Clone BS15607 Report

Search the DGRC for BS15607

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:156
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG3257-RA
Protein status:BS15607.pep: full length peptide match
Sequenced Size:1376

Clone Sequence Records

BS15607.complete Sequence

1376 bp assembled on 2009-12-07

GenBank Submission: KX800482

> BS15607.complete
GAAGTTATCAGTCGACATGGCGCCCTTCAAGATCAAGTTCCGGATGGGCA
GCTCGCGCAGCACCTCGCAGGAGCACGACCCCGACCCGCAGGTGAACGAG
GCGCTCCTGGGCGCCCAGAGCCAGCAGCAGAACGGGCAGCCCCTCCAGGA
GGCGGTGGAGGCCAGCAGCAGCTCCAGCCTCGACCTCGCGGACTCCAGCA
GTCTCGGCCAGCTGAGCAGCGAGCGCAAGCTGCTCCTGCCGCCCACCACC
AGTAGCAGCACCATGCGATTGGGATATCTTAACCAGAACCGCACTCCGTG
CATCAACGAATCGTTGGCGGATACGGATGCAGACACAGTGCCCACCACCC
CACCGCCTTCCTACGAGCATGTTCTAGAGGAGAACACTCGGTTGTCCCAA
CACCAGCGACAGTTGTCCCTGGACAGCGCCACTCCGAACCAGAACAGCCG
GCGCAGCTCGGCGAACAGCTCACGGCACAGTGCCGCCCAGCTGAGTGCCG
CCTTGGAGCAGCTGGCCGGGAATGGAGGCGCCGGGGAGTACTGCAACGAC
CCGGACTGCAGGCAGAACTTGAACAACAACGGAGCCACCAGCCACAACGG
CAACCACATCCAGAACGCGAACAACAACAACGACGGCGAGCAGATCTTCG
AGGGCGTCACGGAACTGGAGCTGCGAAGCGACAACGAGGAGCAGCTTAGC
ATCAACGAGTTCCTGCTGGAGACAGAGATGGCGGCCTCACCGTCCCGCCG
TCTGGAGGATCGATACGCGGGTGGCGCAGGAGCGGACGAGGATCAGGGCG
GCCAGTGCCAGGACGATCAGTGCGCGCAGTGCAGCGAGGAGCGGGCCAGC
GGAGAGGACAGGGATGCGGCCAGCACCAGCAGTCAGGCGGCGGCATCGTC
CGGCGGTGGCAACAACTTTTACGATCCGCTCCTGAATCGGGGCAGCTACG
CAAACTACAGTGAAGGTGGCTCTGCGAGTTCGGGACCTGGTTCGGCCAAC
GGCCAAATGTGCCAGGAGGCCTGCTGCAGCGGATCCGCATCCGGATCGAC
TGCATCCAGGAGCGGGCGGAGTGGAAGGCGGCAGAACCAGCAGGGTCAGC
CGCCCAACTGCCACACCAGCCTGCTCACGCCGGAGATGATGAGCAACAAG
ACGAGCAAGGAGATCTACAAGGACCTGGCCAAGCAGTGGGGCATCACCTG
CAAGATGTCCGAGAGCTGTCGGTGCATGGAGTGTCAGAGTCACTACTTCG
ACTGCGACTACGATGATAACGAGCACCAGAAGACGGACGGAGGATTGGGC
GCTGGCACGCCCATGTTTATCAGCGAGGTGATGCACGGATCCGGGTGCAA
CATTTTGTAGAAGCTTTCTAGACCAT

BS15607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-RA 1344 CG3257-PA 1..1344 17..1360 6720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-RA 2911 CG3257-RA 306..1650 16..1360 6725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24120890..24121476 381..967 2935 100 Plus
2R 25286936 2R 24121531..24121834 964..1267 1520 100 Plus
2R 25286936 2R 24119998..24120255 16..273 1290 100 Plus
2R 25286936 2R 24120711..24120821 272..382 555 100 Plus
2R 25286936 2R 24121910..24122002 1268..1360 465 100 Plus
Blast to na_te.dros performed 2014-11-28 02:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2443 556..645 132 66.7 Plus

