056..20009357 | 966..1267 | 100 | -> | Plus |
arm_2R | 20009433..20009525 | 1268..1360 | 100 | | Plus |
BS15607.3prime Sequence
940 bp (750 high quality bases) assembled on 2006-12-21
> BS15607.3prime
TCCCTTAAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTACCTTTGA
GGCACCCGGATCCGTGCATCACCTCGCTGATAAACATGGGCGTGCCAGCG
CCCAATCCTCCGTCCGTCTTCTGGTGCTCGTTATCATCGTAGTCGCAGTC
GAAGTAGTGACTCTGACACTCCATGCACCGACAGCTCTCGGACATCTTGC
AGGTGATGCCCCACTGCTTGGCCAGGTCCTTGTAGATCTCCTTGCTCGTC
TTGTTGCTCATCATCTCCGGCGTGAGCAGGCTGGTGTGGCAGTTGGGCGG
CTGACCCTGCTGGTTCTGCCGCCTTCCACTCCGCCCGCTCCTGGATGCAG
TCGATCCGGATGCGGATCCGCTGCAGCAGGCCTCCTGGCACATTTGGCCG
TTGGCCGAACCAGGTCCCGAACTCGCAGAGCCACCTTCACTGTAGTTTGC
GTAGCTGCCCCGATTCAGGAGCGGATCGTAAAAGTTGTTGCCACCGCCGG
ACGATGCCGCCGCCTGACTGCTGGTGCTGGCCGCATCCCTGTCCTCTCCG
CTGGCCCGCTCCTCGCTGCACTGCGCGCACTGATCGTCCTGGCACTGGCC
GCCCTGATCCTCGTCCGCTCCTGCGCCACCCGCGTATCGATCCTCCAGAC
GGCGGGACGGTGAGGCCGCCATCTCTGTCTCCAGCAGGAACTCGTTGATG
CTAAGCTGCTCCTCGTTGTCGCTTCGCAGCTCCAGTTCCGTGACGCCCTC
GAAGATCTGCTCGCCGTCGTTGTTGTTGTTCGCGTTCTGGATGTGGTTGC
CGTTGTGGCTGGTGGCTCCGTTGTTGTTCAAGTTCTGCCTGCAGTCCGGG
TCGTTGCAGTACTCCCCGGCGCCTCCATTCCCGGCCAGCTGCTCAAGGCG
GCACTCAGCTGGGCGGCACTGTGCCGTGAGCTGTTCGCCG
BS15607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3257-PA | 1344 | CG3257-RA | 490..1332 | 894..52 | 4215 | 100 | Minus |
CG3257-PA | 1344 | CG3257-RA | 443..489 | 940..894 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 04:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3257-RA | 2911 | CG3257-RA | 749..1638 | 940..52 | 4425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 04:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24120968..24121476 | 940..433 | 2495 | 99.8 | Minus |
2R | 25286936 | 2R | 24121531..24121834 | 436..133 | 1520 | 100 | Minus |
2R | 25286936 | 2R | 24121910..24121990 | 132..52 | 405 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 04:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2443 | 844..755 | 132 | 66.7 | Minus |
BS15607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:35 Download gff for
BS15607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-PA | 443..1336 | 48..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:50 Download gff for
BS15607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-PA | 443..1336 | 48..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:53:29 Download gff for
BS15607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-RA | 749..1642 | 48..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:25:43 Download gff for
BS15607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-RA | 749..1642 | 48..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:25:43 Download gff for
BS15607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24120968..24121474 | 435..940 | 99 | -> | Minus |
2R | 24121533..24121834 | 133..434 | 100 | -> | Minus |
2R | 24121910..24121994 | 48..132 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:53:29 Download gff for
BS15607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20008491..20008997 | 435..940 | 99 | -> | Minus |
arm_2R | 20009056..20009357 | 133..434 | 100 | -> | Minus |
arm_2R | 20009433..20009517 | 48..132 | 97 | | Minus |
BS15607.5prime Sequence
867 bp (785 high quality bases) assembled on 2006-12-21
> BS15607.5prime
GAAGTTATCCCTTTACATGGCGCCCTTCAAGATCAAGTTCCGGATGGGCA
GCTCGCGCAGCACCTCGCAGGAGCACGACCCCGACCCGCAGGTGAACGAG
GCGCTCCTGGGCGCCCAGAGCCAGCAGCAGAACGGGCAGCCCCTCCAGGA