BS15607.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:18 Download gff for BS15607.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 310..1653 17..1360 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:47 Download gff for BS15607.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 307..1650 17..1360 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:15:14 Download gff for BS15607.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 310..1653 17..1360 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:58 Download gff for BS15607.complete
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 307..1650 17..1360 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:58 Download gff for BS15607.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24119999..24120254 17..272 100 -> Plus
2R 24120712..24120821 273..382 100 -> Plus
2R 24120892..24121474 383..965 100 -> Plus
2R 24121533..24121834 966..1267 100 -> Plus
2R 24121910..24122002 1268..1360 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:47 Download gff for BS15607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20007522..20007777 17..272 100 -> Plus
arm_2R 20008235..20008344 273..382 100 -> Plus
arm_2R 20008415..20008997 383..965 100 -> Plus
arm_2R 20009056..20009357 966..1267 100 -> Plus
arm_2R 20009433..20009525 1268..1360 100   Plus

BS15607.3prime Sequence

940 bp (750 high quality bases) assembled on 2006-12-21

> BS15607.3prime
TCCCTTAAAGGGCGCGCCAAACGAATGGTCTAGAAAGCTTCTACCTTTGA
GGCACCCGGATCCGTGCATCACCTCGCTGATAAACATGGGCGTGCCAGCG
CCCAATCCTCCGTCCGTCTTCTGGTGCTCGTTATCATCGTAGTCGCAGTC
GAAGTAGTGACTCTGACACTCCATGCACCGACAGCTCTCGGACATCTTGC
AGGTGATGCCCCACTGCTTGGCCAGGTCCTTGTAGATCTCCTTGCTCGTC
TTGTTGCTCATCATCTCCGGCGTGAGCAGGCTGGTGTGGCAGTTGGGCGG
CTGACCCTGCTGGTTCTGCCGCCTTCCACTCCGCCCGCTCCTGGATGCAG
TCGATCCGGATGCGGATCCGCTGCAGCAGGCCTCCTGGCACATTTGGCCG
TTGGCCGAACCAGGTCCCGAACTCGCAGAGCCACCTTCACTGTAGTTTGC
GTAGCTGCCCCGATTCAGGAGCGGATCGTAAAAGTTGTTGCCACCGCCGG
ACGATGCCGCCGCCTGACTGCTGGTGCTGGCCGCATCCCTGTCCTCTCCG
CTGGCCCGCTCCTCGCTGCACTGCGCGCACTGATCGTCCTGGCACTGGCC
GCCCTGATCCTCGTCCGCTCCTGCGCCACCCGCGTATCGATCCTCCAGAC
GGCGGGACGGTGAGGCCGCCATCTCTGTCTCCAGCAGGAACTCGTTGATG
CTAAGCTGCTCCTCGTTGTCGCTTCGCAGCTCCAGTTCCGTGACGCCCTC
GAAGATCTGCTCGCCGTCGTTGTTGTTGTTCGCGTTCTGGATGTGGTTGC
CGTTGTGGCTGGTGGCTCCGTTGTTGTTCAAGTTCTGCCTGCAGTCCGGG
TCGTTGCAGTACTCCCCGGCGCCTCCATTCCCGGCCAGCTGCTCAAGGCG
GCACTCAGCTGGGCGGCACTGTGCCGTGAGCTGTTCGCCG

BS15607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-PA 1344 CG3257-RA 490..1332 894..52 4215 100 Minus
CG3257-PA 1344 CG3257-RA 443..489 940..894 235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 04:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-RA 2911 CG3257-RA 749..1638 940..52 4425 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 04:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24120968..24121476 940..433 2495 99.8 Minus
2R 25286936 2R 24121531..24121834 436..133 1520 100 Minus
2R 25286936 2R 24121910..24121990 132..52 405 100 Minus
Blast to na_te.dros performed 2015-01-31 04:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2443 844..755 132 66.7 Minus

BS15607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:35 Download gff for BS15607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3257-PA 443..1336 48..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:50 Download gff for BS15607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3257-PA 443..1336 48..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:53:29 Download gff for BS15607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 749..1642 48..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:25:43 Download gff for BS15607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 749..1642 48..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:25:43 Download gff for BS15607.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24120968..24121474 435..940 99 -> Minus
2R 24121533..24121834 133..434 100 -> Minus
2R 24121910..24121994 48..132 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:53:29 Download gff for BS15607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20008491..20008997 435..940 99 -> Minus
arm_2R 20009056..20009357 133..434 100 -> Minus
arm_2R 20009433..20009517 48..132 97   Minus

BS15607.5prime Sequence

867 bp (785 high quality bases) assembled on 2006-12-21

> BS15607.5prime
GAAGTTATCCCTTTACATGGCGCCCTTCAAGATCAAGTTCCGGATGGGCA
GCTCGCGCAGCACCTCGCAGGAGCACGACCCCGACCCGCAGGTGAACGAG
GCGCTCCTGGGCGCCCAGAGCCAGCAGCAGAACGGGCAGCCCCTCCAGGA
GGCGGTGGAGGCCAGCAGCAGCTCCAGCCTCGACCTCGCGGACTCCAGCA
GTCTCGGCCAGCTGAGCAGCGAGCGCAAGCTGCTCCTGCCGCCCACCACC
AGTAGCAGCACCATGCGATTGGGATATCTTAACCAGAACCGCACTCCGTG
CATCAACGAATCGTTGGCGGATACGGATGCAGACACAGTGCCCACCACCC
CACCGCCTTCCTACGAGCATGTTCTAGAGGAGAACACTCGGTTGTCCCAA
CACCAGCGACAGTTGTCCCTGGACAGCGCCACTCCGAACCAGAACAGCCG
GCGCAGCTCGGCGAACAGCTCACGGCACAGTGCCGCCCAGCTGAGTGCCG
CCTTGGAGCAGCTGGCCGGGAATGGAGGCGCCGGGGAGTACTGCAACGAC
CCGGACTGCAGGCAGAACTTGAACAACAACGGAGCCACCAGCCACAACGG
CAACCACATCCAGAACGCGAACAACAACAACGACGGCGAGCAGATCTTCG
AGGGCGTCACGGAACTGGAGCTGCGAAGCGACAACGAGGAGCAGCTTAGC
ATCAACGAGTTCCTGCTGGAGACAGAGATGGCGGCCTCACCGTCCCGCCG
TCTGGAGGATCGATACGCGGGTGGCGCAGGAGCGGACGAGGATCAGGGCG
GCCAGTGCCAGGACGATCAGTGCGCGCAGTGCAGCGAGGAGCGGGCCAGC
GGAGAGGACAGGGATGC

BS15607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-PA 1344 CG3257-RA 1..851 17..867 4255 100 Plus
CG3257-PB 336 CG3257-RB 1..257 17..273 1285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 23:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-RA 2911 CG3257-RA 306..1157 16..867 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 23:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24120890..24121376 381..867 2435 100 Plus
2R 25286936 2R 24119998..24120255 16..273 1290 100 Plus
2R 25286936 2R 24120711..24120821 272..382 555 100 Plus
Blast to na_te.dros performed 2015-02-05 23:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2443 556..645 132 66.7 Plus

BS15607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:31:36 Download gff for BS15607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3257-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:09:52 Download gff for BS15607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3257-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 03:33:50 Download gff for BS15607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 306..1157 16..867 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 00:34:21 Download gff for BS15607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3257-RA 306..1157 16..867 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 00:34:21 Download gff for BS15607.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24119998..24120254 16..272 100 -> Plus
2R 24120712..24120821 273..382 100 -> Plus
2R 24120892..24121376 383..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 03:33:50 Download gff for BS15607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20007521..20007777 16..272 100 -> Plus
arm_2R 20008235..20008344 273..382 100 -> Plus
arm_2R 20008415..20008899 383..867 100   Plus

BS15607.pep Sequence

Translation from 16 to 1359

> BS15607.pep
MAPFKIKFRMGSSRSTSQEHDPDPQVNEALLGAQSQQQNGQPLQEAVEAS
SSSSLDLADSSSLGQLSSERKLLLPPTTSSSTMRLGYLNQNRTPCINESL
ADTDADTVPTTPPPSYEHVLEENTRLSQHQRQLSLDSATPNQNSRRSSAN
SSRHSAAQLSAALEQLAGNGGAGEYCNDPDCRQNLNNNGATSHNGNHIQN
ANNNNDGEQIFEGVTELELRSDNEEQLSINEFLLETEMAASPSRRLEDRY
AGGAGADEDQGGQCQDDQCAQCSEERASGEDRDAASTSSQAAASSGGGNN
FYDPLLNRGSYANYSEGGSASSGPGSANGQMCQEACCSGSASGSTASRSG
RSGRRQNQQGQPPNCHTSLLTPEMMSNKTSKEIYKDLAKQWGITCKMSES
CRCMECQSHYFDCDYDDNEHQKTDGGLGAGTPMFISEVMHGSGCNIL*

BS15607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3257-PA 447 CG3257-PA 1..447 1..447 2352 100 Plus
CG13594-PB 478 CG13594-PB 98..374 143..422 194 25.4 Plus
CG13594-PA 478 CG13594-PA 98..374 143..422 194 25.4 Plus
Mur89F-PC 2158 CG4090-PC 311..636 12..364 169 21.8 Plus
Mur89F-PB 2159 CG4090-PB 311..636 12..364 169 21.8 Plus