GGCGGTGGAGGCCAGCAGCAGCTCCAGCCTCGACCTCGCGGACTCCAGCA
GTCTCGGCCAGCTGAGCAGCGAGCGCAAGCTGCTCCTGCCGCCCACCACC
AGTAGCAGCACCATGCGATTGGGATATCTTAACCAGAACCGCACTCCGTG
CATCAACGAATCGTTGGCGGATACGGATGCAGACACAGTGCCCACCACCC
CACCGCCTTCCTACGAGCATGTTCTAGAGGAGAACACTCGGTTGTCCCAA
CACCAGCGACAGTTGTCCCTGGACAGCGCCACTCCGAACCAGAACAGCCG
GCGCAGCTCGGCGAACAGCTCACGGCACAGTGCCGCCCAGCTGAGTGCCG
CCTTGGAGCAGCTGGCCGGGAATGGAGGCGCCGGGGAGTACTGCAACGAC
CCGGACTGCAGGCAGAACTTGAACAACAACGGAGCCACCAGCCACAACGG
CAACCACATCCAGAACGCGAACAACAACAACGACGGCGAGCAGATCTTCG
AGGGCGTCACGGAACTGGAGCTGCGAAGCGACAACGAGGAGCAGCTTAGC
ATCAACGAGTTCCTGCTGGAGACAGAGATGGCGGCCTCACCGTCCCGCCG
TCTGGAGGATCGATACGCGGGTGGCGCAGGAGCGGACGAGGATCAGGGCG
GCCAGTGCCAGGACGATCAGTGCGCGCAGTGCAGCGAGGAGCGGGCCAGC
GGAGAGGACAGGGATGC
BS15607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3257-PA | 1344 | CG3257-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG3257-PB | 336 | CG3257-RB | 1..257 | 17..273 | 1285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3257-RA | 2911 | CG3257-RA | 306..1157 | 16..867 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24120890..24121376 | 381..867 | 2435 | 100 | Plus |
2R | 25286936 | 2R | 24119998..24120255 | 16..273 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 24120711..24120821 | 272..382 | 555 | 100 | Plus |
Blast to na_te.dros performed 2015-02-05 23:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2443 | 556..645 | 132 | 66.7 | Plus |
BS15607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:36 Download gff for
BS15607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:52 Download gff for
BS15607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:33:50 Download gff for
BS15607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-RA | 306..1157 | 16..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:34:21 Download gff for
BS15607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3257-RA | 306..1157 | 16..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:34:21 Download gff for
BS15607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24119998..24120254 | 16..272 | 100 | -> | Plus |
2R | 24120712..24120821 | 273..382 | 100 | -> | Plus |
2R | 24120892..24121376 | 383..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:33:50 Download gff for
BS15607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20007521..20007777 | 16..272 | 100 | -> | Plus |
arm_2R | 20008235..20008344 | 273..382 | 100 | -> | Plus |
arm_2R | 20008415..20008899 | 383..867 | 100 | | Plus |
BS15607.pep Sequence
Translation from 16 to 1359
> BS15607.pep
MAPFKIKFRMGSSRSTSQEHDPDPQVNEALLGAQSQQQNGQPLQEAVEAS
SSSSLDLADSSSLGQLSSERKLLLPPTTSSSTMRLGYLNQNRTPCINESL
ADTDADTVPTTPPPSYEHVLEENTRLSQHQRQLSLDSATPNQNSRRSSAN
SSRHSAAQLSAALEQLAGNGGAGEYCNDPDCRQNLNNNGATSHNGNHIQN
ANNNNDGEQIFEGVTELELRSDNEEQLSINEFLLETEMAASPSRRLEDRY
AGGAGADEDQGGQCQDDQCAQCSEERASGEDRDAASTSSQAAASSGGGNN
FYDPLLNRGSYANYSEGGSASSGPGSANGQMCQEACCSGSASGSTASRSG
RSGRRQNQQGQPPNCHTSLLTPEMMSNKTSKEIYKDLAKQWGITCKMSES
CRCMECQSHYFDCDYDDNEHQKTDGGLGAGTPMFISEVMHGSGCNIL*
BS15607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3257-PA | 447 | CG3257-PA | 1..447 | 1..447 | 2352 | 100 | Plus |
CG13594-PB | 478 | CG13594-PB | 98..374 | 143..422 | 194 | 25.4 | Plus |
CG13594-PA | 478 | CG13594-PA | 98..374 | 143..422 | 194 | 25.4 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 311..636 | 12..364 | 169 | 21.8 | Plus |
Mur89F-PB | 2159 | CG4090-PB | 311..636 | 12..364 | 169 | 21.8 | Plus |